NO04G05170, NO04G05170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G05170 vs. NCBI_GenBank
Match: GBG28388.1 (Mitochondrial thiamine pyrophosphate carrier 1 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 186.4 bits (472), Expect = 2.400e-43 Identity = 115/285 (40.35%), Postives = 163/285 (57.19%), Query Frame = 0 Query: 294 SYYTASGIAAVINFPLWKASAIGQSGFQLATLHPSLPXXXXXXXXXXLAAMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPA----SPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLVEEEGAR-------------FLWRGMGKNVVAVTIPVAATIFLADMIGR 562 +Y AS AA +N+PLWKASA+ QS F + P A+APPY+G+ A GM WAR IF+GS+ + L Q +G A A P L S+ VQ+ NMPI+RA+IT+QNP ++ T L+ + G LW G AG++K+VPKY+T+VVVKD E +L + +++ + R+ +K+V AG+AGAVLTNP D++RNE FK + L T+R L +E AR ++ RG+G N+VAV++P+ TIFL D R Sbjct: 10 AYLAASAGAAAVNYPLWKASAVSQSAF----IQPQ-GDGLAARFQVFKQAIAPPYRGMPAVIFGMTWARCAIFFGSDYWRPRL-QQWGAPDAVAMMTPPLVFSSIVQIVNMPIVRASITMQNPKVENDPNFRTTVSTLRHLAETKGFFKLWHGLPAGLIKSVPKYITSVVVKDLCEMYLPKASTESE-----FLTRSCIKSVVAGVAGAVLTNPADILRNEMFKTDLGLFDTVRKLRTDELARRPNASSPFLASMGWVTRGLGSNLVAVSVPITLTIFLTDFFIR 283
BLAST of NO04G05170 vs. NCBI_GenBank
Match: KOO52867.1 (hypothetical protein Ctob_013366 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 182.6 bits (462), Expect = 3.500e-42 Identity = 102/217 (47.00%), Postives = 138/217 (63.59%), Query Frame = 0 Query: 346 PPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQ---RAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADMI 560 PPYKGV AT GM WARA IFYGS+ GK+ + Q G A A +P + + FVQ+ N PI+R+TI LQ+P+S N L + G K + G+SA ++KTVPKY+ A++VKD + L P+ + R V+ RAA+K+V AG+AGA LTNPLDV+RNE FK E+ T++ L+ EG F RGM +N+VAV +P+A TIFL D + Sbjct: 7 PPYKGVTATIFGMTWARAAIFYGSDVGKDYMVQQ-GHSTALASTVPPMGLAVFVQVANQPIVRSTIMLQDPSSTQPNVLSQLVELTRTRGWKAAYHGSSASVLKTVPKYVCAILVKDWVAANLPP-PSAREGTRQHKVEALNRAAVKSVAAGVAGAALTNPLDVIRNEMFKFEEGFGQTVQRLLRSEGWAFCLRGMQRNLVAVAVPIAMTIFLTDTL 221
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_001750746.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ84451.1 predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 181.4 bits (459), Expect = 7.700e-42 Identity = 97/201 (48.26%), Postives = 131/201 (65.17%), Query Frame = 0 Query: 358 MCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADM 559 M WARA IFYGS+ G++ L++ G A A +P L S VQ+ NMP++R +I LQ+PASP+ + + I + G GLW G SAGI KTVPKY+TAV+VK M+ L P + + R + R+A KAV AG AGA+LTNP DV+RN F+ + + P +R L + EG RF+WRG+ KN++AV IPV TIFL D+ Sbjct: 1 MTWARAAIFYGSDFGRKHLTE-AGAPKAVAVVLPPLALSIGVQIVNMPLVRCSIMLQDPASPHSSVLAIGRDIVHRRGYAGLWHGLSAGIAKTVPKYVTAVLVKQAMDRSL--APVNKEQDRLGWLVRSAKKAVVAGTAGAILTNPFDVIRNHMFRTDLGMVPAIRSLYQTEGPRFVWRGVAKNMIAVAIPVTVTIFLTDI 198
BLAST of NO04G05170 vs. NCBI_GenBank
