NO04G05080, NO04G05080 (gene) Nannochloropsis oceanica

Overview
NameNO04G05080
Unique NameNO04G05080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2747
Alignment locationchr4:1415241..1417987 +

Link to JBrowse

Properties
Property NameValue
DescriptionPre-mRNA polyadenylation factor Fip1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1415241..1417987 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1
Vocabulary: Biological Process
TermDefinition
GO:0098789pre-mRNA cleavage required for polyadenylation
Vocabulary: Cellular Component
TermDefinition
GO:0005847mRNA cleavage and polyadenylation specificity factor complex
Homology
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BLAST of NO04G05080 vs. NCBI_GenBank
Match: EWM28927.1 (Pre-mRNA polyadenylation factor Fip1 [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 2.900e-50
Identity = 116/183 (63.39%), Postives = 125/183 (68.31%), Query Frame = 0 
Query:  111 VMTGPARYRSFANKYVRPGLEGGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEGFGADDEEGKXXXXXXXXXXXADMFTDPLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEEKGWDRSGASPADYFNYGFVEESWALYSEKQIRLRWLAQKRDVQ 294
            VMTGP RYR+FANKY+RPGLEG  G                            XXXXXX         WEGFGAD+EEGK           ADMFT+PLKHPAIR Y + F DEDFPPTDQLRLRFKRTAFDIDI TVEEKGW+R+GAS ADYFNYGFVEESWALYSEKQIRLRWLAQK++ Q
Sbjct:  113 VMTGPPRYRAFANKYIRPGLEGATGV----ADAEGGGAGGHDKAPGEAKEGDEXXXXXXAEARRRALAWEGFGADEEEGK--EGGVGDEEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQ 289
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BLAST of NO04G05080 vs. NCBI_GenBank
Match: CBN75436.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 5.500e-9
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:  208 PLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEEKGWDRSGASPADYFNYGFVEESWALYSEKQIRLRW 286
            P K   +   +      ++PPT +L+    +TAFD+DI+ +EE+ W   G   AD+FNYGF E+SW +Y EKQ+R R+
Sbjct:  306 PSKGAPVATAKPSLKPGEYPPTAELQQSTGKTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLRNRY 383
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BLAST of NO04G05080 vs. NCBI_GenBank
Match: CCI40374.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 1.400e-7
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 0 
Query:  205 FTDPLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEEKGWDRSGASPADYFNYGFVEESWALYSEKQIRLRWLAQKRDVQTAQEEEIMLASILEAKAAEGRKFEEEEE 322
            FT   +H  +    ++F + D P  D +    +RTAFD+DI+ +EEK W + G   ADYFNYGF E  W  Y+ KQ+++R        +     ++  A++  A A   R  +  +E
Sbjct:  610 FTGLPQHNPVSTSSQEFGEND-PIDDAMMFGARRTAFDVDIDMLEEKPWRKPGIDIADYFNYGFDERGWREYAAKQLKIRRELALEKAKEQAARQVSTAAVAHANANAERASKASQE 725
The following BLAST results are available for this feature:
BLAST of NO04G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28927.12.900e-5063.39Pre-mRNA polyadenylation factor Fip1 [Nannochlorop... [more]
CBN75436.15.500e-941.03conserved unknown protein [Ectocarpus siliculosus][more]
CCI40374.11.400e-732.48unnamed protein product [Albugo candida][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007607NSK007607Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05080.1NO04G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100142g6gene1683Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05080.1NO04G05080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05080 ID=NO04G05080|Name=NO04G05080|organism=Nannochloropsis oceanica|type=gene|length=2747bp
ATGCCCCCCAAACGGCCAACGAGgtagggaaagcacagaaaaccaagggc
tgcgttcattataatatcgtcatccccatcatgtgcccctctctctccct
ccctttccttccagGTCCGCAGCAAGTAGCGTTGCTGCCGCAGACGTTTC
ACCTCCTGCTGCTAACGTAGAAGCAGCGGCCTCTGCTCCGGCGAAGAGAA
AGATGGGAGAAAAAGAGAAGATGAAGGAGGCGGCGGTTGAGGCACCACCG
CAACCTGCTCCATTAGACCCACGTGGACGTAAAGTAGCAGCCGTCGTCGA
GAATGAGGAAAAGGTGGGAGATGTAAACGAAGAGGAGATGGAGGAGGAAG
ATGAGGAAAGCACAGACGAGGAGGAAGATGAGGAGGAATGCGAGGACGAG
AGTGATGATGACATCAAGCTGGTCATGACGGGGCCAGCGCGGTACCGGTC
GTTTGCCAACAAGTACGTGCGGCCAGGCCTCGAGGGAGGCGCAGGGGCAG
GCACAGCAGGAAGTACAGCAGCATCAGCAGCCGCTACTATGGCGGAGGGA
GGAAAAGCGGCAGGGGAAGAGAAAGAAGGGGAGGAGGAGGAGGAAGCAGC
GGAGGAACGgtaggttgtttttggggtgtgtggagatacggtctcttagt
tctctgctgtcataatgctcaccatcactctttgcaatctcaccgttaca
gTCGACGGGCTGCCGCTTGGGAGGGGTTCGGCGCGGATGACGAGGAAGGG
AAGGAGGGCGAGGGCGAGAGGGAGGGCGAGGATGAAGCCGACATGTTCAC
AGACCCGCTGAAGCACCCAGgtaaggccagagggagagggagggagggag
tgaaggagggagtgaaggagggagggagggagggagagacgacagaatac
tagcaaggaaatttcatctcctctgacgctcttgtaatttttactcatcc
ctctctgttccccaactcctcccccctccttccttcccgccctcccctcg
tagCCATCCGTGATTACCGCGAGAAGTTCCACGACGAGGACTTTCCCCCC
ACGGATCAGCTCCGCCTCCGCTTCAAACGCACGGCCTTTGACATTGATAT
CAACACGGTGGAGGAGAAGGGGTGGGACCGCAGCGGGGCCTCACCAGCGG
ATTATTTCAACTACGGTTTCGTGGAGGAGAGCTGGGCGgtgcgtctccac
ttgccctccttcccgcctaccttccctccctctctccctcgctctgcatt
cgcagtacctgccattcatttctactcacattcatcggctgtcttgtcct
gtagcagaagtagcaggggcgacccatgtacactcacccctccctccctc
cctccctccctccctccctcccttaagCTCTACTCGGAAAAACAGATTCG
TCTCCGTTGGCTGGCACAGAAGAGGGATGTACAGACCGCGCAGGAGGAGG
AGATCATGCTAGCCTCCATCCTCGAAGCCAAGGCAGCCGAGGGCAGGAAG
TTCGAAGAGGAAGAAGAGGCCGAGTGGGGAAGGATAAGGGGAGGGGTGGA
GGGAGGAGGGGGTGGAGGGGAGGAGACGAATTTCTCACCTCCATTGAGGG
AGGGGTTGCCGCCGGCTATgtaccggggagagggagggaggagaggaggg
cgaggaggtgggggaggaccgtcggcgccctttcatcctgaccatggagg
tatagaaagagggagggaaggaaataaggaaggagggagggagggaggga
gagtatcctttgtttgtgcgaagagagacaccatttggctttgtcctttt
tatcattgttgtgaagacacccggacctcaatcactagaataacacgcat
gcatccatccttccacaggtggtcctccccctcactggcatgaagacggc
cagggaggccctcccccccttcctcccccccttcctccccctcttcctcc
tccgcagTGGCAGCAGCACCCGCACCACGGGGGCCCATCGCCACCTTTCC
ACGGCGGGGGAGGTAGAGGAGGAGGTAGCTTTCGGGGTGGGGGTAGGAGG
GGGGGTGGAAGGTTCTTTGAGGATGATTGGCGTGGAGGGGGAGGACGAGG
TGGAGGAAGGGGGAGAGGAAGGGGGGGGGCTCCACCGCATAACTTTGGCT
TCCCACCCCATGGCTTGCCGCCGCCTGAATTTTATCATGAAAGGGGTAGA
GAGGGAAGGAGAGAAGAAGAACGAGACGCCCCCCCGCCTCCGCCGAGAGG
AGTGCCGCCACCACGTTGGGAGGAGACCAGGCAGGGAGGAGGGGGAGGTG
ACAGGTGGGAAGAAGGAGGGAGGGAGAGCAGGGACCGACGGAGTGGTGGT
GGAGGAAGCGGCGCTGACGATGAGTGGTCGGTCTCCTCGAGGGGAAGTGG
CGGTCATCGAGAACGAGAAAGAGGGGAAAGGGATCGAAAGCGAGGCCGGA
GTCGGAGTCGGAGCCGGGAGAGTGAGCGCGGTGAGGATAGGAGAGAGCGC
CGTGAGCGGGGAGGAGGAGGTCGCGACGAAGAGCGCAAGCGGGTACGGAG
ATGAAGAGCTAAAGAAAATGGAGACTGACTGTCTGCGAAGTAAGTGTGGT
TCTAAGTCAGGAGTGTTTTTTGTTGCTTATGTGTGGCTTCCCAAGGCACA
GACGGAGGAGGTTTTCAAATCCTCAACTGCCATCTTCGGCGGTTGCGTGC
TTGTGGCGTTTGCGTTTTTGAGTCCCCTAGCTGTGTTCCCAGCTTGA
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protein sequence of NO04G05080.1

