Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1439435..1443378 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05170.1 vs.
Match: XP_005853766.1 (hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526]; EKU22593.1 hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 434.9 bits (1117), Expect = 3.900e-118
Identity = 224/286 (78.32%), Postives = 240/286 (83.92%), Query Frame = 0
Query: 283 GGGGAGKADAVSYYTASGIAAVINFPLWKASAIGQSGFQLA---TLHPSLPPALPSYLTRYLAAMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKTVPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVLTNPLDVVRNECFKREQSLRPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADMIGRARGL 566
G GG GKADAVSYYTASGIAA+INFPLWKASAIGQSGFQLA TLHP+ PPALP YL+RY AAMAPPYKGV ATWAGMCWARATIFYGSE+GKELL Q YGV GAWAGA+PAL TSTFVQLCNMPIIRATIT+QNPASPY+NT+EAL+AIY KGG+ KME+WL+ VP + DN RSLLVQR+A+KAVTAGLAGAVLTNPLDVVRNECFKREQSL PTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLAD+I RARGL
Sbjct: 2 GIGGGGKADAVSYYTASGIAAIINFPLWKASAIGQSGFQLASTTTLHPTFPPALPPYLSRYFAAMAPPYKGVFATWAGMCWARATIFYGSERGKELLRQRYGVTGAWAGALPALVTSTFVQLCNMPIIRATITVQNPASPYRNTTEALRAIYKKGGV--------------------------KMEEWLDPVPENVDNARSLLVQRSAIKAVTAGLAGAVLTNPLDVVRNECFKREQSLGPTLRGLVEEEGARFLWRGMGKNVVAVTIPVAATIFLADIISRARGL 261
The following BLAST results are available for this feature:
BLAST of NO04G05170.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 3.90e-118 / Id = 78.32 Sequence XP_005853766.1
Match Name E-value Identity Description
XP_005853766.1 3.900e-118 78.32 hypothetical protein NGA_0472300 [Nannochloropsis ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G05170.1 ID=NO04G05170.1|Name=NO04G05170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp ATGCCCAATGCCCATTTGAGGACGGATGTTACGTGCCCCATTGCCGTCCC GAGACACGAACTGTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGC ATCGTCTCCCTCCTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCT TCCTCTTCTTCTTCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTT TTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTT CCTCTTATTCTTCTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCT TCTTCTTCTTGTTCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCC TCCTCCCCCTTCTCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCAC CTCCTCCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCT CCTCCTTCTCCTTCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACA ATCGAGACCACAGAGAGTGAGTTGGAAGCACTCCTCCGTCGGTCCCCTCC TCTTGTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACG GGATTAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAA GCTGTGCGGAGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCA ACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAG GGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGC AGTTTGTAGGACCGCATACGAGGATAGCACTTCAGGAATGGGCGGAGGCG GCGGTGGCGCTGGCAAGGCCGACGCTGTTTCCTACTACACAGCTTCCGGG ATTGCCGCCGTCATCAACTTTCCACTATGGAAGGCCAGCGCCATCGGACA