NO04G05260.3, NO04G05260.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05260.3
Unique NameNO04G05260.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr4:1484650..1486161 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1484650..1486161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05260.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05260NO04G05260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05260.3NO04G05260.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05260.3.cds1NO04G05260.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05260.3.cds2NO04G05260.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05260.3.cds3NO04G05260.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05260.3 ID=NO04G05260.3|Name=NO04G05260.3|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
ATGAAGAACACAAGGAGGGACTTCTTCGCTGTTTTGGGGCGGCGTTTTCA
TGAGGAAGGCAAGAAAGTGAAGTTTTGGTTCCACATCCGCAATTTGGTGG
AGCACGAGACATACTCCAGTGGCTTGTTGTGGGCACTCAGTACAAACAGC
CCAGGGAAAGGTCTTGCAGTGGTTTTGGTGGATATCCATAGTAGTGGTAC
TCCTTATGGTCGAGATGTGGCTCGTGGCTTGAGGAAACCAGGGTACCATA
GTATATTTGAGATACATGCGGAGCTCACAGACGATGTCATGCTCATGCTG
GATCCTTGCAACCATGCAGGCGTCCCACAAACTAGGCTCCCAAAAGTGCG
CATGTGAACGGATGAAGGGTAAAAAAGGGGTTTAAAGAGAATAAGGGAGG
GAAAGTGAAAGTTTGGAACGTGTCCAACCTCTCTCCTTTCGTTGGCCTCT
CTCTTCTCTTCTTTTCCTTCTTTCCTCTCCTCCCGTTCCTTTGTCCCATC
CCCCGTTCCCTTCTCCCTCACATCCTCAGGCCACGAGCTTCCACAGTTTT
TTTTCACTTCCAACGACTTTTCACTTCCAACCCACCGGCTGTCTTCGCCC
CCTCTTCTTCCTCCTCTGCCCCTCCCCCCTGCCTTCCCTCTATTCCCACC
TCAGACACGCCCCTTAAAAGGAAATGGACTTTCAACCGCGCGGCAGATAT
AAGGGGAGGAAGAAAAATGAAGGGAAGAAGAGACACAGGCATCACGTTTT
CCTTCTCAGCTTTTGTCCGAGGCGTCTGACAGCATAGCACTGACTTTCTC
TTATTTGTTTCCCATTTACGGGATCAAAGCATAAGACAGCGCACGATTGC
CGGCGACAGAATGTTTCCCCAAGGATGCTTCATTGCTGTGGGTAAGAGTT
TGCGTATTTCATCACAAATTGACGCTACATGTAAATGCTGTTGGAGAAGC
GCCACGAAAAGAAGGAGGAGAACGAGAAAAAGGAGGAGAACGAGGACGAT
GAAGAGGAGGAGCAAAAGCTGAGGGACTCGGACTGTTGCGCTTGATCATG
CTGGTATTTTTAGATGTGTGGTACATGTGCAGATTGGGCGTGAAGTATGA
GGAGGGGACGGGAGGAGGAGAAGATGGACCAACTCTAAAAAATAGGCCGA
AAAAGAAGAGCCAAGAACACTATAATTGAAAGAATGAATTCAATTGGAAA
AACTGAGCGTAGAAAAAGG
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protein sequence of NO04G05260.3

>NO04G05260.3-protein ID=NO04G05260.3-protein|Name=NO04G05260.3|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKNTRRDFFAVLGRRFHEEGKKVKFWFHIRNLVEHETYSSGLLWALSTNS
PGKGLAVVLVDIHSSGTPYGRDVARGLRKPGYHSIFEIHAELTDDVMLML
DPCNHAGVPQTRLPKVRM*
