NO04G05020.1, NO04G05020.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05020.1
Unique Name	NO04G05020.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2394
Alignment location	chr4:1398187..1400580 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1398187..1400580 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO04G05020.1 vs.

BLAST of NO04G05020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05020	NO04G05020	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05020.1	NO04G05020.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05020.1.cds1	NO04G05020.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1398187..1400580-
coding sequence from alignment at chr4:1398187..1400580-

mRNA sequence

>NO04G05020.1 ID=NO04G05020.1|Name=NO04G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp
ATGGGTCTCTTCGCCACAAGCACCTGTCGGCCCCCGAGCAAGACAAGTAC
TACCCACCGCCCATCCAAACGTTCCTCCTCCTCCCCTCCTCTCCTTGTTC
CCTCCCCTTTGGCCACCGTCCGCGGCCTCGGGTCACCGGCAGCCCGCGTA
CCTGTCAAGCAGCCAGTCCCCTGCTCAGAAGACGACGATACCGAGTCCGT
CTCTTCATCCTGCTGCTCCACTTCCCTTCCCTCAAGCTCATACGTGAAAA
AAAGAGACAAGCCAGTTACATCCTCTTCCCCTTCTCCCCTCCATGCGCGT
CCTGCTTGGGACTCGAGTCAGAAGGACCCTGAAAGATATCGTCTTTCCCT
GAAGGAGCAAGCCCGAAGAAAAGCCATCCTGCAATCCCCGCACAACGTCC
TGCTTCGAAGGAGGAGGGAGGAGGAGGAAGGGAGGGAGGAAGGGAAGGCG
AGAGGGCTAAGGATGTCCTCGACAGACCGAATGGGGGTATTTTCAATGTC
AGCTTCGGCGATTGGGGAGAGGGGAGCGAGACCGGTAGTATTAAATTGCA
GCACCGGCTCCAGTAGGTCGCCTTCCTCTTCATTCTTTTTTCGTTCCCTT
CAAGAAGGGTTGGGAGGAGGGGAAGGAGGAGGGGAAGTAAAAAGGACTAT
CACCGGCGAGGGACCTCGCAAATCATTTTCGTCATCGTTTTCAAAGGCAC
TGGCTGCAGTAAAACAAGGCAAGGGCAAGGGAAATAGCAGCAGCACGACG
AGCAGATGCGGCAGCAGCAGCAGCAATAGCAGCAGCACTAATGATAAGGG
ACGGAAGAAGCAAGCGCGCATCTTCTCTTCCTCCGCCTCCGCCATTCTTG
CCTCCTCCCCTTCTTCCTCTCTTCCCCCATTTCCCTCCCGCAAGCACCAC
AGCGGCAGCAGCAGCATGAATACCGCCCACTCAGATGCGATCGATTCATC
CCTTGAAGCCGAAATCGCTGCGTTTGAACGACGCCTGCAGTTGGAAGTGC
AGCAGCAGCAGCAGCAAAGGAAGCAACGAAATGGGTCGGGCTTACCACCT
TCATCTTCCTCTACCTCGTTCCCTTCCCGCCCTCCCTCCTCCTCTTCCTC
CGTCCGGTTCTCCTCCTCGTCGTCCGGGCCAGCTGAAACAAAAAGTCGCA
AGTCTTCTCCTTCTCTTCGCTCTCCCCCCTCTTCCTCCACTTCTTCCTCC
ACCCCCTCTCCACCTACCCGCTCCCAGCCTCCTCCTCCTCCATCGCAAGC
ACGCCGTCGTCCCACCAGCGCACCAGCGACTGCTCCGGTCTCAGCCCCTC
CTTCCCCCCCTCCCTCTTCCTCCGTCTCCTTTTCTCCCACCCCTCAAGAC
GTGGTGGCCTTCCTCGGCGCCCTCCAGGCCTGCGATAGCTCCTTCTCCTC
CTCCTCCTCCTCATCCCTCCTTTCCTCCTCTTTATTATCCTTCATCCTCA
CCTCCGCGGAGGAACAAACTTTAATCTCCTCGTTTCACCCAAACTCGCCC
TCCATCCCGCCCTCCCTCCTCCTCGCCCTCGCCACCCGCCTAGTGAATCG
GCTCACAGCTTTACAACATGGGAAACAACAATTAGAAAAACGAGTGGCTC
GGCTAGAAGAGGCAGAAAGGCAGGGAGGAAGGGAAGGAGGGAAAAAAGGA
GTGATGCGTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGG
AGGGGGGCGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGG
CCTCGATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATG
AGAAAGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGC
AACCATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCA
GCAGCAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGAT
GACAGGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAA
TGGGGTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTT
TCTTCCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCC
CCTCCTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTC
ATACGACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGG
GGGAGGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCT
CCTTCCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCT
GGGGAAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCAT
TAGGGCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGA

protein sequence of NO04G05020.1

>NO04G05020.1-protein ID=NO04G05020.1-protein|Name=NO04G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MGLFATSTCRPPSKTSTTHRPSKRSSSSPPLLVPSPLATVRGLGSPAARV
PVKQPVPCSEDDDTESVSSSCCSTSLPSSSYVKKRDKPVTSSSPSPLHAR
PAWDSSQKDPERYRLSLKEQARRKAILQSPHNVLLRRRREEEEGREEGKA
RGLRMSSTDRMGVFSMSASAIGERGARPVVLNCSTGSSRSPSSSFFFRSL
QEGLGGGEGGGEVKRTITGEGPRKSFSSSFSKALAAVKQGKGKGNSSSTT
SRCGSSSSNSSSTNDKGRKKQARIFSSSASAILASSPSSSLPPFPSRKHH
SGSSSMNTAHSDAIDSSLEAEIAAFERRLQLEVQQQQQQRKQRNGSGLPP
SSSSTSFPSRPPSSSSSVRFSSSSSGPAETKSRKSSPSLRSPPSSSTSSS
TPSPPTRSQPPPPPSQARRRPTSAPATAPVSAPPSPPPSSSVSFSPTPQD
VVAFLGALQACDSSFSSSSSSSLLSSSLLSFILTSAEEQTLISSFHPNSP
SIPPSLLLALATRLVNRLTALQHGKQQLEKRVARLEEAERQGGREGGKKG
VMRPFASSVDMGRMRGGGGRQEQQQQQQQQQRLASMAIPALAGHQKDWKM
RKAGKEEERAVLGLESATIRKVSMGKTVGSSGSSSSKSSSKSNRAVGKKD
DRKEKGRGSRKDGKGVNGVDAEEREVQREMMKSFFLHSTSDGHDNAYLLS
PPSAAAAAAADGSQEFSYDEEIELEEEKDEGEEGEGEEREEKENKPRAKP
PSSSSSFSKVHAPVTQLGKWATPGSWRQLRPQALGQRESKGRGKTSV*

