NO05G00220.1, NO05G00220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00220.1
Unique NameNO05G00220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length615
Alignment locationchr5:97770..99372 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:97770..99372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00220.1 vs.
Match: XP_005853703.1 (hypothetical protein NGA_0444200 [Nannochloropsis gaditana CCMP526]; EKU22658.1 hypothetical protein NGA_0444200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.1 bits (362), Expect = 5.000e-31
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   95 MDSFSSINAPHVGVLRGLIRLLQEQSIADIAYSFRDQTVYLATLYTLLVLTIIYFLLRYANRSLFRWHTWINIFVSYFCAIGILVLVPIDLAVTQLRRQATTPEAYE 202
            +D  ++ N P   +   L RLLQE SI ++AYSF++QT YLATLYT+LVL I+ FLLRYANRSLFRWHTW+NIFVSY+CAIGILVL+P+DLAVT+L+R+A T E+Y+
Sbjct:   25 VDIAATANQPEPDLFNALSRLLQETSIIEVAYSFQEQTAYLATLYTMLVLGIVLFLLRYANRSLFRWHTWVNIFVSYYCAIGILVLIPLDLAVTKLQREARTVESYD 131          
The following BLAST results are available for this feature:
BLAST of NO05G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400450500550600SequenceXP_005853703.1
Match NameE-valueIdentityDescription
XP_005853703.15.000e-3165.42hypothetical protein NGA_0444200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00220NO05G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00220.1NO05G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00220.1.cds1NO05G00220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00220.1.cds2NO05G00220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00220.1.cds3NO05G00220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00220.1.cds4NO05G00220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00220.1.cds5NO05G00220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00220.1 ID=NO05G00220.1|Name=NO05G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGCCGCCGGCCCCCGTCATCCCGGGTGCGTCGCAGCGTACTGCCTGGTT
CCAAAAACTGTACCACAACACATTGCAAATCGCAGGTACGCCTTCCGTGG
CAGAGAGAATATATGCATTTAACGACTTTTCCTTACACGGGACGAATGGG
TGCGATGGAGGTGTGGTGTTGCGTGTAAAGCGCAGCTACTCCACGCAACC
ACGGGAAGCCATAACTATCACCGCAGGCCACAAGAGAGAAGGGGGCATGG
CCAGAGCCGCCGCCGAGAGCGGCAGTAGCACTATGGATTCATTCTCTTCC
ATTAATGCGCCACATGTGGGGGTGCTAAGAGGCCTTATCCGCTTGCTTCA
GGAGCAGAGCATCGCGGACATTGCATATAGCTTTAGGGATCAGACGGTCT
ATCTGGCCACACTCTACACTCTCCTCGTTTTGACTATCATTTACTTCCTC
CTGCGTTACGCCAACCGGAGCCTCTTCCGTTGGCACACCTGGATAAATAT
CTTTGTCTCCTATTTCTGTGCGATTGGGATTCTCGTTCTCGTTCCTATAG
ACTTGGCTGTTACCCAGCTAAGGCGGCAAGCAACCACGCCCGAGGCGTAC
GAGCAGGTACAATGA
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protein sequence of NO05G00220.1

>NO05G00220.1-protein ID=NO05G00220.1-protein|Name=NO05G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPPAPVIPGASQRTAWFQKLYHNTLQIAGTPSVAERIYAFNDFSLHGTNG
CDGGVVLRVKRSYSTQPREAITITAGHKREGGMARAAAESGSSTMDSFSS
INAPHVGVLRGLIRLLQEQSIADIAYSFRDQTVYLATLYTLLVLTIIYFL
LRYANRSLFRWHTWINIFVSYFCAIGILVLVPIDLAVTQLRRQATTPEAY
EQVQ*