ATCTGGCTTCCAGCTTGCGACCCTCCACCCCTCCCTCCCTCCCGCCCTCC CTTCCTACCTCACCCGGTACCTAGCCGCCATGGCCCCGCCTTACAAGGGT GTTTTGGCCACTTGGGCAGGCATGTGCTGGGCTCGTGCCACAATTTTCTA CGGATCGGAGAAGGGGAAGGAGTTGTTGAGCCAGCACTACGGGGTGAAGG GAGCTTGGGCCGGCGCCATCCCTGCCCTCTTCACCTCCACCTTCGTCCAG CTCTGTAATATGCCAATCATTCGAGCCACCATCACGCTCCAGAACCCCGC GTCTCCCTACCAGAATACCTCCGAGGCGCTGCAGGCCATCTATTCAAAGG GAGGGATCAAGGGCCTCTGGCTCGGGACCTCGGCAGGGATTATGAAGACA GTTCCGAAATATATGACGGCCGTGGTGGTCAAGGACAAGATGGAGGACTG GTTGGAGGAGGTTCCGGCTGACGCGGACAATCCTCGCTCTCTCCTCGTCC AGCGTGCGGCCTTGAAAGCCGTTACTGCCGGCTTGGCGGGCGCCGTGCTG ACTAACCCGTTGGACGTGGTGAGGAACGAGTGCTTTAAGCGGGAGCAGAG CCTTAGGCCGACCTTGCGGGGGCTGGTGGAGGAGGAAGGGGCACGCTTCT TGTGGAGGGGGATGGGCAAGAACGTGGTGGCCGTGACGATCCCAGTGGCC GCCACCATCTTCCTCGCAGACATGATCGGAAGGGCCCGGGGCTTGTAGCC CTAGGGAGGGAGGGTGTCACCGGGTTGTGTGTATTTGTAGGGCATTTCCG CTGCTTTGCTCTTGCTGTCGAAAGAGGACGAGGGTGGGAAAAGTAAGGAA GCAAGGGTTAAAAGAAGGCAAGAGGAAGGGAGGGAGGGAGAGATGAAAAA GAGGAATGTAACAGTACCGGATAAAGGGATTGTGAGACCATCACTGATAT GTCGGGCCTTCCATTAAATTGCAACATAGACAGCTGTGGTCGCTTCCTCC TCCATATTGACAGTCG back to top protein sequence of NO04G05170.1
>NO04G05170.1-protein ID=NO04G05170.1-protein|Name=NO04G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp MPNAHLRTDVTCPIAVPRHELFTGVTPIQSSETHRLPPAPPPLPPSSSSS SSSSSSSPSSFSSSPSFSSSSSSSPSPSTSSSSSSYSSSSSSSFTSSSPP SSSCSSSASSSSSPPPPPPPSPPPPPPPPPPPPPPPPPSPPPSPPSPPPS PPSPSAILAIGFRRCPQSRPQRVSWKHSSVGPLLLCYIRPKRSDRSESLT GLVRFEKKEDAAAAVTKLCGERLHDRVLKPELINRPFLFLDDNGRLVESK GRDREKDKERKAALKAAVCRTAYEDSTSGMGGGGGGAGKADAVSYYTASG IAAVINFPLWKASAIGQSGFQLATLHPSLPPALPSYLTRYLAAMAPPYKG VLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQ LCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKGLWLGTSAGIMKT VPKYMTAVVVKDKMEDWLEEVPADADNPRSLLVQRAALKAVTAGLAGAVL TNPLDVVRNECFKREQSLRPTLRGLVEEEGARFLWRGMGKNVVAVTIPVA ATIFLADMIGRARGL* back to top mRNA from alignment at chr4:1439435..1443378-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05170.1 ID=NO04G05170.1|Name=NO04G05170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3944bp|location=Sequence derived from alignment at chr4:1439435..1443378- (Nannochloropsis oceanica)ATGCCCAATGCCCATTTGAGGACG GTTTGTAGTTCTTTGGAGCGTTCCTA
CATCTCTCTAGAACTATCGCATGCAACCTGACGTCTTCGAGGACTTGCAT
ACGAGGGGGAGCCTTCCAACAAGAAATTGTTGTCATCCCTTATTTCCTTG
TCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTTGACCTGGCAAAGTCCC
TGGACGGCCCACACAGGGCCAGGAGGAGAGGGGGAAGGAGGATAAAAGAG
GAGGTCAGCGGGAAGGCTACACATAGAGTGTCCCTATATCCTGCCGCGGT
TGACCAAACCGCAGATCATGGGGACGAGCTTCCCCTCGGACCATACTCCT
GTACACCCGTAGGATGTTACGTGCCCCATTGCCGTCCCGAGACACGAACT
GTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGCATCGTCTCCCTC
CTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCTTCCTCTTCTTCT
TCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTTTTCTTCTTCTTC
TTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTTCCTCTTATTCTT
CTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCTTCTTCTTCTTGT
TCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCCTCCTCCCCCTTC
TCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCACCTCCTCCTCCTC
CTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCT
TCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACAATCGAG GTGTAC
CTTTGTCTGTGGTTTGAGGAGGGGGGGGGGGGGGGGGGAAATAGAGAGGA
AGTGTGACGGCTCTAATGGAGGGTGTGGTGTTGTCCTTGGCATAATGGCA
AAATGTAAGTTGTATTTTCCTCACGTCCCTCTCTTCCTCCCTCCTTCTCT
CCCTCCCCATTTCCTCGTGCCCCTAGACCACAGAGAGTGAGTTGGAAGCA
CTCCTCCGTCGGTCCCCTCCTCTTGTGCTACATTCGGCCTAAGCGCAGCG
ACCGGAGTGAGAGTCTCACGGGATTAGTCAGGTTTGAGAAGAAGGAGGAT
GCCGCGGCGGCCGTTACGAAGCTGTGCGG GTGAGACGGGAGGGAGGAAGG
GAGGGAGGGAGGGAGGAAGGGAAGGAGAAAGGGAAGGAGGAAGGGAGATT
CTCCGCATGGCTGCTTGGTTGTTGATGTTTTTGACTGAATCTGCACACAA
ACTTTTCTTATTCCTCTCCCTCAGAGAACGTCTGCATGACCGTGTCCTCA
AGCCCGAGCTTATCAACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGC
CTGGTGGAGTCCAAGGGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGC
AGCGCTTAAGGCGGCAGTTTGTAG GTAAATGGCCAAGTCTGGTGCACAAG
GGAAGAAGGTCGGCCCATACTGTTTTTCTTTTGGCGCGAAACGGCCACAT
GAACGGAATAGCCGGGCACTCCGAGACTCAATGTTCTTGTCCACCTTTCC
AGTTTAGCGGCCACACTTGCCCCCTCCCTCCGCCGGCATAATTTATCTGA
GGCCTGATGTGGTTGCTTAGTGCGTGTGAGAGTTGTGTGACCTTGGTAGG
GCAAGCGAGACGTTGCTGGATAAAGAACAACCAACACAAACTTTGCGATC
CTGATCTATTGGAAGCACGCCATTCTTTTTTTCCTCCTCATGTCCTCTCC
ACACGGCGTGCATTGACGTACAACACAGGACCGCATACGAGGATAGCACT
TCAGGAATGGGCGGAGGCGGCGGTGGCGCTGGCAAGGCCGACGCTGTTTC
CTACTACACAGCTTCCGGG GTAAGTTAATCCTTCTAGCAAAGTTTCTCTC
CCGCTCTGTTTCTCCCTTCAATGTATGACGACCCCTGACACTGTCCAATC
TCTCTGTTCCTCCATCCTTCCTAGATTGCCGCCGTCATCAACTTTCCACT
ATGGAAGGCCAGCGCCATCGGACAATCTGGCTTCCAGCTTGCGACCCTCC
ACCCCTCCCTCCCTCCCGCCCTCCCTTCCTACCTCACCCGGTACCTAGCC
GCCATGGCCCCGCCTTACAAGGGTGTTTTGGCCACTTGGGCAGGCATGTG
CTGGGCTCGTGCCACAATTTTCTACGGATCGGAGAAGGGGAAGGAGTTGT
TGAGCCAGCACTACGGGGTGAAGGGAGCTTGGGCCGG GTAAGGCAGGCAG
GGAGGGAGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAATGATGGGGG
AAATGGAAGGGCGCGTATAAATAGGCGTCGGCTGTTGATGCATAGGTATC
AGGACTATGATGTGAGCGAATGCACGTATTACAGAATGTTCAGCTGCCCC
AACATCTATCTGACACTTCCCTCCCTTCCTTCCTACCCCACGTTCCTTGC
CTTCATTCCTTCCCTCCCTCCCTCCCTCCCACCCTCCCACAGCGCCATCC
CTGCCCTCTTCACCTCCACCTTCGTCCAGCTCTGTAATATGCCAATCATT
CGAGCCACCATCACGCTCCAGAACCCCGCGTCTCCCTACCAGAATACCTC
CGAGGCGCTGCAGGCCATCTATTCAAAGGGAGGGATCAAG GTGGGTAGGG
AGGGAGGAAGGGAGGGAGGAAACGAGGGAGAAAGAAGGAGTGGTGGACGA
TTGAGAGGTTATGGATTTGTTCTGATGGCATTTGGACTCGGATGTAGCTG
GCCTTAAAACAACATTGATTAGTTTTTATATTTCTGCCTCACACGTGATG
GGAACGGCTCAAAGTCCTCAAGCAATCTCATTGTCGCTCGCTGTTTTCGC
ATTTTTGCCTTCCTTTTTTCCCTCTCTCATTCCCTCCCTCCCTCCCTCAG
GGCCTCTGGCTCGGGACCTCGGCAGGGATTATGAAGACAGTTCCGAAATA
TATGACGGCCGTGGTGGTCAAGGACAAG GTAGGGATGGAGGGAGGGAGGG
AGGAAAAGGGGGAGGAAGGGAAGGAGGGAGAGGGGGAGGGAAAAGCCAGC
CATGGAAAGGAGAAGGATCACAGCACCACATGAAATGTGCGGGCATGGCT
TGTGTAGATTTGAATCGACCAACACACCCTCCCTCCTTGCTTCCCTCGGT
CGCTCCCTCCCCCTTTCCCTCTCTCCTGGCAGATGGAGGACTGGTTGGAG
GAGGTTCCGGCTGACGCGGACAATCCTCGCTCTCTCCTCGTCCAGCGTGC