Match: OLP87927.1 (Calcium-binding mitochondrial carrier protein SCaMC-2 [Symbiodinium microadriaticum]) HSP 1 Score: 165.2 bits (417), Expect = 5.700e-37 Identity = 98/269 (36.43%), Postives = 143/269 (53.16%), Query Frame = 0 Query: 295 YYTASGIAAVINFPLWKASAIGQSGFQLATLHPSLPXXXXXXXXXXLAAMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQ-NPASPYQNTSEA-----LQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLAD 558 Y AS +++ + P+WKA+ IGQSG+ L P L A PPY+G +G WA+A IF+GS++G L + G WA +P L S VQ+ N P +R++I LQ +P + ++S + L+ ++ G++ LWLGT I +T PKY+ AV KD ME+ L + D D + V R +TNPLDV +NE +K S T++ L EG R+L+RG+ KNV+A +P+A TIFL D Sbjct: 11 YLLASAVSSFVTLPVWKAATIGQSGYALTAESP---------LGRFLEAARPPYRGSFVVVSGRTWAQAMIFFGSDEGSRWL-RRCGWSSLWASCVPPLLISANVQVANQPFVRSSIMLQGDPQVRFAHSSHSPNLAVLRYLWRTKGLRALWLGTGVSIARTAPKYVAAVGAKDAMEELLAQ---DDDMTIASSVLRXXXXXXXXXXXXXXVTNPLDVAQNEMYKTGDSFVSTVKRLQRAEGCRWLFRGVDKNVLASAMPMALTIFLTD 266
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_005773142.1 (hypothetical protein EMIHUDRAFT_469931, partial [Emiliania huxleyi CCMP1516] >EOD20713.1 hypothetical protein EMIHUDRAFT_469931, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 149.8 bits (377), Expect = 2.500e-32 Identity = 87/199 (43.72%), Postives = 120/199 (60.30%), Query Frame = 0 Query: 293 VSYYTASGIAAVINFPLWKASAIGQSGF--QLATLHPSLPXXXXXXXXXXLAAMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEE--VPADADNPRSLLVQRAA 488 +SY + +G+AA++NFPLWKA+AIGQSGF Q T L + PPYKGV AT GM WARA IFY ++ G++ + G A A A+PA+ ST VQ+ N PI+R TIT+Q+P+S + AL+ I++ G+ GLW GT + KTVPKY+ A+ VKD M++ L + P A RS ++Q A Sbjct: 10 ISYLSGAGLAALVNFPLWKAAAIGQSGFTAQGPTFFARLK-----------VLLGPPYKGVAATLFGMTWARAAIFYCADAGRDRMLA-LGASPAAATALPAVGISTLVQVVNQPIVRGTITIQDPSSRHAGLVAALRHIHATRGVSGLWHGTVPAVAKTVPKYVVAIWVKDAMQELLPKPTAPPGAPGHRSQVLQARA 196
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_002287920.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95363.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 145.2 bits (365), Expect = 6.100e-31 Identity = 92/225 (40.89%), Postives = 123/225 (54.67%), Query Frame = 0 Query: 295 YYTASGIAAVINFPLWKASAIGQSGFQL---ATLHPSLPXXXXXXXXXXLA----AMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECF 513 Y++AS IAAV+N+PLW+ASA+GQSGF++ + +P + LA A +PPYKG+ AT GM WARA IFYGS++GKE+L G A +P L ST V GI GLW GTSAGI+KTVPKY TA+ VKD E L V ++++ + +A+K+ AG+AGA LTNPLDV+++ F Sbjct: 14 YFSASTIAAVLNYPLWRASAVGQSGFRVVLQSANYPPVLTHVASAVPQSLAPYFHAFSPPYKGLAATVMGMSWARAAIFYGSDRGKEILLS-MGFANTTATVLPPLVVSTAVH---------------------------------HGISGLWHGTSAGILKTVPKYCTAIFVKDYFERVLPPVDPESEHKDREKLVHSAIKSSAAGVAGAALTNPLDVMQSVHF 204
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_012869902.1 (PREDICTED: mitochondrial basic amino acids transporter isoform X1 [Dipodomys ordii]) HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8 Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 0 Query: 348 YKGVLATWAGMCWARATIFYGSEKGKELLSQ----HYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQ--NPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLV-------EEEGARFLWRGMGKNVVAVTIPVAATIF--LADMIGRARG 565 YKG+ + G+ + A +F +L H V GA AGAI V C M + + + LQ PA Y+ + + L IY + G++G+ G ++ +++ P + + D + L PAD LLV + L TAG+A + T P+DVV++ P RGL+ E EG R RG+G ++ PV A F + ++ ARG Sbjct: 81 YKGLGSPLMGLTFINALVFGVQGNTLRVLGHDSPLHQFVAGAAAGAIQC------VICCPMELAKTRLQLQAAGPARAYKGSLDCLAQIYRREGLRGINRGMASTLLRETPSFGVYFLTYDVLTRALRCEPAD-----PLLVPKLLLAGGTAGMASWLSTYPVDVVKSRLQADGVRGAPRYRGLLDCARQSYEAEGWRVFTRGLGSTLLR-AFPVNAATFATVTAVLSYARG 300
