NO04G04300, NO04G04300 (gene) Nannochloropsis oceanica

Overview
NameNO04G04300
Unique NameNO04G04300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2302
Alignment locationchr4:1161988..1164289 -

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Properties
Property NameValue
DescriptionRiboflavin biosynthesis protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1161988..1164289 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Homology
BLAST of NO04G04300 vs. NCBI_GenBank
Match: EWM28807.1 (riboflavin biosynthesis protein [Nannochloropsis gaditana])

HSP 1 Score: 628.2 bits (1619), Expect = 1.600e-176
Identity = 304/376 (80.85%), Postives = 335/376 (89.10%), Query Frame = 0
Query:    5 EVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEATL 381
            EV+E    E   PSY+E+DRKHMRRAL LA+ ALGKTRPNPVVGCVI+DQ G +VGEGFHPKAG+PHAEVFAL+EAG++ARGGT YVTLEPCNH GKTPPCVDALL AG+KKVVAGMVDPFPLVGGKGLARL + GVEVVVGCE+ KCQ LNRPFVHRV HGTPLGFLPLTY    FVRP+P TVQLGDGGKAL+MIDA+VVDFNVKGEGLQTV  L+ AGLLQDEVVR+VLANDL+ LP EWAK+KK +VRK+VLT++I  Q AAV  LEGRGVEV+ MPTDPLAVGKY+H L LLSALWLLCPEGAK AVKAGVVQDLWIH TLQEAD+LDGVDDPDFLGRQFGRPMK++VMSCDA+GTKACLLSLT+DD ATL
Sbjct:   69 EVDEESMAEIQEPSYSESDRKHMRRALHLAAQALGKTRPNPVVGCVILDQEGVVVGEGFHPKAGQPHAEVFALKEAGDRARGGTVYVTLEPCNHHGKTPPCVDALLEAGIKKVVAGMVDPFPLVGGKGLARLADNGVEVVVGCEEGKCQALNRPFVHRVQHGTPLGFLPLTYSRQDFVRPAPATVQLGDGGKALEMIDAIVVDFNVKGEGLQTVAALQTAGLLQDEVVRIVLANDLSALPVEWAKHKKASVRKVVLTTSIAGQEAAVEVLEGRGVEVIAMPTDPLAVGKYMHGLGLLSALWLLCPEGAKRAVKAGVVQDLWIHATLQEADDLDGVDDPDFLGRQFGRPMKMSVMSCDAVGTKACLLSLTIDDTATL 444          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_012594570.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Cyanothece sp. PCC 8801] >ACK65296.1 riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801])

HSP 1 Score: 242.7 bits (618), Expect = 1.900e-60
Identity = 144/313 (46.01%), Postives = 191/313 (61.02%), Query Frame = 0
Query:   23 DRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFL--PLTYRGHSFVRPSPDTVQLGDGGKAL-----QMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSE---WAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPT-DPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            D++ M+R L+LA  ALG+T PNP+VG VI+ QNG++VGEGFHPKAGEPHAE+FALR+A E+A+G T YV+LEPCNH G+TPPC DAL+AAGV KVV GMVDP PLV GKG+ +L+E G+EVVVG E+  C++LN  F+HR++H  PLG L   +T  G             G   + L        DAV+V  N   +    +TT E AG+     +RVV++  L  LPSE   W  +   T+     T N + Q      L  RGVEV+E+ +  P  V + L++  L S LW      A  A+  GV+Q +
Sbjct:    7 DQQMMQRCLQLARQALGQTSPNPLVGSVIV-QNGEIVGEGFHPKAGEPHAEIFALRQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTASRQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTL-DLPSEANLWQTDIASTLVITERTRNSKLQ----AQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLAAQAIADGVIQKI 310          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_015783546.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Cyanothece sp. PCC 8802] >ACV00183.1 riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802])

