NO05G00220, NO05G00220 (gene) Nannochloropsis oceanica

Overview
NameNO05G00220
Unique NameNO05G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1603
Alignment locationchr5:97770..99372 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:97770..99372 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G00220 vs. NCBI_GenBank
Match: XP_005853703.1 (hypothetical protein NGA_0444200 [Nannochloropsis gaditana CCMP526] >EKU22658.1 hypothetical protein NGA_0444200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.1 bits (362), Expect = 5.000e-31
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 0 
Query:   95 MDSFSSINAPHVGVLRGLIRLLQEQSIADIAYSFRDQTVYLATLYTLLVLTIIYFLLRYANRSLFRWHTWINIFVSYFCAIGILVLVPIDLAVTQLRRQATTPEAYE 202
            +D  ++ N P   +   L RLLQE SI ++AYSF++QT YLATLYT+LVL I+ FLLRYANRSLFRWHTW+NIFVSY+CAIGILVL+P+DLAVT+L+R+A T E+Y+
Sbjct:   25 VDIAATANQPEPDLFNALSRLLQETSIIEVAYSFQEQTAYLATLYTMLVLGIVLFLLRYANRSLFRWHTWVNIFVSYYCAIGILVLIPLDLAVTKLQREARTVESYD 131
The following BLAST results are available for this feature:
BLAST of NO05G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853703.15.000e-3165.42hypothetical protein NGA_0444200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00220.1NO05G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00220.1NO05G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00220 ID=NO05G00220|Name=NO05G00220|organism=Nannochloropsis oceanica|type=gene|length=1603bp
ATGCCGCCGGCCCCCGTCATCCCGGGTGCGTCGCAGCGTACTGCCTGGTT
CCAAAAACTGTgtaggtgcactgggaagggagtgtcgtactatggtggtg
gaggttcctgctatggtggtatggtaaaagggatgcaagcaaagcaagat
gacgctcctttgccaaaatttaacgctcctatgcctcttgcctctagACC
ACAACACATTGCAAATCGCAGGTACGCCTTCCGTGGCAGAGAGAATATAT
GCATTTAACGACTTTTCCTTACACGGGACGAATGGGTGCGATGGAGGTGT
GGTGTTGCGTGTAAAgtaagtgcaaagacaaggcaaacaaatgagcacga
caagcatcactcgcacacttcttgatccaagccgcgtttcatcctcccga
ttggctttgcactgcgtttgcttgtccaagcttttgtatgaagtcctgta
agaatgaaattcattctccgttcacttaatacctatcacatgaccgattt
ctccaagttttgagacagtgtccagtgtatttcatctcccataaatttat
gggctgccggcccatgccgtaaaatgctgccgtctcacccctacttcccc
tcccatcctttcctgtcctctccacgtgcacagGCGCAGCTACTCCACGC
AACCACGGGAAGCCATAACTATCACCGCAGGCCACAAGgtgcgttcagca
gccgcagatttccttgtcccttgcctgtcatcctaccctcattcctgtct
cggcaaccgccgcttctagggccccccctgacttgcttgcctttgtccct
cccctttgcatctgcttctcaagctttccgtcgtggttgctagataaagg
ccacacccttctaaaaccatgcaaacaatttgaactcctccatcttcttc
ctcatttgttcgttcgtcttattcagctggtaatgcaatatctcaaaact
ccattctctcatttctatctttccccttccatcacgcatacggacactgc
taccgccatagtggactctgaaagcgacatcctctctcgcagAGAGAAGG
GGGCATGGCCAGAGCCGCCGCCGAGAGCGGCAGTAGCACTATGGATTCAT
TCTCTTCCATTAATGCGCCACATGTGGGGGTGCTAAGAGGCCTTATCCGC
TTGCTTCAGGAGCAGAGCATCGCGGACATTGCATATAGCTTTAGGGATCA
Ggtgcgtttagtgttttgtttttctttataagcgatacagaggcggtcac
cgccacgctatttcttttatcactatcacttgcgagcacacccttccttt
ctctcccccctgttccccctcctttccccctaccaataccacaatccctc
accccacccctctcttatctccaactaatagACGGTCTATCTGGCCACAC
TCTACACTCTCCTCGTTTTGACTATCATTTACTTCCTCCTGCGTTACGCC
AACCGGAGCCTCTTCCGTTGGCACACCTGGATAAATATCTTTGTCTCCTA
TTTCTGTGCGATTGGGATTCTCGTTCTCGTTCCTATAGACTTGGCTGTTA
CCCAGCTAAGGCGGCAAGCAACCACGCCCGAGGCGTACGAGCAGGTACAA
TGA
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protein sequence of NO05G00220.1

>NO05G00220.1-protein ID=NO05G00220.1-protein|Name=NO05G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPPAPVIPGASQRTAWFQKLYHNTLQIAGTPSVAERIYAFNDFSLHGTNG
CDGGVVLRVKRSYSTQPREAITITAGHKREGGMARAAAESGSSTMDSFSS
INAPHVGVLRGLIRLLQEQSIADIAYSFRDQTVYLATLYTLLVLTIIYFL
LRYANRSLFRWHTWINIFVSYFCAIGILVLVPIDLAVTQLRRQATTPEAY
EQVQ*
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Synonyms
Publications