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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1277149..1279769 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04690.1 vs.
Match: EWM28855.1 (nucleotidyl transferase domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 317.0 bits (811), Expect = 1.100e-82 Identity = 254/567 (44.80%), Postives = 322/567 (56.79%), Query Frame = 0
Query: 1 MIRSTRRGLGINHHPPFILIALRCITWSLGG--GYLPLVSALVPLASSSATTSSTISISPRGSASPS-----------------SSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSSFSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESPIPTEVQSALHALYNMPPSSS-SPPSSSSSHLHICICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTSAVAGGE------EEGGREGGIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQKEGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSV---PLLSPSLPPSLTP---SPSSSTP---GRSTLSTTATSNSLMPPRPSLAPSIPPSLPPSPPSSSRYPPVMPIKVSLTELSSSHAFPSSPLPPLS 533
MI+STRRGLGIN P F+L+ LRCITWSLG G +P S L + S G A PS S +G +P +P + + S ++ +SF+SF+ P SR SS S SG P STM IP +VQ+AL LY PP+S S P + S L IC+CT+GAGG+L WMLGT GASNVL+EL+SPYAKG+I YL GR+ S PS+GSYCSASTA ELA+AAY RAV AV G E EEGGREG + VLR+G FVGVACTA+VVS + KRG HRAH+AT++LD +G+++++ Y L+LTK AR+R EED VSK TLAAL+EATHP L P +SS S SW E L V G+GG GGED+LV EG E G+E GDALDALM+H TVDRV+++P P AP+G + +PSS P +P PP+ +P P S P G L+ A +L S P S PS PS + P++ ++S + S+ +P S
Sbjct: 1 MIKSTRRGLGINQRPSFLLVVLRCITWSLGSVHGPIPASSFTPSLGCPGSLARSDPLRGALGGALPSPCRPFFGWSKASAALHASGLGWISPA---LPRSITSTAPFSFGGGRKAQEASFTSFNGVPGGPSRLFHVKGRTSVRALSSASPSG--------PVSTMI-CAIPPDVQAALRTLYTAPPASQPSRPPTPPSRLQICVCTTGAGGALGQWMLGTAGASNVLLELASPYAKGAIAVYL--AHGRREPS--LPPSDGSYCSASTASELARAAYHRAVALAVGGAEGGKDSGEEGGREGQVRVLREGTFVGVACTASVVSSQAKRGEHRAHIATYSLDVEGRVLARGYSLSLTKQARSRVEEDIAVSKATLAALMEATHP-LGP--DASSPSFSWREFLPVGVGEGGLGGEDRLV--------EGEDEAGREEGDALDALMVHQTVDRVVFIPCPQAPNGFRLYPSSTTVFPASTPPSPPAFSPLIVYPGSFNPLHEGHIQLARAA---------QTLLASHPSSASPSVPS---FSPLVLFEISTSNADKGMTERSALMPRFS 528
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp
AGACGTCGATCAATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCG
AACGAGTGCATGGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCAC
CAGAGCACCAGCAGCAAGCACTCTAAGCAGCGGGGGTAGAGACCAAGCAG
ACATCAACCAATCCAGGCGTGCTTCGGCCCAAGGCATGATTAGGAGCACT
CGGCGTGGCCTTGGCATTAACCACCACCCACCGTTCATCCTTATCGCCCT
CCGCTGTATTACTTGGTCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAG
CACTAGTTCCTCTCGCCAGCTCAAGCGCCACCACCAGCAGCACCATCAGC
ATCAGTCCCCGGGGGTCTGCCTCTCCATCATCTTCAGTGGGGGAAGCAAC
GCCTTTTTGCTCATTCATACCATCAGCGTGGGCACCTTCGCCGGTCGTTT
CGTGTATTTCATCCTCTCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCC
TCTTCTCCTCTCGCACGCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCC
CTCCACTTTCACCAGCAGTGGTAGCTGCAGTGGCAACAGCGTACAGACCT
TTTCCTCCCCCTCTTCAACCATGACCGAATCCCCCATCCCCACCGAAGTC
