NO04G04690, NO04G04690 (gene) Nannochloropsis oceanica

Overview
NameNO04G04690
Unique NameNO04G04690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2621
Alignment locationchr4:1277149..1279769 +

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Properties
Property NameValue
DescriptionNucleotidyl transferase domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1277149..1279769 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO04G04690 vs. NCBI_GenBank
Match: PSC69495.1 (Altered inheritance rate of mitochondria 25 [Micractinium conductrix])

HSP 1 Score: 69.3 bits (168), Expect = 4.100e-8
Identity = 54/168 (32.14%), Postives = 78/168 (46.43%), Query Frame = 0
Query:  188 GAGGSLN-AWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEA 355
            G G S + AW+L  PGAS  ++++  PY + S+ A L G             +   Y SA TAR++A AAY  AV                         VG+ CT A+ +   KRG H+A + T+T      +  +S+ L L KG R+R  ED  VSK  + A+ E+
Sbjct:    8 GGGASQSMAWLLSVPGASRTVLDIRVPYNRASL-ADLLGH------------APAVYASAETARDMAVAAYRNAVKYSSMGT----------------DIVGIGCTCALATDREKRGEHKAFITTYT-----GVKERSFSLQLAKGVRSRFAEDTLVSKLLIKAVAES 141          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: XP_008618985.1 (hypothetical protein SDRG_14620 [Saprolegnia diclina VS20] >EQC27565.1 hypothetical protein SDRG_14620 [Saprolegnia diclina VS20])

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-7
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 0
Query:  184 ICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEATH 357
            +  SG GGS    +LGT GAS+ L+E+  PY + S+  +L+         G QL + G + S   A  + + A  R                  + +      +G+ CTAA+VS E +RG+HRA ++ HT+D         + L + KGARTR EED  V    + AL +A +
Sbjct:   24 VSVSGGGGSAVGEILGTCGASSTLLEVLVPYHRESMADFLQ-------VPGTQLETLG-FSSKDVATLMGKKALERG--------------RRLVPLDDAAACIGIGCTAALVSSEPRRGSHRAFLSLHTVD-----AIHHFKLEMEKGARTRKEEDECVGHLVVLALAKAAN 169          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: OQR94267.1 (hypothetical protein ACHHYP_01580 [Achlya hypogyna])

HSP 1 Score: 67.0 bits (162), Expect = 2.000e-7
Identity = 50/171 (29.24%), Postives = 81/171 (47.37%), Query Frame = 0
Query:  184 ICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEA 355
            +  SG GGS    +LGT GAS+ L+E+  PY + S+  YL             +P+        +++++A+    RA+                + +      +G+ C AA+VS E +RG+HRA ++ HT D        ++ L + KGAR+R EED  V    + AL +A
Sbjct:   24 VSLSGGGGSAVGEILGTAGASSTLLEVLVPYHRQSMVDYL------------HVPAPELEAMGFSSKDVAELMGKRAL----------EHGRRLVPLAEAASCIGIGCAAAIVSAEPRRGSHRAFLSLHTADS-----VHNFKLEMEKGARSRKEEDECVGHLIVLALAKA 167          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: XP_012205932.1 (hypothetical protein SPRG_21032 [Saprolegnia parasitica CBS 223.65] >KDO23366.1 hypothetical protein SPRG_21032 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.2 bits (160), Expect = 3.500e-7
Identity = 53/173 (30.64%), Postives = 81/173 (46.82%), Query Frame = 0
Query:  184 ICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEATH 357
            +  SG GGS    +LGT GAS+ L+E+  PY + S+  +L+  G      G        + S + A  + + A  R                  + +      +G+ CTAA+VS E +RG+HRA ++ HT+D         + L + KGARTR EED  V    + AL +A +
Sbjct:   24 VSVSGGGGSAVGEILGTCGASSTLLEVLVPYHRESMADFLQVPGAELEAFG--------FSSKNVATLMGKKALERG--------------RRLVPLDDAAGCIGIGCTAALVSSEPRRGSHRAFLSLHTVD-----AVHHFKLEMEKGARTRKEEDECVGHLVVLALAKAAN 169          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: OQS06754.1 (hypothetical protein THRCLA_01219 [Thraustotheca clavata])