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mRNA from alignment at chr5:97770..99372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00220.1 ID=NO05G00220.1|Name=NO05G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1603bp|location=Sequence derived from alignment at chr5:97770..99372+ (Nannochloropsis oceanica)
ATGCCGCCGGCCCCCGTCATCCCGGGTGCGTCGCAGCGTACTGCCTGGTT CCAAAAACTGTGTAGGTGCACTGGGAAGGGAGTGTCGTACTATGGTGGTG GAGGTTCCTGCTATGGTGGTATGGTAAAAGGGATGCAAGCAAAGCAAGAT GACGCTCCTTTGCCAAAATTTAACGCTCCTATGCCTCTTGCCTCTAGACC ACAACACATTGCAAATCGCAGGTACGCCTTCCGTGGCAGAGAGAATATAT GCATTTAACGACTTTTCCTTACACGGGACGAATGGGTGCGATGGAGGTGT GGTGTTGCGTGTAAAGTAAGTGCAAAGACAAGGCAAACAAATGAGCACGA CAAGCATCACTCGCACACTTCTTGATCCAAGCCGCGTTTCATCCTCCCGA TTGGCTTTGCACTGCGTTTGCTTGTCCAAGCTTTTGTATGAAGTCCTGTA AGAATGAAATTCATTCTCCGTTCACTTAATACCTATCACATGACCGATTT CTCCAAGTTTTGAGACAGTGTCCAGTGTATTTCATCTCCCATAAATTTAT GGGCTGCCGGCCCATGCCGTAAAATGCTGCCGTCTCACCCCTACTTCCCC TCCCATCCTTTCCTGTCCTCTCCACGTGCACAGGCGCAGCTACTCCACGC AACCACGGGAAGCCATAACTATCACCGCAGGCCACAAGGTGCGTTCAGCA GCCGCAGATTTCCTTGTCCCTTGCCTGTCATCCTACCCTCATTCCTGTCT CGGCAACCGCCGCTTCTAGGGCCCCCCCTGACTTGCTTGCCTTTGTCCCT CCCCTTTGCATCTGCTTCTCAAGCTTTCCGTCGTGGTTGCTAGATAAAGG CCACACCCTTCTAAAACCATGCAAACAATTTGAACTCCTCCATCTTCTTC CTCATTTGTTCGTTCGTCTTATTCAGCTGGTAATGCAATATCTCAAAACT CCATTCTCTCATTTCTATCTTTCCCCTTCCATCACGCATACGGACACTGC TACCGCCATAGTGGACTCTGAAAGCGACATCCTCTCTCGCAGAGAGAAGG GGGCATGGCCAGAGCCGCCGCCGAGAGCGGCAGTAGCACTATGGATTCAT TCTCTTCCATTAATGCGCCACATGTGGGGGTGCTAAGAGGCCTTATCCGC TTGCTTCAGGAGCAGAGCATCGCGGACATTGCATATAGCTTTAGGGATCA GGTGCGTTTAGTGTTTTGTTTTTCTTTATAAGCGATACAGAGGCGGTCAC CGCCACGCTATTTCTTTTATCACTATCACTTGCGAGCACACCCTTCCTTT CTCTCCCCCCTGTTCCCCCTCCTTTCCCCCTACCAATACCACAATCCCTC ACCCCACCCCTCTCTTATCTCCAACTAATAGACGGTCTATCTGGCCACAC TCTACACTCTCCTCGTTTTGACTATCATTTACTTCCTCCTGCGTTACGCC AACCGGAGCCTCTTCCGTTGGCACACCTGGATAAATATCTTTGTCTCCTA TTTCTGTGCGATTGGGATTCTCGTTCTCGTTCCTATAGACTTGGCTGTTA CCCAGCTAAGGCGGCAAGCAACCACGCCCGAGGCGTACGAGCAGGTACAA TGA
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Coding sequence (CDS) from alignment at chr5:97770..99372+

>NO05G00220.1 ID=NO05G00220.1|Name=NO05G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr5:97770..99372+ (Nannochloropsis oceanica)
ATGCCGCCGGCCCCCGTCATCCCGGGTGCGTCGCAGCGTACTGCCTGGTT
CCAAAAACTGTACCACAACACATTGCAAATCGCAGGTACGCCTTCCGTGG
CAGAGAGAATATATGCATTTAACGACTTTTCCTTACACGGGACGAATGGG
TGCGATGGAGGTGTGGTGTTGCGTGTAAAGCGCAGCTACTCCACGCAACC
ACGGGAAGCCATAACTATCACCGCAGGCCACAAGAGAGAAGGGGGCATGG
CCAGAGCCGCCGCCGAGAGCGGCAGTAGCACTATGGATTCATTCTCTTCC
ATTAATGCGCCACATGTGGGGGTGCTAAGAGGCCTTATCCGCTTGCTTCA
GGAGCAGAGCATCGCGGACATTGCATATAGCTTTAGGGATCAGACGGTCT
ATCTGGCCACACTCTACACTCTCCTCGTTTTGACTATCATTTACTTCCTC
CTGCGTTACGCCAACCGGAGCCTCTTCCGTTGGCACACCTGGATAAATAT
CTTTGTCTCCTATTTCTGTGCGATTGGGATTCTCGTTCTCGTTCCTATAG
ACTTGGCTGTTACCCAGCTAAGGCGGCAAGCAACCACGCCCGAGGCGTAC
GAGCAGGTACAATGA
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Synonyms
Publications