mRNA from alignment at chr4:1398187..1400580-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05020.1 ID=NO04G05020.1|Name=NO04G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr4:1398187..1400580- (Nannochloropsis oceanica)
ATGGGTCTCTTCGCCACAAGCACCTGTCGGCCCCCGAGCAAGACAAGTAC
TACCCACCGCCCATCCAAACGTTCCTCCTCCTCCCCTCCTCTCCTTGTTC
CCTCCCCTTTGGCCACCGTCCGCGGCCTCGGGTCACCGGCAGCCCGCGTA
CCTGTCAAGCAGCCAGTCCCCTGCTCAGAAGACGACGATACCGAGTCCGT
CTCTTCATCCTGCTGCTCCACTTCCCTTCCCTCAAGCTCATACGTGAAAA
AAAGAGACAAGCCAGTTACATCCTCTTCCCCTTCTCCCCTCCATGCGCGT
CCTGCTTGGGACTCGAGTCAGAAGGACCCTGAAAGATATCGTCTTTCCCT
GAAGGAGCAAGCCCGAAGAAAAGCCATCCTGCAATCCCCGCACAACGTCC
TGCTTCGAAGGAGGAGGGAGGAGGAGGAAGGGAGGGAGGAAGGGAAGGCG
AGAGGGCTAAGGATGTCCTCGACAGACCGAATGGGGGTATTTTCAATGTC
AGCTTCGGCGATTGGGGAGAGGGGAGCGAGACCGGTAGTATTAAATTGCA
GCACCGGCTCCAGTAGGTCGCCTTCCTCTTCATTCTTTTTTCGTTCCCTT
CAAGAAGGGTTGGGAGGAGGGGAAGGAGGAGGGGAAGTAAAAAGGACTAT
CACCGGCGAGGGACCTCGCAAATCATTTTCGTCATCGTTTTCAAAGGCAC
TGGCTGCAGTAAAACAAGGCAAGGGCAAGGGAAATAGCAGCAGCACGACG
AGCAGATGCGGCAGCAGCAGCAGCAATAGCAGCAGCACTAATGATAAGGG
ACGGAAGAAGCAAGCGCGCATCTTCTCTTCCTCCGCCTCCGCCATTCTTG
CCTCCTCCCCTTCTTCCTCTCTTCCCCCATTTCCCTCCCGCAAGCACCAC
AGCGGCAGCAGCAGCATGAATACCGCCCACTCAGATGCGATCGATTCATC
CCTTGAAGCCGAAATCGCTGCGTTTGAACGACGCCTGCAGTTGGAAGTGC
AGCAGCAGCAGCAGCAAAGGAAGCAACGAAATGGGTCGGGCTTACCACCT
TCATCTTCCTCTACCTCGTTCCCTTCCCGCCCTCCCTCCTCCTCTTCCTC
CGTCCGGTTCTCCTCCTCGTCGTCCGGGCCAGCTGAAACAAAAAGTCGCA
AGTCTTCTCCTTCTCTTCGCTCTCCCCCCTCTTCCTCCACTTCTTCCTCC
ACCCCCTCTCCACCTACCCGCTCCCAGCCTCCTCCTCCTCCATCGCAAGC
ACGCCGTCGTCCCACCAGCGCACCAGCGACTGCTCCGGTCTCAGCCCCTC
CTTCCCCCCCTCCCTCTTCCTCCGTCTCCTTTTCTCCCACCCCTCAAGAC
GTGGTGGCCTTCCTCGGCGCCCTCCAGGCCTGCGATAGCTCCTTCTCCTC
CTCCTCCTCCTCATCCCTCCTTTCCTCCTCTTTATTATCCTTCATCCTCA
CCTCCGCGGAGGAACAAACTTTAATCTCCTCGTTTCACCCAAACTCGCCC
TCCATCCCGCCCTCCCTCCTCCTCGCCCTCGCCACCCGCCTAGTGAATCG
GCTCACAGCTTTACAACATGGGAAACAACAATTAGAAAAACGAGTGGCTC
GGCTAGAAGAGGCAGAAAGGCAGGGAGGAAGGGAAGGAGGGAAAAAAGGA
GTGATGCGTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGG
AGGGGGGCGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGG
CCTCGATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATG
AGAAAGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGC
AACCATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCA
GCAGCAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGAT
GACAGGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAA
TGGGGTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTT
TCTTCCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCC
CCTCCTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTC
ATACGACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGG
GGGAGGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCT
CCTTCCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCT
GGGGAAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCAT
TAGGGCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGA

Coding sequence (CDS) from alignment at chr4:1398187..1400580-

>NO04G05020.1 ID=NO04G05020.1|Name=NO04G05020.1|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at chr4:1398187..1400580- (Nannochloropsis oceanica)
ATGGGTCTCTTCGCCACAAGCACCTGTCGGCCCCCGAGCAAGACAAGTAC
TACCCACCGCCCATCCAAACGTTCCTCCTCCTCCCCTCCTCTCCTTGTTC
CCTCCCCTTTGGCCACCGTCCGCGGCCTCGGGTCACCGGCAGCCCGCGTA
CCTGTCAAGCAGCCAGTCCCCTGCTCAGAAGACGACGATACCGAGTCCGT
CTCTTCATCCTGCTGCTCCACTTCCCTTCCCTCAAGCTCATACGTGAAAA
AAAGAGACAAGCCAGTTACATCCTCTTCCCCTTCTCCCCTCCATGCGCGT
CCTGCTTGGGACTCGAGTCAGAAGGACCCTGAAAGATATCGTCTTTCCCT
GAAGGAGCAAGCCCGAAGAAAAGCCATCCTGCAATCCCCGCACAACGTCC
TGCTTCGAAGGAGGAGGGAGGAGGAGGAAGGGAGGGAGGAAGGGAAGGCG
AGAGGGCTAAGGATGTCCTCGACAGACCGAATGGGGGTATTTTCAATGTC
AGCTTCGGCGATTGGGGAGAGGGGAGCGAGACCGGTAGTATTAAATTGCA
GCACCGGCTCCAGTAGGTCGCCTTCCTCTTCATTCTTTTTTCGTTCCCTT
CAAGAAGGGTTGGGAGGAGGGGAAGGAGGAGGGGAAGTAAAAAGGACTAT
CACCGGCGAGGGACCTCGCAAATCATTTTCGTCATCGTTTTCAAAGGCAC
TGGCTGCAGTAAAACAAGGCAAGGGCAAGGGAAATAGCAGCAGCACGACG
AGCAGATGCGGCAGCAGCAGCAGCAATAGCAGCAGCACTAATGATAAGGG
ACGGAAGAAGCAAGCGCGCATCTTCTCTTCCTCCGCCTCCGCCATTCTTG
CCTCCTCCCCTTCTTCCTCTCTTCCCCCATTTCCCTCCCGCAAGCACCAC
AGCGGCAGCAGCAGCATGAATACCGCCCACTCAGATGCGATCGATTCATC
CCTTGAAGCCGAAATCGCTGCGTTTGAACGACGCCTGCAGTTGGAAGTGC
AGCAGCAGCAGCAGCAAAGGAAGCAACGAAATGGGTCGGGCTTACCACCT
TCATCTTCCTCTACCTCGTTCCCTTCCCGCCCTCCCTCCTCCTCTTCCTC
CGTCCGGTTCTCCTCCTCGTCGTCCGGGCCAGCTGAAACAAAAAGTCGCA
AGTCTTCTCCTTCTCTTCGCTCTCCCCCCTCTTCCTCCACTTCTTCCTCC
ACCCCCTCTCCACCTACCCGCTCCCAGCCTCCTCCTCCTCCATCGCAAGC
ACGCCGTCGTCCCACCAGCGCACCAGCGACTGCTCCGGTCTCAGCCCCTC
CTTCCCCCCCTCCCTCTTCCTCCGTCTCCTTTTCTCCCACCCCTCAAGAC
GTGGTGGCCTTCCTCGGCGCCCTCCAGGCCTGCGATAGCTCCTTCTCCTC
CTCCTCCTCCTCATCCCTCCTTTCCTCCTCTTTATTATCCTTCATCCTCA
CCTCCGCGGAGGAACAAACTTTAATCTCCTCGTTTCACCCAAACTCGCCC
TCCATCCCGCCCTCCCTCCTCCTCGCCCTCGCCACCCGCCTAGTGAATCG
GCTCACAGCTTTACAACATGGGAAACAACAATTAGAAAAACGAGTGGCTC
GGCTAGAAGAGGCAGAAAGGCAGGGAGGAAGGGAAGGAGGGAAAAAAGGA
GTGATGCGTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGG
AGGGGGGCGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGG
CCTCGATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATG
AGAAAGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGC
AACCATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCA
GCAGCAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGAT
GACAGGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAA
TGGGGTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTT
TCTTCCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCC
CCTCCTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTC
ATACGACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGG
GGGAGGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCT
CCTTCCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCT
GGGGAAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCAT
TAGGGCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGA

Synonyms

Publications