GGCCTTGAAAGCCGTTACTGCCGGCTTGGCGGGCGCCGTGCTGACTAACC
CGTTGGACGTGGTGAGGAACGAGTGCTTTAAGCGGGAGCAGAGCCTTAGG
CCGACCTTGCGGGGGCTGGTGGAGGAGGAAGGGGCACGCTTCTTGTGGAG
GGGGATGG GTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGTGGGGG
AAGCCAAGGCCAAAACCAAGTGACTAGATTTCAAATGATTCTTATCCACT
CGCTCTTCTTTCCCGCTCCCTCCCTCCCTCCCCCCTTGTCCAGGCAAGAA
CGTGGTGGCCGTGACGATCCCAGTGGCCGCCACCATCTTCCTCGCAGACA
TGATCGGAAGGGCCCGGGGCTTGTAG CCCTAGGGAGGGAGGGTGTCACCG
GGTTGTGTGTATTTGTAGGGCATTTCCGCTGCTTTGCTCTTGCTGTCGAA
AGAGGACGAGGGTGGGAAAAGTAAGGAAGCAAGGGTTAAAAGAAGGCAAG
AGGAAGGGAGGGAGGGAGAGATGAAAAAGAGGAATGTAACAGTACCGGAT
AAAGGGATTGTGAGACCATCACTGATATGTCGGGCCTTCCATTAAATTGC
AACATAGACAGCTGTGGTCGCTTCCTCCTCCATATTGACAGTCG back to top Coding sequence (CDS) from alignment at chr4:1439435..1443378-
>NO04G05170.1 ID=NO04G05170.1|Name=NO04G05170.1|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at chr4:1439435..1443378- (Nannochloropsis oceanica) ATGCCCAATGCCCATTTGAGGACGGATGTTACGTGCCCCATTGCCGTCCC GAGACACGAACTGTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGC ATCGTCTCCCTCCTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCT TCCTCTTCTTCTTCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTT TTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTT CCTCTTATTCTTCTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCT TCTTCTTCTTGTTCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCC TCCTCCCCCTTCTCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCAC CTCCTCCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCT CCTCCTTCTCCTTCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACA ATCGAGACCACAGAGAGTGAGTTGGAAGCACTCCTCCGTCGGTCCCCTCC TCTTGTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACG GGATTAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAA GCTGTGCGGAGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCA ACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAG GGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGC AGTTTGTAGGACCGCATACGAGGATAGCACTTCAGGAATGGGCGGAGGCG GCGGTGGCGCTGGCAAGGCCGACGCTGTTTCCTACTACACAGCTTCCGGG ATTGCCGCCGTCATCAACTTTCCACTATGGAAGGCCAGCGCCATCGGACA ATCTGGCTTCCAGCTTGCGACCCTCCACCCCTCCCTCCCTCCCGCCCTCC CTTCCTACCTCACCCGGTACCTAGCCGCCATGGCCCCGCCTTACAAGGGT GTTTTGGCCACTTGGGCAGGCATGTGCTGGGCTCGTGCCACAATTTTCTA CGGATCGGAGAAGGGGAAGGAGTTGTTGAGCCAGCACTACGGGGTGAAGG GAGCTTGGGCCGGCGCCATCCCTGCCCTCTTCACCTCCACCTTCGTCCAG CTCTGTAATATGCCAATCATTCGAGCCACCATCACGCTCCAGAACCCCGC GTCTCCCTACCAGAATACCTCCGAGGCGCTGCAGGCCATCTATTCAAAGG GAGGGATCAAGGGCCTCTGGCTCGGGACCTCGGCAGGGATTATGAAGACA GTTCCGAAATATATGACGGCCGTGGTGGTCAAGGACAAGATGGAGGACTG GTTGGAGGAGGTTCCGGCTGACGCGGACAATCCTCGCTCTCTCCTCGTCC AGCGTGCGGCCTTGAAAGCCGTTACTGCCGGCTTGGCGGGCGCCGTGCTG ACTAACCCGTTGGACGTGGTGAGGAACGAGTGCTTTAAGCGGGAGCAGAG CCTTAGGCCGACCTTGCGGGGGCTGGTGGAGGAGGAAGGGGCACGCTTCT TGTGGAGGGGGATGGGCAAGAACGTGGTGGCCGTGACGATCCCAGTGGCC GCCACCATCTTCCTCGCAGACATGATCGGAAGGGCCCGGGGCTTGTAG back to top