HSP 1 Score: 241.9 bits (616), Expect = 3.200e-60
Identity = 144/315 (45.71%), Postives = 193/315 (61.27%), Query Frame = 0
Query:   23 DRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFL--PLTYRGHSFVRPSPDTVQLGDGGKAL-----QMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLT-----SNIEAQRAAVVGLEGRGVEVLEMPT-DPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            D++ M+R L+LA  ALG+T PNP+VG VI+ QNG++VGEGFHPKAGEPHAE+FALR+A E+A+G T YV+LEPCNH G+TPPC DAL+AAGV KVV GMVDP PLV GKG+ +L+E G+EVVVG E+  C++LN  F+HR++H  PLG L   +T  G             G   + L        DAV+V  N   +    +TT E AG+     +RVV++  L  LPSE    +      +V+T     S ++AQ      L  RGVEV+E+ +  P  V + L++  L S LW      A  A+  GV+Q +
Sbjct:    7 DQQMMQRCLQLARQALGQTSPNPLVGSVIV-QNGEIVGEGFHPKAGEPHAEIFALRQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTASRQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTL-DLPSEANLWQTDIAPTLVITERGRNSKLQAQ------LRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLAAQAIADGVIQKI 310          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_046280111.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Limnoraphis robusta] >KKD36621.1 5-amino-6-(5-phosphoribosylamino)uracil reductase [Limnoraphis robusta CS-951])

HSP 1 Score: 235.7 bits (600), Expect = 2.300e-58
Identity = 144/324 (44.44%), Postives = 187/324 (57.72%), Query Frame = 0
Query:   15 DPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEM-PTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHV 329
            DP    E DR+ M R L LA  ALGKT PNP+VGCVI+ Q+  +VGEGFHP AG+PHAEVFALR+AGE+A G T YV LEPCNH G+TPPC +AL+ A V KVV GM+DP PLV G+G+ RL++ G+EV+VG E++ CQ LN  FVHR++H  PLG L           T  GHS    SP   Q     +     DAV+V  N        +TT   AG  +   +RVV++  L  LP E           +VLT+  +A       L+ +GVEV+ + P  P  V  +L+D   L+ LW      A  A+  GV+Q +W  +
Sbjct:    6 DPERPAEFDRQMMLRCLELARRALGKTAPNPLVGCVIV-QDNMIVGEGFHPGAGQPHAEVFALRDAGERAVGATVYVNLEPCNHYGRTPPCTEALIQAKVAKVVVGMIDPNPLVAGQGIERLKQAGIEVIVGVEQDACQLLNEGFVHRILHHQPLGILKYAMTLDGKIATTTGHSAWITSPTARQ--QVHQLRVACDAVIVGGNTVRRDNPHLTT-HHAG--EPNPLRVVMSRKL-DLPLEANLWDITAANTLVLTTK-DADPDCQEQLQKKGVEVVALSPLTPATVMNHLYDRQFLNVLWECGGTLAAQAIAEGVIQKIWAFI 321          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_067774511.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Nostoc sp. NIES-3756] >BAT56277.1 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nostoc sp. NIES-3756])

HSP 1 Score: 235.0 bits (598), Expect = 4.000e-58
Identity = 145/334 (43.41%), Postives = 194/334 (58.08%), Query Frame = 0
Query:    4 PEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSE---WAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMP-TDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            P V + +G++ D         + M+R L LA  ALG+T PNP+VG V++ Q+G++VGEGFHP+AGEPHAEVFALR AGE+ARG T YV LEPCNH G+TPPC + L+AAGV KVV GMVDP PLV G G+ARL   GVEV+VG E   CQ+LN  FVHR++H  PLG L           T  GHS    +P     G+  +     DAV+V  N        +T+ ++        +RVV++  L  LP++   W  N+  T+    L +N + Q+     L+ +GVEVLE+P   P  V  +L+D    S LW      A +A+  G VQ +
Sbjct:   27 PSVPQGVGSDFDV--------RMMQRCLELARRALGRTSPNPLVGAVVV-QDGEIVGEGFHPRAGEPHAEVFALRAAGERARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVAGGGIARLRAAGVEVLVGVETAACQQLNEGFVHRILHKRPLGILKYAMTLDGKIATASGHSAWVTNPSA--RGEVHQLRAACDAVIVGGNTVRRDNPYLTSHQEG---VHNPLRVVMSRQL-DLPTDAHLWDTNQAPTLVLTQLGANPDFQKL----LQQKGVEVLELPLLTPEIVMSHLYDRGFCSVLWECGGTLAASAIAGGAVQKI 341          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_106147431.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [filamentous cyanobacterium Phorm 46] >PSB36829.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [filamentous cyanobacterium Phorm 46])

