NO04G04650, NO04G04650 (gene) Nannochloropsis oceanica

Overview
NameNO04G04650
Unique NameNO04G04650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr4:1266192..1266845 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding enhancer protein-related
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1266192..1266845 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: XP_005854143.1 (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526] >EKU22220.1 hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.2 bits (326), Expect = 3.500e-27
Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 0 
Query:    1 MATKAQQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQA-REWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLL 97
            MATKAQQKE+LEKVTDYVEE VLDADRMAKAMSSLESD SGARA AAK A  EWAAVKV P D+  IV ELEVT   AEQ LK  GG+VV+AL+RLL
Sbjct:  147 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLASSEWAAVKVNPNDVKFIVGELEVTSEAAEQALKESGGDVVKALQRLL 243
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: EWM28853.1 (hypothetical protein Naga_100133g15 [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15
Identity = 71/145 (48.97%), Postives = 78/145 (53.79%), Query Frame = 0 
Query:    1 MATKAQQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAR-----------------------EWAA------------------VKVKP----EDISLIV----SELEVTEAIAEQTLKREGGNVVEALRRLL 97
            MATKAQQKE+LEKVTDYVEE VLDADRMAKAMSSLESD SGARA AAK AR                        W+                   +K  P      IS  +    SELEVT   AEQ LK  GG+VV+AL+RLL
Sbjct:    1 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLARTAYDESAYYLSFLKETAIHTIDLSWSRQLFIHQPRLDSGTLHILYLKSFPIKRGSQISSFLKRFSSELEVTSEAAEQALKESGGDVVKALQRLL 145
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BLAST of NO04G04650 vs. NCBI_GenBank
Match: XP_011420739.1 (PREDICTED: huntingtin-interacting protein K [Crassostrea gigas] >EKC17955.1 Huntingtin-interacting protein K [Crassostrea gigas] >EKC39947.1 Huntingtin-interacting protein K [Crassostrea gigas])

HSP 1 Score: 73.2 bits (178), Expect = 5.100e-10
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:   11 LEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEAL 93
            LEKVTDYVEE+ + A  +  AM ++    +  RA+  ++ RE A VK+  ED+ LIV+E+E+T  IAE+TL+   G+VVEAL
Sbjct:   30 LEKVTDYVEEKEISAQSIGDAMKAMSDRKTKERAKKQERERELAKVKINKEDVDLIVAEMEITRQIAERTLREHNGDVVEAL 111
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: EKC31267.1 (Huntingtin-interacting protein K [Crassostrea gigas])

HSP 1 Score: 73.2 bits (178), Expect = 5.100e-10
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:   11 LEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEAL 93
            LEKVTDYVEE+ + A  +  AM ++    +  RA+  ++ RE A VK+  ED+ LIV+E+E+T  IAE+TL+   G+VVEAL
Sbjct:   43 LEKVTDYVEEKEISAQSIGDAMKAMSDRKTKERAKKQERERELAKVKINKEDVDLIVAEMEITRQIAERTLREHNGDVVEAL 124
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: NP_001236191.1 (uncharacterized protein LOC100527445 [Glycine max] >ACU16536.1 unknown [Glycine max])

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-9
Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:    6 QQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH 98
            QQ ++L+K+TD+VE+R LD+ R+ +AM+S+ +     R     + +E AAVK+   D+ +I +ELE+ + +AE+TL+   G+ V A+R LLH
Sbjct:   19 QQSKALDKLTDHVEDRQLDSTRVQEAMASIAASAEAGRNAMRIREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH 110
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: KHN14692.1 (Huntingtin-interacting protein K [Glycine soja] >KRH11935.1 hypothetical protein GLYMA_15G139900 [Glycine max])

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-9
Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:    6 QQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH 98
            QQ ++L+K+TD+VE+R LD+ R+ +AM+S+ +     R     + +E AAVK+   D+ +I +ELE+ + +AE+TL+   G+ V A+R LLH
Sbjct:   19 QQSKALDKLTDHVEDRQLDSTRVQEAMASIAASAEADRNAMRIREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH 110
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: XP_022315776.1 (LOW QUALITY PROTEIN: huntingtin-interacting protein K-like [Crassostrea virginica])

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-9
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:   11 LEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEAL 93
            LEKVTDYVEE+ + A  +  AM ++    +  RA+  ++ RE A VK+  ED+ LIV+E+E+T  IAE+T +   G+VVEAL
Sbjct:   31 LEKVTDYVEEKEISAQSIGDAMKAMSDRKTKERAKKQERXRELAKVKINKEDVDLIVAEMEITRQIAERTXREHNGDVVEAL 112
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: XP_002466157.1 (huntingtin-interacting protein K [Sorghum bicolor] >EER93155.1 hypothetical protein SORBI_3001G025600 [Sorghum bicolor])

