NO04G04650.1, NO04G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04650.1
Unique NameNO04G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length294
Alignment locationchr4:1266192..1266845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1266192..1266845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04650.1 vs.
Match: XP_005854143.1 (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526]; EKU22220.1 hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.2 bits (326), Expect = 3.500e-27
Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 0 
Query:    1 MATKAQQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQA-REWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLL 97
            MATKAQQKE+LEKVTDYVEE VLDADRMAKAMSSLESD SGARA AAK A  EWAAVKV P D+  IV ELEVT   AEQ LK  GG+VV+AL+RLL
Sbjct:  147 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLASSEWAAVKVNPNDVKFIVGELEVTSEAAEQALKESGGDVVKALQRLL 243
The following BLAST results are available for this feature:
BLAST of NO04G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854143.13.500e-2777.32hypothetical protein NGA_0204200, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04650NO04G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04650.1NO04G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04650.1.cds1NO04G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04650.1.cds2NO04G04650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04650.1 ID=NO04G04650.1|Name=NO04G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=294bp
ATGGCGACCAAGGCACAACAAAAAGAGAGCCTGGAGAAGGTCACGGACTA
CGTGGAGGAGCGAGTGCTAGACGCAGACCGCATGGCCAAAGCCATGTCCT
CCCTCGAAAGTGACACGAGCGGTGCGCGGGCCGAGGCTGCCAAGCAAGCA
CGAGAATGGGCCGCCGTCAAAGTCAAGCCCGAAGACATCTCATTAATTGT
GAGTGAATTGGAAGTGACGGAGGCAATAGCCGAGCAGACACTCAAGAGGG
AAGGGGGGAATGTAGTCGAGGCCTTGCGGCGGCTCTTGCATTAA
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protein sequence of NO04G04650.1

>NO04G04650.1-protein ID=NO04G04650.1-protein|Name=NO04G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MATKAQQKESLEKVTDYVEERVLDADRMAKAMSSLESDTSGARAEAAKQA
REWAAVKVKPEDISLIVSELEVTEAIAEQTLKREGGNVVEALRRLLH*
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mRNA from alignment at chr4:1266192..1266845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04650.1 ID=NO04G04650.1|Name=NO04G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at chr4:1266192..1266845+ (Nannochloropsis oceanica)
ATGGCGACCAAGGCACAACAAAAAGAGAGCCTGGAGAAGGTCACGGACTA
CGTGGAGGAGCGAGTGCTAGACGCAGACCGCATGGCCAAAGCCATGTCCT
CCCTCGAAAGTGACACGAGCGGTGCGCGGGCCGAGGCTGCCAAGCAAGCA
CGGTAAGTGCGTGTGCGATCGTGTTTGTGTAGGTATTGGTGTGTCCATCT
TAATTTTTCTTGGCCGCTGTCCTTTGTCCGTGCAAGGTCCCCCCCAATCC
GTCGGTATGCGGCATGCATGTCTCTACCCTTCTCCCCCAACCAGGCAAGC
GAGACCATGTGCTTTTTACCCCACCGACCGGCCCCTGTCTCCTTCCTGAC
CACCCTTGCTTTTCAAACAGCATATATACATATGTATCTACTCGGCATGC
ACTACCGACCTGCTCTATTCTTTGTCCTCCCTTACGCTCCTATCGTTGTC
CTCTGCTACCTCCCGAAACTCATCCTTCCTCCCCTCCTCCCTCCTCCCCT
CCCTCCTTGCAGAGAATGGGCCGCCGTCAAAGTCAAGCCCGAAGACATCT
CATTAATTGTGAGTGAATTGGAAGTGACGGAGGCAATAGCCGAGCAGACA
CTCAAGAGGGAAGGGGGGAATGTAGTCGAGGCCTTGCGGCGGCTCTTGCA
TTAA
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Coding sequence (CDS) from alignment at chr4:1266192..1266845+

>NO04G04650.1 ID=NO04G04650.1|Name=NO04G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at chr4:1266192..1266845+ (Nannochloropsis oceanica)
ATGGCGACCAAGGCACAACAAAAAGAGAGCCTGGAGAAGGTCACGGACTA
CGTGGAGGAGCGAGTGCTAGACGCAGACCGCATGGCCAAAGCCATGTCCT
CCCTCGAAAGTGACACGAGCGGTGCGCGGGCCGAGGCTGCCAAGCAAGCA
CGAGAATGGGCCGCCGTCAAAGTCAAGCCCGAAGACATCTCATTAATTGT
GAGTGAATTGGAAGTGACGGAGGCAATAGCCGAGCAGACACTCAAGAGGG
AAGGGGGGAATGTAGTCGAGGCCTTGCGGCGGCTCTTGCATTAA
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Synonyms
Publications