CAATCTGCCCTCCACGCCCTCTACAACATGCCGCCGTCCTCCTCCTCCCC
TCCCTCCTCCTCCTCCTCCCACCTCCACATCTGCATCTGCACCAGCGGCG
CCGGTGGTTCACTCAATGCATGGATGCTCGGTACGCCTGGAGCGAGCAAC
GTGTTAATTGAACTATCTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTA
CCTCAAAGGTGAAGGAGGGCGGAAGGGAGGAAGCGGGGAGCAACTACCCT
CCAACGGCTCCTACTGCTCTGCATCGACAGCACGAGAGCTCGCCCAGGCG
GCGTACACGCGCGCTGTGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGG
CGGGAGGGAGGGAGGGATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCG
TAGCTTGCACGGCGGCCGTGGTGTCAAGGGAAACCAAAAGGGGGGCACAC
AGGGCCCATGTAGCAACTCACACACTGGACGAAGATGGAAAAATCGTCTC
AAAGTCCTACTATTTGGCACTTACCAAAGGGGCTCGGACACGGACAGAGG
AAGATGCTGAGGTCAGTAAGGGGACTCTGGCTGCGCTATTGGAAGCCACC
CACCCCTCCCTTCATCCCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTG
GCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGG
ATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAGAAGGAGGGAGGGAAGGAG
GGAGGGAAGGAAAGAGGGGATGCACTTGACGCGCTGATGATCCACCACAC
TGTCGATCGTGTTCTCTACGTCCCCTCCCCCCACGCACCCAGCGGCCTCA
AAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCA
CTCACTCCCTCCCCCTCATCATCTACCCCGGGTCGTTCAACCCTCTCCAC
GACGGCCACCTCCAACTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCAT
CCATCCCTCCATCCCTCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCA
CCTGTAATGCCGATAAAGGTTTCATTGACCGAACTCTCCTCCTCCCACGC
CTTTCCCAGTTCTCCTCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCC
TCTCCCCCTTCTCGTCCTGACCCGCGCCCCTCTCTTCGTAACGAAAGCCC
GACTCTTTCCCAATTCTTACTTCCTCATCGGCGCGGACACGGCCCAACGG
CTGCTGCAACCGAAATATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGG
AGGGAAGGAGGAAGGGAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTA
GTATGCATGGTTGTAGGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGA
GGGTTCATGACGCTGGATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCT
CCCTCGGTCGATTCTGGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTC
GCGTCGACATGAGCTCGACGGAAATCCGCGCACAGATGGCAGTGAAGGGG
TGAAGCAGGGAGGGAGGAAGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGT
TAGCGTTCAAAGAGAAATGCAGGGACGCCTGTCTTGGCCCCGGAGCAGCG
CGTTTTACTTTCACCCTTCATGACAACAAGGAGAAAGGAGAGGTGAAGAA
GGAGGAAGATAGCCGCCGCCACACAGAAAGAAACAAGACGCCATCATAGG
CAAATGACATTACTGTCTGTGTTGAGTCTTTTCCAGTCTTTTCTACTTTA
TTTTCCTTCAGGGTACTAATATAATTCTTCCTCC back to topprotein sequence of NO04G04690.1 >NO04G04690.1-protein ID=NO04G04690.1-protein|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MIRSTRRGLGINHHPPFILIALRCITWSLGGGYLPLVSALVPLASSSATT
SSTISISPRGSASPSSSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSS
FSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESP
IPTEVQSALHALYNMPPSSSSPPSSSSSHLHICICTSGAGGSLNAWMLGT
PGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTAR
ELAQAAYTRAVTSAVAGGEEEGGREGGIEVLRKGKFVGVACTAAVVSRET
KRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAA
LLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQK
EGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSVPLLSP
SLPPSLTPSPSSSTPGRSTLSTTATSNSLMPPRPSLAPSIPPSLPPSPPS
SSRYPPVMPIKVSLTELSSSHAFPSSPLPPLSPSLPPSLSPFSS* back to topmRNA from alignment at chr4:1277149..1279769+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2621bp|location=Sequence derived from alignment at chr4:1277149..1279769+ (Nannochloropsis oceanica)
AGACGTCGATCAATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCG
AACGAGTGCATGGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCAC
CAGAGCACCAGCAGCAAGCACTCTAAGCAGCGGGGGTAGAGACCAAGCAG
ACATCAACCAATCCAGGCGTGCTTCGGCCCAAGGCATGATTAGGAGCACT
CGGTACGTCTATCTGTATACACGCAGCTTCTGGTCTTGTGCCCTCCTTCC
TGCTCCCCCTTTTTTCCTCCTTACTTGACCCGTTCTCCTCCCTCTCTCCC
CTCCCTCCCTCCCTCTTCCCCCTGATCCACTCCCAATAGGCGTGGCCTTG
GCATTAACCACCACCCACCGTTCATCCTTATCGCCCTCCGCTGTATTACT
TGGTCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAGCACTAGTTCCTCT
CGCCAGCTCAAGCGCCACCACCAGCAGCACCATCAGCATCAGTCCCCGGG
GGTCTGCCTCTCCATCATCTTCAGTGGGGGAAGCAACGCCTTTTTGCTCA
TTCATACCATCAGCGTGGGCACCTTCGCCGGTCGTTTCGTGTATTTCATC
CTCTCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCCTCTTCTCCTCTCG
CACGCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCCCTCCACTTTCACC
AGCAGTGGTAGCTGCAGTGGCAACAGCGTACAGACCTTTTCCTCCCCCTC
TTCAACCATGACCGAATCCCCCATCCCCACCGAAGTCCAATCTGCCCTCC
ACGCCCTCTACAACATGCCGCCGTCCTCCTCCTCCCCTCCCTCCTCCTCC
TCCTCCCACCTCCACATCTGCATCTGCACCAGCGGCGCCGGTGGTTCACT
CAATGCATGGATGCTCGGTACGCCTGGAGCGAGCAACGTGTTAATTGAAC
TATCTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTACCTCAAAGGTGAA
GGAGGGCGGAAGGGAGGAAGCGGGGAGCAACTACCCTCCAACGGCTCCTA
CTGCTCTGCATCGACAGCACGAGAGCTCGCCCAGGCGGCGTACACGCGCG
CTGTGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGGCGGGAGGGAGGGA
GGGATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCGTAGCTTGCACGGC
GGCCGTGGTGTCAAGGGAAACCAAAAGGGGGGCACACAGGGCCCATGTAG
CAACTCACACACTGGACGAAGATGGAAAAATCGTCTCAAAGTCCTACTAT
TTGGCACTTACCAAAGGGGCTCGGACACGGACAGAGGAAGATGCTGAGGT
CAGTAAGGGGACTCTGGCTGCGCTATTGGAAGCCACCCACCCCTCCCTTC
ATCCCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTGGCTAGAGGCTCTG
TGCGTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGGATAAGCTGGTGCG
GGTAGTGGAGGAGGAGCAGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAAA
GAGGGGATGCACTTGACGCGCTGATGATCCACCACACTGTCGATCGTGTT
CTCTACGTCCCCTCCCCCCACGCACCCAGCGGCCTCAAAGCCTTTCCTTC
CTCCGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCACTCACTCCCTCCC
CCTCATCATCTACCCCGGGTCGTTCAACCCTCTCCACGACGGCCACCTCC
AACTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCATCCATCCCTCCATC
CCTCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCACCTGTAATGCCGA
TAAAGGTTTCATTGACCGAACTCTCCTCCTCCCACGCCTTTCCCAGTTCT
CCTCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTC
GTCCTGACCCGCGCCCCTCTCTTCGTAACGAAAGCCCGACTCTTTCCCAA