HSP 1 Score: 66.2 bits (160), Expect = 3.500e-7
Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 0
Query:  184 ICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEATH 357
            +  +G GGS    +LGT GAS+ L+E+  PY + S+  +LK           +L + G + S S A  + + A   A                 + + +    VG+ CTAA+VS E +RG+HRA ++ HT +        ++ L L KGARTR EED  V    + A+ +A +
Sbjct:   22 VSLTGGGGSAIGEVLGTSGASSTLLEVIVPYHRQSMIDFLK-------VPPSELETMG-FSSQSVANLMGKKALEHA--------------RRLVSIDQAATCVGIGCTAALVSSEPRRGSHRAFLSVHTAN-----AIHNFKLELEKGARTRKEEDECVGYLIVLAMAKAAN 167          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: XP_020106019.1 (uncharacterized protein LOC109722380 [Ananas comosus])

HSP 1 Score: 65.1 bits (157), Expect = 7.800e-7
Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = 0
Query:  189 AGGSLNA--WMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKG-KFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEA 355
            AGG+  A  W++  PGASN ++E+  PY+K S+  +L            ++P+   + S  TA E+A  AY RA                 +++ R G   +GV  T ++ S   KRG HR +++T T D       ++  + L KG RTR EED   S   L A+ +A
Sbjct:   24 AGGASQALGWLMSVPGASNTILEVVVPYSKISMAQFL-----------SKIPT--QFTSQQTAEEMALVAYNRA-----------------LKLSRPGLPVLGVGFTGSLASTHPKRGDHRFYLSTRTYDS-----LRTSNVTLLKGLRTREEEDKVSSHFLLKAIADA 157          
BLAST of NO04G04690 vs. NCBI_GenBank
Match: XP_005652044.1 (hypothetical protein COCSUDRAFT_32019 [Coccomyxa subellipsoidea C-169] >EIE27500.1 hypothetical protein COCSUDRAFT_32019 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 65.1 bits (157), Expect = 7.800e-7
Identity = 49/165 (29.70%), Postives = 76/165 (46.06%), Query Frame = 0
Query:  187 SGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTXXXXXXXXXXXXXXXIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAAL 352
            +G G  +  W+L  PGAS  ++E   PY  G   A +  +  +            +Y    TA ++A+AAY +A                          +GV+CT A+ +   K+G H+ +VA H    DG + S++  + L+KGAR+R EEDA  S+  L AL
Sbjct:   27 AGGGAQVMTWLLSVPGASKTVLEARIPYGGGKSMAEILAKEPQ------------TYACTLTAVDMARAAYRQAAHLSEFGV----------------PILGVSCTCALATDRVKKGDHKVYVAVH----DG-VSSRACRVHLSKGARSRLEEDAVASRLVLRAL 158          
The following BLAST results are available for this feature:
BLAST of NO04G04690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
PSC69495.14.100e-832.14Altered inheritance rate of mitochondria 25 [Micra... [more]
XP_008618985.11.200e-731.79hypothetical protein SDRG_14620 [Saprolegnia dicli... [more]
OQR94267.12.000e-729.24hypothetical protein ACHHYP_01580 [Achlya hypogyna... [more]
XP_012205932.13.500e-730.64hypothetical protein SPRG_21032 [Saprolegnia paras... [more]
OQS06754.13.500e-731.21hypothetical protein THRCLA_01219 [Thraustotheca c... [more]
XP_020106019.17.800e-731.36uncharacterized protein LOC109722380 [Ananas comos... [more]
XP_005652044.17.800e-729.70hypothetical protein COCSUDRAFT_32019 [Coccomyxa s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009315NSK009315Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04690.1NO04G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298216gene_2257Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g9gene1747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04690.1NO04G04690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04690 ID=NO04G04690|Name=NO04G04690|organism=Nannochloropsis oceanica|type=gene|length=2621bp
AGACGTCGATCAATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCG
AACGAGTGCATGGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCAC
CAGAGCACCAGCAGCAAGCACTCTAAGCAGCGGGGGTAGAGACCAAGCAG
ACATCAACCAATCCAGGCGTGCTTCGGCCCAAGGCATGATTAGGAGCACT
CGgtacgtctatctgtatacacgcagcttctggtcttgtgccctccttcc
