NO04G04690.1, NO04G04690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04690.1
Unique NameNO04G04690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2484
Alignment locationchr4:1277149..1279769 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1277149..1279769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04690.1 vs.
Match: EWM28855.1 (nucleotidyl transferase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 1.100e-82
Identity = 254/567 (44.80%), Postives = 322/567 (56.79%), Query Frame = 0 
Query:    1 MIRSTRRGLGINHHPPFILIALRCITWSLGG--GYLPLVSALVPLASSSATTSSTISISPRGSASPS-----------------SSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSSFSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESPIPTEVQSALHALYNMPPSSS-SPPSSSSSHLHICICTSGAGGSLNAWMLGTPGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTARELAQAAYTRAVTSAVAGGE------EEGGREGGIEVLRKGKFVGVACTAAVVSRETKRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAALLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQKEGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSV---PLLSPSLPPSLTP---SPSSSTP---GRSTLSTTATSNSLMPPRPSLAPSIPPSLPPSPPSSSRYPPVMPIKVSLTELSSSHAFPSSPLPPLS 533
            MI+STRRGLGIN  P F+L+ LRCITWSLG   G +P  S    L    +   S       G A PS                 S +G  +P    +P +   +   S     ++  +SF+SF+  P   SR             SS S SG        P STM    IP +VQ+AL  LY  PP+S  S P +  S L IC+CT+GAGG+L  WMLGT GASNVL+EL+SPYAKG+I  YL    GR+  S    PS+GSYCSASTA ELA+AAY RAV  AV G E      EEGGREG + VLR+G FVGVACTA+VVS + KRG HRAH+AT++LD +G+++++ Y L+LTK AR+R EED  VSK TLAAL+EATHP L P   +SS S SW E L V  G+GG GGED+LV        EG  E G+E GDALDALM+H TVDRV+++P P AP+G + +PSS    P  +P  PP+ +P    P S  P   G   L+  A          +L  S P S  PS PS   + P++  ++S +         S+ +P  S
Sbjct:    1 MIKSTRRGLGINQRPSFLLVVLRCITWSLGSVHGPIPASSFTPSLGCPGSLARSDPLRGALGGALPSPCRPFFGWSKASAALHASGLGWISPA---LPRSITSTAPFSFGGGRKAQEASFTSFNGVPGGPSRLFHVKGRTSVRALSSASPSG--------PVSTMI-CAIPPDVQAALRTLYTAPPASQPSRPPTPPSRLQICVCTTGAGGALGQWMLGTAGASNVLLELASPYAKGAIAVYL--AHGRREPS--LPPSDGSYCSASTASELARAAYHRAVALAVGGAEGGKDSGEEGGREGQVRVLREGTFVGVACTASVVSSQAKRGEHRAHIATYSLDVEGRVLARGYSLSLTKQARSRVEEDIAVSKATLAALMEATHP-LGP--DASSPSFSWREFLPVGVGEGGLGGEDRLV--------EGEDEAGREEGDALDALMVHQTVDRVVFIPCPQAPNGFRLYPSSTTVFPASTPPSPPAFSPLIVYPGSFNPLHEGHIQLARAA---------QTLLASHPSSASPSVPS---FSPLVLFEISTSNADKGMTERSALMPRFS 528
The following BLAST results are available for this feature:
BLAST of NO04G04690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400Expect = 1.10e-82 / Id = 44.80SequenceEWM28855.1
Match NameE-valueIdentityDescription
EWM28855.11.100e-8244.80nucleotidyl transferase domain-containing protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04690NO04G04690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04690.1NO04G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04690.1.cds1NO04G04690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04690.1.cds2NO04G04690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp
AGACGTCGATCAATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCG
AACGAGTGCATGGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCAC
CAGAGCACCAGCAGCAAGCACTCTAAGCAGCGGGGGTAGAGACCAAGCAG
ACATCAACCAATCCAGGCGTGCTTCGGCCCAAGGCATGATTAGGAGCACT
CGGCGTGGCCTTGGCATTAACCACCACCCACCGTTCATCCTTATCGCCCT
CCGCTGTATTACTTGGTCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAG
CACTAGTTCCTCTCGCCAGCTCAAGCGCCACCACCAGCAGCACCATCAGC
ATCAGTCCCCGGGGGTCTGCCTCTCCATCATCTTCAGTGGGGGAAGCAAC
GCCTTTTTGCTCATTCATACCATCAGCGTGGGCACCTTCGCCGGTCGTTT
CGTGTATTTCATCCTCTCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCC
TCTTCTCCTCTCGCACGCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCC
CTCCACTTTCACCAGCAGTGGTAGCTGCAGTGGCAACAGCGTACAGACCT
TTTCCTCCCCCTCTTCAACCATGACCGAATCCCCCATCCCCACCGAAGTC
CAATCTGCCCTCCACGCCCTCTACAACATGCCGCCGTCCTCCTCCTCCCC
TCCCTCCTCCTCCTCCTCCCACCTCCACATCTGCATCTGCACCAGCGGCG
CCGGTGGTTCACTCAATGCATGGATGCTCGGTACGCCTGGAGCGAGCAAC
GTGTTAATTGAACTATCTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTA
CCTCAAAGGTGAAGGAGGGCGGAAGGGAGGAAGCGGGGAGCAACTACCCT
CCAACGGCTCCTACTGCTCTGCATCGACAGCACGAGAGCTCGCCCAGGCG
GCGTACACGCGCGCTGTGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGG
CGGGAGGGAGGGAGGGATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCG
TAGCTTGCACGGCGGCCGTGGTGTCAAGGGAAACCAAAAGGGGGGCACAC
AGGGCCCATGTAGCAACTCACACACTGGACGAAGATGGAAAAATCGTCTC
AAAGTCCTACTATTTGGCACTTACCAAAGGGGCTCGGACACGGACAGAGG
AAGATGCTGAGGTCAGTAAGGGGACTCTGGCTGCGCTATTGGAAGCCACC
CACCCCTCCCTTCATCCCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTG
GCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGG
ATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAGAAGGAGGGAGGGAAGGAG
GGAGGGAAGGAAAGAGGGGATGCACTTGACGCGCTGATGATCCACCACAC
TGTCGATCGTGTTCTCTACGTCCCCTCCCCCCACGCACCCAGCGGCCTCA
AAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCA
CTCACTCCCTCCCCCTCATCATCTACCCCGGGTCGTTCAACCCTCTCCAC
GACGGCCACCTCCAACTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCAT
CCATCCCTCCATCCCTCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCA
CCTGTAATGCCGATAAAGGTTTCATTGACCGAACTCTCCTCCTCCCACGC
CTTTCCCAGTTCTCCTCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCC
TCTCCCCCTTCTCGTCCTGACCCGCGCCCCTCTCTTCGTAACGAAAGCCC
GACTCTTTCCCAATTCTTACTTCCTCATCGGCGCGGACACGGCCCAACGG
CTGCTGCAACCGAAATATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGG
AGGGAAGGAGGAAGGGAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTA
GTATGCATGGTTGTAGGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGA
GGGTTCATGACGCTGGATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCT
CCCTCGGTCGATTCTGGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTC
GCGTCGACATGAGCTCGACGGAAATCCGCGCACAGATGGCAGTGAAGGGG
TGAAGCAGGGAGGGAGGAAGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGT
TAGCGTTCAAAGAGAAATGCAGGGACGCCTGTCTTGGCCCCGGAGCAGCG
CGTTTTACTTTCACCCTTCATGACAACAAGGAGAAAGGAGAGGTGAAGAA
GGAGGAAGATAGCCGCCGCCACACAGAAAGAAACAAGACGCCATCATAGG
CAAATGACATTACTGTCTGTGTTGAGTCTTTTCCAGTCTTTTCTACTTTA
TTTTCCTTCAGGGTACTAATATAATTCTTCCTCC
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protein sequence of NO04G04690.1