TTCTTACTTCCTCATCGGCGCGGACACGGCCCAACGGCTGCTGCAACCGA
AATATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAA
GGGAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTAGTATGCATGGTTG
TAGGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGAGGGTTCATGACGC
TGGATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCTCCCTCGGTCGATT
CTGGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTCGCGTCGACATGAG
CTCGACGGAAATCCGCGCACAGATGGCAGTGAAGGGGTGAAGCAGGGAGG
GAGGAAGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGTTAGCGTTCAAAGA
GAAATGCAGGGACGCCTGTCTTGGCCCCGGAGCAGCGCGTTTTACTTTCA
CCCTTCATGACAACAAGGAGAAAGGAGAGGTGAAGAAGGAGGAAGATAGC
CGCCGCCACACAGAAAGAAACAAGACGCCATCATAGGCAAATGACATTAC
TGTCTGTGTTGAGTCTTTTCCAGTCTTTTCTACTTTATTTTCCTTCAGGG
TACTAATATAATTCTTCCTCC back to topCoding sequence (CDS) from alignment at chr4:1277149..1279769+ >NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr4:1277149..1279769+ (Nannochloropsis oceanica)
ATGATTAGGAGCACTCGGCGTGGCCTTGGCATTAACCACCACCCACCGTT
CATCCTTATCGCCCTCCGCTGTATTACTTGGTCCTTGGGCGGTGGATACT
TGCCCTTAGTCTCAGCACTAGTTCCTCTCGCCAGCTCAAGCGCCACCACC
AGCAGCACCATCAGCATCAGTCCCCGGGGGTCTGCCTCTCCATCATCTTC
AGTGGGGGAAGCAACGCCTTTTTGCTCATTCATACCATCAGCGTGGGCAC
CTTCGCCGGTCGTTTCGTGTATTTCATCCTCTCGGTCTGTCACTTCCTCT
TTCTCCTCTTTCTCCTCTTCTCCTCTCGCACGCTCACGAAGGGGATCTTC
GGCCTCTCTTTTCCCCTCCACTTTCACCAGCAGTGGTAGCTGCAGTGGCA
ACAGCGTACAGACCTTTTCCTCCCCCTCTTCAACCATGACCGAATCCCCC
ATCCCCACCGAAGTCCAATCTGCCCTCCACGCCCTCTACAACATGCCGCC
GTCCTCCTCCTCCCCTCCCTCCTCCTCCTCCTCCCACCTCCACATCTGCA
TCTGCACCAGCGGCGCCGGTGGTTCACTCAATGCATGGATGCTCGGTACG
CCTGGAGCGAGCAACGTGTTAATTGAACTATCTTCCCCCTACGCCAAGGG
CTCTATCAAGGCCTACCTCAAAGGTGAAGGAGGGCGGAAGGGAGGAAGCG
GGGAGCAACTACCCTCCAACGGCTCCTACTGCTCTGCATCGACAGCACGA
GAGCTCGCCCAGGCGGCGTACACGCGCGCTGTGACATCTGCAGTGGCGGG
TGGGGAGGAGGAGGGCGGGAGGGAGGGAGGGATAGAGGTGTTGCGGAAGG
GGAAGTTCGTCGGCGTAGCTTGCACGGCGGCCGTGGTGTCAAGGGAAACC
AAAAGGGGGGCACACAGGGCCCATGTAGCAACTCACACACTGGACGAAGA
TGGAAAAATCGTCTCAAAGTCCTACTATTTGGCACTTACCAAAGGGGCTC
GGACACGGACAGAGGAAGATGCTGAGGTCAGTAAGGGGACTCTGGCTGCG
CTATTGGAAGCCACCCACCCCTCCCTTCATCCCTCGTCCTCGTCTTCGTC
CTCGTCCTCGTCGTGGCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAGGCG
GGGCGGGCGGGGAGGATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAGAAG
GAGGGAGGGAAGGAGGGAGGGAAGGAAAGAGGGGATGCACTTGACGCGCT
GATGATCCACCACACTGTCGATCGTGTTCTCTACGTCCCCTCCCCCCACG
CACCCAGCGGCCTCAAAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCGCCC
TCCCTCCCTCCCTCACTCACTCCCTCCCCCTCATCATCTACCCCGGGTCG
TTCAACCCTCTCCACGACGGCCACCTCCAACTCGCTCATGCCGCCCAGAC
CCTCCTTGGCTCCATCCATCCCTCCATCCCTCCCTCCCTCCCCCCCGTCC
TCTTCGAGATATCCACCTGTAATGCCGATAAAGGTTTCATTGACCGAACT
CTCCTCCTCCCACGCCTTTCCCAGTTCTCCTCTCCCTCCTCTTTCTCCCT
CCCTCCCTCCCTCCCTCTCCCCCTTCTCGTCCTGA back to top
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