NO04G05260, NO04G05260 (gene) Nannochloropsis oceanica

Overview
NameNO04G05260
Unique NameNO04G05260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1512
Alignment locationchr4:1484650..1486161 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1484650..1486161 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR007ncniR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05260.3NO04G05260.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G05260.2NO04G05260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G05260.1NO04G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05260.3NO04G05260.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G05260.2NO04G05260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G05260.1NO04G05260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05260 ID=NO04G05260|Name=NO04G05260|organism=Nannochloropsis oceanica|type=gene|length=1512bp
ATGAAGAACACAAGGAGGGACTTCTTCGCTGTTTTGGGGCGGCGTTTTCA
TGAGGAAGGCAAGAAAGTGAAGTTTTGGTTCCACATCCGCAATTTGGTGG
AGCACGAGACATACTCCAGTGGCTTGTTGTGGGCACTCAGTACAAACAGg
tgcattttgctttcgctgtataggaaatcatgcgatcataagattatgcg
atatcaaagtccattcgtctgatgttacgccccccagattggagggactt
ggggaacaaaactctctggtgattctcattgtccctctctccctctgatt
gctcagcacagCCCAGGGAAAGGTCTTGCAGTGGTTTTGGTGGATATCCA
TAGTAGTGGTACTCCTTATGGTCGAGATGTGGCTCGTGGCTTGAGGAAAC
CAGGGTACCATAGTATATTTGAGATACATGCgtaagtttgatatgtacgg
ttgggtgtaaatccagggagttgcttgaatgtcagaatattagagtaata
cacgtgatacacaaaaattaaagggcaccacctcacccaaccgcccaccg
cctatctcacagGGAGCTCACAGACGATGTCATGCTCATGCTGGATCCTT
GCAACCATGCAGGCGTCCCACAAACTAGGCTCCCAAAAgtgcgcatgtga
acggatgaagggtaaaaaaggggtttaaagagaataagggagggaaagtg
aaagtttggaacgtgtccaacctctctcctttcgttggcctctctcttct
cttcttttccttctttcctctcctcccgttcctttgtcccatcccccgtt
cccttctccctcacatcctcaggccacgagcttccacagttttttttcac
ttccaacgacttttcacttccaacccaccggctgtcttcgccccctcttc
ttcctcctctgcccctcccccctgccttccctctattcccacctcagACA
CGCCCCTTAAAAGGAAATGGACTTTCAACCGCGCGGCAGATATAAGGGGA
GGAAGAAAAATGAAGGGAAGAAGAGACACAGGCATCACGTTTTCCTTCTC
AGCTTTTGTCCGAGGCGTCTGACAGCATAGCACTGACTTTCTCTTATTTG
TTTCCCATTTACGGGATCAAAGCATAAGACAGCGCACGATTGCCGGCGAC
AGAATGTTTCCCCAAGGATGCTTCATTGCTGTGGGTAAGAGTTTGCGTAT
TTCATCACAAATTGACGCTACATGTAAATGCTGTTGGAGAAGCGCCACGA
AAAGAAGGAGGAGAACGAGAAAAAGGAGGAGAACGAGGACGATGAAGAGG
AGGAGCAAAAGCTGAGGGACTCGGACTGTTGCGCTTGATCATGCTGGTAT
TTTTAGATGTGTGGTACATGTGCAGATTGGGCGTGAAGTATGAGGAGGGG
ACGGGAGGAGGAGAAGATGGACCAACTCTAAAAAATAGGCCGAAAAAGAA
GAGCCAAGAACACTATAATTGAAAGAATGAATTCAATTGGAAAAACTGAG
CGTAGAAAAAGG
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protein sequence of NO04G05260.3

>NO04G05260.3-protein ID=NO04G05260.3-protein|Name=NO04G05260.3|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKNTRRDFFAVLGRRFHEEGKKVKFWFHIRNLVEHETYSSGLLWALSTNS
PGKGLAVVLVDIHSSGTPYGRDVARGLRKPGYHSIFEIHAELTDDVMLML
DPCNHAGVPQTRLPKVRM*
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protein sequence of NO04G05260.2

>NO04G05260.2-protein ID=NO04G05260.2-protein|Name=NO04G05260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MKNTRRDFFAVLGRRFHEEGKKVKFWFHIRNLVEHETYSSGLLWALSTNS
PGKGLAVVLVDIHSSGTPYGRDVARGLRKPGYHSIFEIHAELTDDVMLML
DPCNHAGVPQTRLPKTRPLKGNGLSTARQI*
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protein sequence of NO04G05260.1

>NO04G05260.1-protein ID=NO04G05260.1-protein|Name=NO04G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKNTRRDFFAVLGRRFHEEGKKVKFWFHIRNLVEHETYSSGLLWALSTNS
PGKGLAVVLVDIHSSGTPYGRDVARGLRKPGYHSIFEIHAELTDDVMLML
DPCNHAGVPQTRLPKVRM*
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Synonyms
Publications