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-9
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:    6 QQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH 98
            QQ ++L+K+TD+VE+R LD+ R+  AM++L S           + +E AAVK+ P D+ +I +ELE+ + IAE+TL+   G+ V A+R LLH
Sbjct:   33 QQSKALDKLTDHVEDRQLDSSRVQSAMAALASSKEADWNAMRLREKELAAVKINPTDVEIIANELELDKKIAERTLREHKGDAVAAVRFLLH 124
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: XP_004295072.1 (PREDICTED: huntingtin-interacting protein K [Fragaria vesca subsp. vesca])

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-9
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:    6 QQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH 98
            QQ ++ +K+TD VE+R LD+ R+ +AM+S+ + +        K+ +E A VK+ P D+ +I +ELE+ + +AE+TL+   G+ V A+R LLH
Sbjct:   20 QQSKAFDKLTDRVEDRQLDSTRVQEAMASIAATSEADLEAMRKREKELATVKINPRDVEIIANELELDKLVAERTLREHKGDAVAAIRHLLH 111
[Close]
BLAST of NO04G04650 vs. NCBI_GenBank
Match: PAN44177.1 (hypothetical protein PAHAL_I01326 [Panicum hallii] >PUZ36237.1 hypothetical protein GQ55_9G021800 [Panicum hallii var. hallii])

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-9
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:    6 QQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQAREWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH 98
            QQ ++L+K+TD+VE+R LD+ R+  AM++L S           + +E AAVK+ P D+ +I +ELE+ + IAE+TL+   G+ V A+R LLH
Sbjct:   31 QQSKALDKLTDHVEDRQLDSSRVQSAMAALASSKEADWNAMRLREKELAAVKINPTDVEIIANELELDKKIAERTLREHKGDAVAAVRFLLH 122
The following BLAST results are available for this feature:
BLAST of NO04G04650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854143.13.500e-2777.32hypothetical protein NGA_0204200, partial [Nannoch... [more]
EWM28853.16.900e-1548.97hypothetical protein Naga_100133g15 [Nannochlorops... [more]
XP_011420739.15.100e-1047.56PREDICTED: huntingtin-interacting protein K [Crass... [more]
EKC31267.15.100e-1047.56Huntingtin-interacting protein K [Crassostrea giga... [more]
NP_001236191.11.100e-940.22uncharacterized protein LOC100527445 [Glycine max]... [more]
KHN14692.12.000e-940.22Huntingtin-interacting protein K [Glycine soja] >K... [more]
XP_022315776.12.000e-946.34LOW QUALITY PROTEIN: huntingtin-interacting protei... [more]
XP_002466157.12.600e-942.39huntingtin-interacting protein K [Sorghum bicolor]... [more]
XP_004295072.12.600e-939.13PREDICTED: huntingtin-interacting protein K [Fraga... [more]
PAN44177.12.600e-942.39hypothetical protein PAHAL_I01326 [Panicum hallii]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009321NSK009321Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04650.1NO04G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668916gene_2253Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g15gene1752Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04650.1NO04G04650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04650 ID=NO04G04650|Name=NO04G04650|organism=Nannochloropsis oceanica|type=gene|length=654bp
ATGGCGACCAAGGCACAACAAAAAGAGAGCCTGGAGAAGGTCACGGACTA
CGTGGAGGAGCGAGTGCTAGACGCAGACCGCATGGCCAAAGCCATGTCCT
CCCTCGAAAGTGACACGAGCGGTGCGCGGGCCGAGGCTGCCAAGCAAGCA
CGgtaagtgcgtgtgcgatcgtgtttgtgtaggtattggtgtgtccatct
taatttttcttggccgctgtcctttgtccgtgcaaggtcccccccaatcc
gtcggtatgcggcatgcatgtctctacccttctcccccaaccaggcaagc
gagaccatgtgctttttaccccaccgaccggcccctgtctccttcctgac
cacccttgcttttcaaacagcatatatacatatgtatctactcggcatgc
actaccgacctgctctattctttgtcctcccttacgctcctatcgttgtc
ctctgctacctcccgaaactcatccttcctcccctcctccctcctcccct
ccctccttgcagAGAATGGGCCGCCGTCAAAGTCAAGCCCGAAGACATCT
CATTAATTGTGAGTGAATTGGAAGTGACGGAGGCAATAGCCGAGCAGACA
CTCAAGAGGGAAGGGGGGAATGTAGTCGAGGCCTTGCGGCGGCTCTTGCA
TTAA
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protein sequence of NO04G04650.1

>NO04G04650.1-protein ID=NO04G04650.1-protein|Name=NO04G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MATKAQQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQA
REWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH*
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Synonyms
Publications