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mRNA from alignment at chr4:1484650..1486161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05260.3 ID=NO04G05260.3|Name=NO04G05260.3|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at chr4:1484650..1486161- (Nannochloropsis oceanica)
ATGAAGAACACAAGGAGGGACTTCTTCGCTGTTTTGGGGCGGCGTTTTCA
TGAGGAAGGCAAGAAAGTGAAGTTTTGGTTCCACATCCGCAATTTGGTGG
AGCACGAGACATACTCCAGTGGCTTGTTGTGGGCACTCAGTACAAACAGG
TGCATTTTGCTTTCGCTGTATAGGAAATCATGCGATCATAAGATTATGCG
ATATCAAAGTCCATTCGTCTGATGTTACGCCCCCCAGATTGGAGGGACTT
GGGGAACAAAACTCTCTGGTGATTCTCATTGTCCCTCTCTCCCTCTGATT
GCTCAGCACAGCCCAGGGAAAGGTCTTGCAGTGGTTTTGGTGGATATCCA
TAGTAGTGGTACTCCTTATGGTCGAGATGTGGCTCGTGGCTTGAGGAAAC
CAGGGTACCATAGTATATTTGAGATACATGCGTAAGTTTGATATGTACGG
TTGGGTGTAAATCCAGGGAGTTGCTTGAATGTCAGAATATTAGAGTAATA
CACGTGATACACAAAAATTAAAGGGCACCACCTCACCCAACCGCCCACCG
CCTATCTCACAGGGAGCTCACAGACGATGTCATGCTCATGCTGGATCCTT
GCAACCATGCAGGCGTCCCACAAACTAGGCTCCCAAAAGTGCGCATGTGA
ACGGATGAAGGGTAAAAAAGGGGTTTAAAGAGAATAAGGGAGGGAAAGTG
AAAGTTTGGAACGTGTCCAACCTCTCTCCTTTCGTTGGCCTCTCTCTTCT
CTTCTTTTCCTTCTTTCCTCTCCTCCCGTTCCTTTGTCCCATCCCCCGTT
CCCTTCTCCCTCACATCCTCAGGCCACGAGCTTCCACAGTTTTTTTTCAC
TTCCAACGACTTTTCACTTCCAACCCACCGGCTGTCTTCGCCCCCTCTTC
TTCCTCCTCTGCCCCTCCCCCCTGCCTTCCCTCTATTCCCACCTCAGACA
CGCCCCTTAAAAGGAAATGGACTTTCAACCGCGCGGCAGATATAAGGGGA
GGAAGAAAAATGAAGGGAAGAAGAGACACAGGCATCACGTTTTCCTTCTC
AGCTTTTGTCCGAGGCGTCTGACAGCATAGCACTGACTTTCTCTTATTTG
TTTCCCATTTACGGGATCAAAGCATAAGACAGCGCACGATTGCCGGCGAC
AGAATGTTTCCCCAAGGATGCTTCATTGCTGTGGGTAAGAGTTTGCGTAT
TTCATCACAAATTGACGCTACATGTAAATGCTGTTGGAGAAGCGCCACGA
AAAGAAGGAGGAGAACGAGAAAAAGGAGGAGAACGAGGACGATGAAGAGG
AGGAGCAAAAGCTGAGGGACTCGGACTGTTGCGCTTGATCATGCTGGTAT
TTTTAGATGTGTGGTACATGTGCAGATTGGGCGTGAAGTATGAGGAGGGG
ACGGGAGGAGGAGAAGATGGACCAACTCTAAAAAATAGGCCGAAAAAGAA
GAGCCAAGAACACTATAATTGAAAGAATGAATTCAATTGGAAAAACTGAG
CGTAGAAAAAGG
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Coding sequence (CDS) from alignment at chr4:1484650..1486161-

>NO04G05260.3 ID=NO04G05260.3|Name=NO04G05260.3|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr4:1484650..1486161- (Nannochloropsis oceanica)
ATGAAGAACACAAGGAGGGACTTCTTCGCTGTTTTGGGGCGGCGTTTTCA
TGAGGAAGGCAAGAAAGTGAAGTTTTGGTTCCACATCCGCAATTTGGTGG
AGCACGAGACATACTCCAGTGGCTTGTTGTGGGCACTCAGTACAAACAGC
CCAGGGAAAGGTCTTGCAGTGGTTTTGGTGGATATCCATAGTAGTGGTAC
TCCTTATGGTCGAGATGTGGCTCGTGGCTTGAGGAAACCAGGGTACCATA
GTATATTTGAGATACATGCGGAGCTCACAGACGATGTCATGCTCATGCTG
GATCCTTGCAACCATGCAGGCGTCCCACAAACTAGGCTCCCAAAAGTGCG
CATGTGA
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Synonyms
Publications