tgctcccccttttttcctccttacttgacccgttctcctccctctctccc
ctccctccctccctcttccccctgatccactcccaatagGCGTGGCCTTG
GCATTAACCACCACCCACCGTTCATCCTTATCGCCCTCCGCTGTATTACT
TGGTCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAGCACTAGTTCCTCT
CGCCAGCTCAAGCGCCACCACCAGCAGCACCATCAGCATCAGTCCCCGGG
GGTCTGCCTCTCCATCATCTTCAGTGGGGGAAGCAACGCCTTTTTGCTCA
TTCATACCATCAGCGTGGGCACCTTCGCCGGTCGTTTCGTGTATTTCATC
CTCTCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCCTCTTCTCCTCTCG
CACGCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCCCTCCACTTTCACC
AGCAGTGGTAGCTGCAGTGGCAACAGCGTACAGACCTTTTCCTCCCCCTC
TTCAACCATGACCGAATCCCCCATCCCCACCGAAGTCCAATCTGCCCTCC
ACGCCCTCTACAACATGCCGCCGTCCTCCTCCTCCCCTCCCTCCTCCTCC
TCCTCCCACCTCCACATCTGCATCTGCACCAGCGGCGCCGGTGGTTCACT
CAATGCATGGATGCTCGGTACGCCTGGAGCGAGCAACGTGTTAATTGAAC
TATCTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTACCTCAAAGGTGAA
GGAGGGCGGAAGGGAGGAAGCGGGGAGCAACTACCCTCCAACGGCTCCTA
CTGCTCTGCATCGACAGCACGAGAGCTCGCCCAGGCGGCGTACACGCGCG
CTGTGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGGCGGGAGGGAGGGA
GGGATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCGTAGCTTGCACGGC
GGCCGTGGTGTCAAGGGAAACCAAAAGGGGGGCACACAGGGCCCATGTAG
CAACTCACACACTGGACGAAGATGGAAAAATCGTCTCAAAGTCCTACTAT
TTGGCACTTACCAAAGGGGCTCGGACACGGACAGAGGAAGATGCTGAGGT
CAGTAAGGGGACTCTGGCTGCGCTATTGGAAGCCACCCACCCCTCCCTTC
ATCCCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTGGCTAGAGGCTCTG
TGCGTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGGATAAGCTGGTGCG
GGTAGTGGAGGAGGAGCAGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAAA
GAGGGGATGCACTTGACGCGCTGATGATCCACCACACTGTCGATCGTGTT
CTCTACGTCCCCTCCCCCCACGCACCCAGCGGCCTCAAAGCCTTTCCTTC
CTCCGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCACTCACTCCCTCCC
CCTCATCATCTACCCCGGGTCGTTCAACCCTCTCCACGACGGCCACCTCC
AACTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCATCCATCCCTCCATC
CCTCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCACCTGTAATGCCGA
TAAAGGTTTCATTGACCGAACTCTCCTCCTCCCACGCCTTTCCCAGTTCT
CCTCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTC
GTCCTGACCCGCGCCCCTCTCTTCGTAACGAAAGCCCGACTCTTTCCCAA
TTCTTACTTCCTCATCGGCGCGGACACGGCCCAACGGCTGCTGCAACCGA
AATATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAA
GGGAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTAGTATGCATGGTTG
TAGGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGAGGGTTCATGACGC
TGGATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCTCCCTCGGTCGATT
CTGGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTCGCGTCGACATGAG
CTCGACGGAAATCCGCGCACAGATGGCAGTGAAGGGGTGAAGCAGGGAGG
GAGGAAGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGTTAGCGTTCAAAGA
GAAATGCAGGGACGCCTGTCTTGGCCCCGGAGCAGCGCGTTTTACTTTCA
CCCTTCATGACAACAAGGAGAAAGGAGAGGTGAAGAAGGAGGAAGATAGC
CGCCGCCACACAGAAAGAAACAAGACGCCATCATAGGCAAATGACATTAC
TGTCTGTGTTGAGTCTTTTCCAGTCTTTTCTACTTTATTTTCCTTCAGGG
TACTAATATAATTCTTCCTCC
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protein sequence of NO04G04690.1

>NO04G04690.1-protein ID=NO04G04690.1-protein|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MIRSTRRGLGINHHPPFILIALRCITWSLGGGYLPLVSALVPLASSSATT
SSTISISPRGSASPSSSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSS
FSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESP
IPTEVQSALHALYNMPPSSSSPPSSSSSHLHICICTSGAGGSLNAWMLGT
PGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTAR
ELAQAAYTRAVTSAVAGGEEEGGREGGIEVLRKGKFVGVACTAAVVSRET
KRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAA
LLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQK
EGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSVPLLSP
SLPPSLTPSPSSSTPGRSTLSTTATSNSLMPPRPSLAPSIPPSLPPSPPS
SSRYPPVMPIKVSLTELSSSHAFPSSPLPPLSPSLPPSLSPFSS*
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Synonyms
Publications