NO04G05020, NO04G05020 (gene) Nannochloropsis oceanica

Overview
NameNO04G05020
Unique NameNO04G05020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2394
Alignment locationchr4:1398187..1400580 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1398187..1400580 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05020.1NO04G05020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579792gene_2294Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05020.1NO04G05020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05020 ID=NO04G05020|Name=NO04G05020|organism=Nannochloropsis oceanica|type=gene|length=2394bp
ATGGGTCTCTTCGCCACAAGCACCTGTCGGCCCCCGAGCAAGACAAGTAC
TACCCACCGCCCATCCAAACGTTCCTCCTCCTCCCCTCCTCTCCTTGTTC
CCTCCCCTTTGGCCACCGTCCGCGGCCTCGGGTCACCGGCAGCCCGCGTA
CCTGTCAAGCAGCCAGTCCCCTGCTCAGAAGACGACGATACCGAGTCCGT
CTCTTCATCCTGCTGCTCCACTTCCCTTCCCTCAAGCTCATACGTGAAAA
AAAGAGACAAGCCAGTTACATCCTCTTCCCCTTCTCCCCTCCATGCGCGT
CCTGCTTGGGACTCGAGTCAGAAGGACCCTGAAAGATATCGTCTTTCCCT
GAAGGAGCAAGCCCGAAGAAAAGCCATCCTGCAATCCCCGCACAACGTCC
TGCTTCGAAGGAGGAGGGAGGAGGAGGAAGGGAGGGAGGAAGGGAAGGCG
AGAGGGCTAAGGATGTCCTCGACAGACCGAATGGGGGTATTTTCAATGTC
AGCTTCGGCGATTGGGGAGAGGGGAGCGAGACCGGTAGTATTAAATTGCA
GCACCGGCTCCAGTAGGTCGCCTTCCTCTTCATTCTTTTTTCGTTCCCTT
CAAGAAGGGTTGGGAGGAGGGGAAGGAGGAGGGGAAGTAAAAAGGACTAT
CACCGGCGAGGGACCTCGCAAATCATTTTCGTCATCGTTTTCAAAGGCAC
TGGCTGCAGTAAAACAAGGCAAGGGCAAGGGAAATAGCAGCAGCACGACG
AGCAGATGCGGCAGCAGCAGCAGCAATAGCAGCAGCACTAATGATAAGGG
ACGGAAGAAGCAAGCGCGCATCTTCTCTTCCTCCGCCTCCGCCATTCTTG
CCTCCTCCCCTTCTTCCTCTCTTCCCCCATTTCCCTCCCGCAAGCACCAC
AGCGGCAGCAGCAGCATGAATACCGCCCACTCAGATGCGATCGATTCATC
CCTTGAAGCCGAAATCGCTGCGTTTGAACGACGCCTGCAGTTGGAAGTGC
AGCAGCAGCAGCAGCAAAGGAAGCAACGAAATGGGTCGGGCTTACCACCT
TCATCTTCCTCTACCTCGTTCCCTTCCCGCCCTCCCTCCTCCTCTTCCTC
CGTCCGGTTCTCCTCCTCGTCGTCCGGGCCAGCTGAAACAAAAAGTCGCA
AGTCTTCTCCTTCTCTTCGCTCTCCCCCCTCTTCCTCCACTTCTTCCTCC
ACCCCCTCTCCACCTACCCGCTCCCAGCCTCCTCCTCCTCCATCGCAAGC
ACGCCGTCGTCCCACCAGCGCACCAGCGACTGCTCCGGTCTCAGCCCCTC
CTTCCCCCCCTCCCTCTTCCTCCGTCTCCTTTTCTCCCACCCCTCAAGAC
GTGGTGGCCTTCCTCGGCGCCCTCCAGGCCTGCGATAGCTCCTTCTCCTC
CTCCTCCTCCTCATCCCTCCTTTCCTCCTCTTTATTATCCTTCATCCTCA
CCTCCGCGGAGGAACAAACTTTAATCTCCTCGTTTCACCCAAACTCGCCC
TCCATCCCGCCCTCCCTCCTCCTCGCCCTCGCCACCCGCCTAGTGAATCG
GCTCACAGCTTTACAACATGGGAAACAACAATTAGAAAAACGAGTGGCTC
GGCTAGAAGAGGCAGAAAGGCAGGGAGGAAGGGAAGGAGGGAAAAAAGGA
GTGATGCGTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGG
AGGGGGGCGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGG
CCTCGATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATG
AGAAAGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGC
AACCATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCA
GCAGCAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGAT
GACAGGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAA
TGGGGTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTT
TCTTCCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCC
CCTCCTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTC
ATACGACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGG
GGGAGGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCT
CCTTCCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCT
GGGGAAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCAT
TAGGGCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGA
back to top

protein sequence of NO04G05020.1

>NO04G05020.1-protein ID=NO04G05020.1-protein|Name=NO04G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MGLFATSTCRPPSKTSTTHRPSKRSSSSPPLLVPSPLATVRGLGSPAARV
PVKQPVPCSEDDDTESVSSSCCSTSLPSSSYVKKRDKPVTSSSPSPLHAR
PAWDSSQKDPERYRLSLKEQARRKAILQSPHNVLLRRRREEEEGREEGKA
RGLRMSSTDRMGVFSMSASAIGERGARPVVLNCSTGSSRSPSSSFFFRSL
QEGLGGGEGGGEVKRTITGEGPRKSFSSSFSKALAAVKQGKGKGNSSSTT
SRCGSSSSNSSSTNDKGRKKQARIFSSSASAILASSPSSSLPPFPSRKHH
SGSSSMNTAHSDAIDSSLEAEIAAFERRLQLEVQQQQQQRKQRNGSGLPP
SSSSTSFPSRPPSSSSSVRFSSSSSGPAETKSRKSSPSLRSPPSSSTSSS
TPSPPTRSQPPPPPSQARRRPTSAPATAPVSAPPSPPPSSSVSFSPTPQD
VVAFLGALQACDSSFSSSSSSSLLSSSLLSFILTSAEEQTLISSFHPNSP
SIPPSLLLALATRLVNRLTALQHGKQQLEKRVARLEEAERQGGREGGKKG
VMRPFASSVDMGRMRGGGGRQEQQQQQQQQQRLASMAIPALAGHQKDWKM
RKAGKEEERAVLGLESATIRKVSMGKTVGSSGSSSSKSSSKSNRAVGKKD
DRKEKGRGSRKDGKGVNGVDAEEREVQREMMKSFFLHSTSDGHDNAYLLS
PPSAAAAAAADGSQEFSYDEEIELEEEKDEGEEGEGEEREEKENKPRAKP
PSSSSSFSKVHAPVTQLGKWATPGSWRQLRPQALGQRESKGRGKTSV*
back to top
Synonyms
Publications