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_012869910.1 (PREDICTED: mitochondrial basic amino acids transporter isoform X2 [Dipodomys ordii]) HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8 Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 0 Query: 348 YKGVLATWAGMCWARATIFYGSEKGKELLSQ----HYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQ--NPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLV-------EEEGARFLWRGMGKNVVAVTIPVAATIF--LADMIGRARG 565 YKG+ + G+ + A +F +L H V GA AGAI V C M + + + LQ PA Y+ + + L IY + G++G+ G ++ +++ P + + D + L PAD LLV + L TAG+A + T P+DVV++ P RGL+ E EG R RG+G ++ PV A F + ++ ARG Sbjct: 59 YKGLGSPLMGLTFINALVFGVQGNTLRVLGHDSPLHQFVAGAAAGAIQC------VICCPMELAKTRLQLQAAGPARAYKGSLDCLAQIYRREGLRGINRGMASTLLRETPSFGVYFLTYDVLTRALRCEPAD-----PLLVPKLLLAGGTAGMASWLSTYPVDVVKSRLQADGVRGAPRYRGLLDCARQSYEAEGWRVFTRGLGSTLLR-AFPVNAATFATVTAVLSYARG 278
BLAST of NO04G05170 vs. NCBI_GenBank
Match: XP_012869920.1 (PREDICTED: mitochondrial basic amino acids transporter isoform X3 [Dipodomys ordii] >XP_012869929.1 PREDICTED: mitochondrial basic amino acids transporter isoform X3 [Dipodomys ordii]) HSP 1 Score: 66.6 bits (161), Expect = 2.800e-7 Identity = 59/197 (29.95%), Postives = 90/197 (45.69%), Query Frame = 0 Query: 379 HYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQ--NPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLV-------EEEGARFLWRGMGKNVVAVTIPVAATIF--LADMIGRARG 565 H V GA AGAI V C M + + + LQ PA Y+ + + L IY + G++G+ G ++ +++ P + + D + L PAD LLV + L TAG+A + T P+DVV++ P RGL+ E EG R RG+G ++ PV A F + ++ ARG Sbjct: 28 HQFVAGAAAGAIQC------VICCPMELAKTRLQLQAAGPARAYKGSLDCLAQIYRREGLRGINRGMASTLLRETPSFGVYFLTYDVLTRALRCEPAD-----PLLVPKLLLAGGTAGMASWLSTYPVDVVKSRLQADGVRGAPRYRGLLDCARQSYEAEGWRVFTRGLGSTLLR-AFPVNAATFATVTAVLSYARG 212 The following BLAST results are available for this feature:
BLAST of NO04G05170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 19
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G05170 ID=NO04G05170|Name=NO04G05170|organism=Nannochloropsis oceanica|type=gene|length=3944bpback to top protein sequence of NO04G05170.2 >NO04G05170.2-protein ID=NO04G05170.2-protein|Name=NO04G05170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=476bpback to top protein sequence of NO04G05170.1 >NO04G05170.1-protein ID=NO04G05170.1-protein|Name=NO04G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bpback to top Synonyms
Publications
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