>NO04G05080.1-protein ID=NO04G05080.1-protein|Name=NO04G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MPPKRPTRSAASSVAAADVSPPAANVEAAASAPAKRKMGEKEKMKEAAVE
APPQPAPLDPRGRKVAAVVENEEKVGDVNEEEMEEEDEESTDEEEDEEEC
EDESDDDIKLVMTGPARYRSFANKYVRPGLEGGAGAGTAGSTAASAAATM
AEGGKAAGEEKEGEEEEEAAEERRRAAAWEGFGADDEEGKEGEGEREGED
EADMFTDPLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEE
KGWDRSGASPADYFNYGFVEESWALYSEKQIRLRWLAQKRDVQTAQEEEI
MLASILEAKAAEGRKFEEEEEAEWGRIRGGVEGGGGGGEETNFSPPLREG
LPPAIGSSTRTTGAHRHLSTAGEVEEEVAFGVGVGGGVEGSLRMIGVEGE
DEVEEGGEEGGGLHRITLASHPMACRRLNFIMKGVEREGEKKNETPPRLR
REECRHHVGRRPGREEGEVTGGKKEGGRAGTDGVVVEEAALTMSGRSPRG
EVAVIENEKEGKGIESEAGVGVGAGRVSAVRIGESAVSGEEEVATKSASG
YGDEELKKMETDCLRSKCGSKSGVFFVAYVWLPKAQTEEVFKSSTAIFGG
CVLVAFAFLSPLAVFPA*
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Synonyms
Publications