>NO04G04690.1-protein ID=NO04G04690.1-protein|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MIRSTRRGLGINHHPPFILIALRCITWSLGGGYLPLVSALVPLASSSATT
SSTISISPRGSASPSSSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSS
FSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESP
IPTEVQSALHALYNMPPSSSSPPSSSSSHLHICICTSGAGGSLNAWMLGT
PGASNVLIELSSPYAKGSIKAYLKGEGGRKGGSGEQLPSNGSYCSASTAR
ELAQAAYTRAVTSAVAGGEEEGGREGGIEVLRKGKFVGVACTAAVVSRET
KRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAA
LLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQK
EGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSVPLLSP
SLPPSLTPSPSSSTPGRSTLSTTATSNSLMPPRPSLAPSIPPSLPPSPPS
SSRYPPVMPIKVSLTELSSSHAFPSSPLPPLSPSLPPSLSPFSS*
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mRNA from alignment at chr4:1277149..1279769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2621bp|location=Sequence derived from alignment at chr4:1277149..1279769+ (Nannochloropsis oceanica)
AGACGTCGATCAATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCG
AACGAGTGCATGGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCAC
CAGAGCACCAGCAGCAAGCACTCTAAGCAGCGGGGGTAGAGACCAAGCAG
ACATCAACCAATCCAGGCGTGCTTCGGCCCAAGGCATGATTAGGAGCACT
CGGTACGTCTATCTGTATACACGCAGCTTCTGGTCTTGTGCCCTCCTTCC
TGCTCCCCCTTTTTTCCTCCTTACTTGACCCGTTCTCCTCCCTCTCTCCC
CTCCCTCCCTCCCTCTTCCCCCTGATCCACTCCCAATAGGCGTGGCCTTG
GCATTAACCACCACCCACCGTTCATCCTTATCGCCCTCCGCTGTATTACT
TGGTCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAGCACTAGTTCCTCT
CGCCAGCTCAAGCGCCACCACCAGCAGCACCATCAGCATCAGTCCCCGGG
GGTCTGCCTCTCCATCATCTTCAGTGGGGGAAGCAACGCCTTTTTGCTCA
TTCATACCATCAGCGTGGGCACCTTCGCCGGTCGTTTCGTGTATTTCATC
CTCTCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCCTCTTCTCCTCTCG
CACGCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCCCTCCACTTTCACC
AGCAGTGGTAGCTGCAGTGGCAACAGCGTACAGACCTTTTCCTCCCCCTC
TTCAACCATGACCGAATCCCCCATCCCCACCGAAGTCCAATCTGCCCTCC
ACGCCCTCTACAACATGCCGCCGTCCTCCTCCTCCCCTCCCTCCTCCTCC
TCCTCCCACCTCCACATCTGCATCTGCACCAGCGGCGCCGGTGGTTCACT
CAATGCATGGATGCTCGGTACGCCTGGAGCGAGCAACGTGTTAATTGAAC
TATCTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTACCTCAAAGGTGAA
GGAGGGCGGAAGGGAGGAAGCGGGGAGCAACTACCCTCCAACGGCTCCTA
CTGCTCTGCATCGACAGCACGAGAGCTCGCCCAGGCGGCGTACACGCGCG
CTGTGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGGCGGGAGGGAGGGA
GGGATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCGTAGCTTGCACGGC
GGCCGTGGTGTCAAGGGAAACCAAAAGGGGGGCACACAGGGCCCATGTAG
CAACTCACACACTGGACGAAGATGGAAAAATCGTCTCAAAGTCCTACTAT
TTGGCACTTACCAAAGGGGCTCGGACACGGACAGAGGAAGATGCTGAGGT
CAGTAAGGGGACTCTGGCTGCGCTATTGGAAGCCACCCACCCCTCCCTTC
ATCCCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTGGCTAGAGGCTCTG
TGCGTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGGATAAGCTGGTGCG
GGTAGTGGAGGAGGAGCAGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAAA
GAGGGGATGCACTTGACGCGCTGATGATCCACCACACTGTCGATCGTGTT
CTCTACGTCCCCTCCCCCCACGCACCCAGCGGCCTCAAAGCCTTTCCTTC
CTCCGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCACTCACTCCCTCCC
CCTCATCATCTACCCCGGGTCGTTCAACCCTCTCCACGACGGCCACCTCC
AACTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCATCCATCCCTCCATC
CCTCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCACCTGTAATGCCGA
TAAAGGTTTCATTGACCGAACTCTCCTCCTCCCACGCCTTTCCCAGTTCT
CCTCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTC
GTCCTGACCCGCGCCCCTCTCTTCGTAACGAAAGCCCGACTCTTTCCCAA
TTCTTACTTCCTCATCGGCGCGGACACGGCCCAACGGCTGCTGCAACCGA
AATATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAA
GGGAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTAGTATGCATGGTTG
TAGGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGAGGGTTCATGACGC
TGGATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCTCCCTCGGTCGATT
CTGGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTCGCGTCGACATGAG
CTCGACGGAAATCCGCGCACAGATGGCAGTGAAGGGGTGAAGCAGGGAGG
GAGGAAGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGTTAGCGTTCAAAGA
GAAATGCAGGGACGCCTGTCTTGGCCCCGGAGCAGCGCGTTTTACTTTCA
CCCTTCATGACAACAAGGAGAAAGGAGAGGTGAAGAAGGAGGAAGATAGC
CGCCGCCACACAGAAAGAAACAAGACGCCATCATAGGCAAATGACATTAC
TGTCTGTGTTGAGTCTTTTCCAGTCTTTTCTACTTTATTTTCCTTCAGGG
TACTAATATAATTCTTCCTCC
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Coding sequence (CDS) from alignment at chr4:1277149..1279769+

>NO04G04690.1 ID=NO04G04690.1|Name=NO04G04690.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr4:1277149..1279769+ (Nannochloropsis oceanica)
ATGATTAGGAGCACTCGGCGTGGCCTTGGCATTAACCACCACCCACCGTT
CATCCTTATCGCCCTCCGCTGTATTACTTGGTCCTTGGGCGGTGGATACT
TGCCCTTAGTCTCAGCACTAGTTCCTCTCGCCAGCTCAAGCGCCACCACC
AGCAGCACCATCAGCATCAGTCCCCGGGGGTCTGCCTCTCCATCATCTTC
AGTGGGGGAAGCAACGCCTTTTTGCTCATTCATACCATCAGCGTGGGCAC
CTTCGCCGGTCGTTTCGTGTATTTCATCCTCTCGGTCTGTCACTTCCTCT
TTCTCCTCTTTCTCCTCTTCTCCTCTCGCACGCTCACGAAGGGGATCTTC
GGCCTCTCTTTTCCCCTCCACTTTCACCAGCAGTGGTAGCTGCAGTGGCA
ACAGCGTACAGACCTTTTCCTCCCCCTCTTCAACCATGACCGAATCCCCC
ATCCCCACCGAAGTCCAATCTGCCCTCCACGCCCTCTACAACATGCCGCC
GTCCTCCTCCTCCCCTCCCTCCTCCTCCTCCTCCCACCTCCACATCTGCA
TCTGCACCAGCGGCGCCGGTGGTTCACTCAATGCATGGATGCTCGGTACG
CCTGGAGCGAGCAACGTGTTAATTGAACTATCTTCCCCCTACGCCAAGGG
CTCTATCAAGGCCTACCTCAAAGGTGAAGGAGGGCGGAAGGGAGGAAGCG
GGGAGCAACTACCCTCCAACGGCTCCTACTGCTCTGCATCGACAGCACGA
GAGCTCGCCCAGGCGGCGTACACGCGCGCTGTGACATCTGCAGTGGCGGG
TGGGGAGGAGGAGGGCGGGAGGGAGGGAGGGATAGAGGTGTTGCGGAAGG
GGAAGTTCGTCGGCGTAGCTTGCACGGCGGCCGTGGTGTCAAGGGAAACC
AAAAGGGGGGCACACAGGGCCCATGTAGCAACTCACACACTGGACGAAGA
TGGAAAAATCGTCTCAAAGTCCTACTATTTGGCACTTACCAAAGGGGCTC
GGACACGGACAGAGGAAGATGCTGAGGTCAGTAAGGGGACTCTGGCTGCG
CTATTGGAAGCCACCCACCCCTCCCTTCATCCCTCGTCCTCGTCTTCGTC
CTCGTCCTCGTCGTGGCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAGGCG
GGGCGGGCGGGGAGGATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAGAAG
GAGGGAGGGAAGGAGGGAGGGAAGGAAAGAGGGGATGCACTTGACGCGCT
GATGATCCACCACACTGTCGATCGTGTTCTCTACGTCCCCTCCCCCCACG
CACCCAGCGGCCTCAAAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCGCCC
TCCCTCCCTCCCTCACTCACTCCCTCCCCCTCATCATCTACCCCGGGTCG
TTCAACCCTCTCCACGACGGCCACCTCCAACTCGCTCATGCCGCCCAGAC
CCTCCTTGGCTCCATCCATCCCTCCATCCCTCCCTCCCTCCCCCCCGTCC
TCTTCGAGATATCCACCTGTAATGCCGATAAAGGTTTCATTGACCGAACT
CTCCTCCTCCCACGCCTTTCCCAGTTCTCCTCTCCCTCCTCTTTCTCCCT
CCCTCCCTCCCTCCCTCTCCCCCTTCTCGTCCTGA
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Synonyms
Publications