NO05G00430.1, NO05G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00430.1
Unique NameNO05G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr5:162113..162849 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:162113..162849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00430.1 vs.
Match: EWM28343.1 (hypothetical protein Naga_100367g3 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 2.700e-38
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:    6 LQFLLVSMVMAAGIASESPEAGSK-----THANLR-RALLTPPRDVYSMTITNKLSVAVNSTFTFTKGTNIHEMMIEKKLIAPGASFTSGPYEYKEGTATFRYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESDGRGEKLGSLLLKAP 165
            L  L +++++A  + S++ +  S+      H +LR RALL PPRDVY+MT+TN L+V VNSTFTF+KG   + +MIEKK + PG SFTSGP+EYKEG ATF+Y+L+ VK K  PAGA YS Q+AL L++PF GVTG+TPL+E  + PK  D   + +G+L+LK P
Sbjct:   40 LHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGIT-NWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIP 203
The following BLAST results are available for this feature:
BLAST of NO05G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28343.12.700e-3852.73hypothetical protein Naga_100367g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00430NO05G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00430.1NO05G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00430.1.cds1NO05G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00430.1.cds2NO05G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00430.1 ID=NO05G00430.1|Name=NO05G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGATCAGCACGTGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGC
CGGCATTGCCTCAGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACC
TCCGCCGTGCCCTACTCACACCACCCCGGGATGTGTACTCCATGACCATC
ACCAATAAGTTGAGTGTCGCCGTCAACTCGACCTTTACTTTCACCAAAGG
AACGAACATTCATGAGATGATGATAGAGAAGAAGCTAATCGCCCCCGGCG
CATCCTTCACCTCTGGGCCCTACGAATACAAGGAGGGCACCGCCACCTTC
CGGTACGTCCTCCAAATGGTCAAAGTCAAAAACTTGCCGGCTGGCGCAGG
CTATTCGGAGCAGCAGGCTCTCTCGTTGGAGGCTCCGTTTGAAGGCGTGA
CGGGTGTGACCCCGCTTATGGAATTACACGTGTTGCCTAAGGAGAGTGAT
GGGAGGGGGGAGAAATTGGGAAGCTTGCTGTTGAAGGCGCCGGTGGTGCC
TGCTGTTTAG
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protein sequence of NO05G00430.1

>NO05G00430.1-protein ID=NO05G00430.1-protein|Name=NO05G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MISTCLQFLLVSMVMAAGIASESPEAGSKTHANLRRALLTPPRDVYSMTI
TNKLSVAVNSTFTFTKGTNIHEMMIEKKLIAPGASFTSGPYEYKEGTATF
RYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESD
GRGEKLGSLLLKAPVVPAV*
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mRNA from alignment at chr5:162113..162849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00430.1 ID=NO05G00430.1|Name=NO05G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=737bp|location=Sequence derived from alignment at chr5:162113..162849- (Nannochloropsis oceanica)
ATGATCAGCACGTGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGC
CGGCATTGCCTCAGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACC
TCCGGTACGTAAGCGCAGAGGCCCTCGCTCCCAGCCGCGAGACATGCTTG
CCCTATTATCTCACACACACCACTACGGTCTTGTCTCAAGCGCTTTGTGT
GTGCATCCTCTCGCTTCCCGCTCTCCCCCTTTATGGTCTCGACCTACCAC
CCCCTTCGTAATCCCCGGGGGCACCCTCCGCCGAGCCAACTAACGCATTC
AGGAATCCACCTGATCTTACGCACACTACAGCCGTGCCCTACTCACACCA
CCCCGGGATGTGTACTCCATGACCATCACCAATAAGTTGAGTGTCGCCGT
CAACTCGACCTTTACTTTCACCAAAGGAACGAACATTCATGAGATGATGA
TAGAGAAGAAGCTAATCGCCCCCGGCGCATCCTTCACCTCTGGGCCCTAC
GAATACAAGGAGGGCACCGCCACCTTCCGGTACGTCCTCCAAATGGTCAA
AGTCAAAAACTTGCCGGCTGGCGCAGGCTATTCGGAGCAGCAGGCTCTCT
CGTTGGAGGCTCCGTTTGAAGGCGTGACGGGTGTGACCCCGCTTATGGAA
TTACACGTGTTGCCTAAGGAGAGTGATGGGAGGGGGGAGAAATTGGGAAG
CTTGCTGTTGAAGGCGCCGGTGGTGCCTGCTGTTTAG
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Coding sequence (CDS) from alignment at chr5:162113..162849-

>NO05G00430.1 ID=NO05G00430.1|Name=NO05G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr5:162113..162849- (Nannochloropsis oceanica)
ATGATCAGCACGTGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGC
CGGCATTGCCTCAGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACC
TCCGCCGTGCCCTACTCACACCACCCCGGGATGTGTACTCCATGACCATC
ACCAATAAGTTGAGTGTCGCCGTCAACTCGACCTTTACTTTCACCAAAGG
AACGAACATTCATGAGATGATGATAGAGAAGAAGCTAATCGCCCCCGGCG
CATCCTTCACCTCTGGGCCCTACGAATACAAGGAGGGCACCGCCACCTTC
CGGTACGTCCTCCAAATGGTCAAAGTCAAAAACTTGCCGGCTGGCGCAGG
CTATTCGGAGCAGCAGGCTCTCTCGTTGGAGGCTCCGTTTGAAGGCGTGA
CGGGTGTGACCCCGCTTATGGAATTACACGTGTTGCCTAAGGAGAGTGAT
GGGAGGGGGGAGAAATTGGGAAGCTTGCTGTTGAAGGCGCCGGTGGTGCC
TGCTGTTTAG
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Synonyms
Publications