HSP 1 Score: 234.6 bits (597), Expect = 5.200e-58
Identity = 150/331 (45.32%), Postives = 185/331 (55.89%), Query Frame = 0
Query:   13 ETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSF------VRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTS---NIEAQRAAVVGLEGRGVEVLEM-PTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            + D     E DR  MRR + LA  ALGKT PNP+VGCVI+ ++GK+VGEGFHP AG+PHAEVFALREAGE A G TAYV++EPCNH G+TPPC +AL+ A V KVVAGMVDP PLV G GLARL E G+EVV G E E CQ+LN  FVHR++H  P G L           T  GHS        R     V++G         DAV+V  N        +T+ +  G      +RVV++  L    S W   +  T   +VLT    N E Q   +     +GVEV+E+ P  P     YL+D   LS LW      A  A+  G VQ +
Sbjct:   24 QLDNSEIQEFDRAMMRRCIELARRALGKTAPNPLVGCVIV-RDGKIVGEGFHPGAGQPHAEVFALREAGELAEGATAYVSMEPCNHYGRTPPCSEALIKAKVAKVVAGMVDPNPLVAGTGLARLREAGIEVVAGVEGEACQKLNEAFVHRILHRRPFGILKYAMTLDGKIATSSGHSAWVTGQEARSEVHRVRVG--------CDAVIVGGNTVRLDNPLLTSHKPDG---HNPLRVVMSRTLDLPKSAWLW-ETSTAATLVLTEPGVNPEFQEFLI----AKGVEVVELSPLTPTNAMAYLYDRSFLSVLWECGGTLAAKAIAEGAVQKI 337          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_106333634.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [filamentous cyanobacterium Phorm 6] >PSB46013.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [filamentous cyanobacterium Phorm 6])

HSP 1 Score: 234.6 bits (597), Expect = 5.200e-58
Identity = 150/331 (45.32%), Postives = 185/331 (55.89%), Query Frame = 0
Query:   13 ETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSF------VRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTS---NIEAQRAAVVGLEGRGVEVLEM-PTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            + D     E DR  MRR + LA  ALGKT PNP+VGCVI+ ++GK+VGEGFHP AG+PHAEVFALREAGE A G TAYV++EPCNH G+TPPC +AL+ A V KVVAGMVDP PLV G GLARL E G+EVV G E E CQ+LN  FVHR++H  P G L           T  GHS        R     V++G         DAV+V  N        +T+ +  G      +RVV++  L    S W   +  T   +VLT    N E Q   +     +GVEV+E+ P  P     YL+D   LS LW      A  A+  G VQ +
Sbjct:   24 QLDNSEIQEFDRAMMRRCIELARRALGKTAPNPLVGCVIV-RDGKIVGEGFHPGAGQPHAEVFALREAGELAEGATAYVSMEPCNHYGRTPPCSEALIKAKVAKVVAGMVDPNPLVAGTGLARLREAGIEVVAGVEGEACQKLNEAFVHRILHRRPFGILKYAMTLDGKIATSSGHSAWVTGQEARSEVHRVRVG--------CDAVIVGGNTVRLDNPLLTSHKPDG---HNPLRVVMSRTLDLPKSAWLW-ETSTAATLVLTEPGVNPEFQEFLI----AKGVEVVELSPLTPTNAMAYLYDRSFLSVLWECGGTLAAKAIAEGAVQKI 337          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: ERT05081.1 (riboflavin biosynthesis protein RibD [Lyngbya aestuarii BL J])

HSP 1 Score: 231.5 bits (589), Expect = 4.400e-57
Identity = 136/322 (42.24%), Postives = 184/322 (57.14%), Query Frame = 0
Query:   17 PSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEM-PTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHV 329
            P   E DR+ M R L LA  ALGKT PNP+VG V++  +  +VGEGFHP AG+PHAEVFALR+AGE+A+G T YV LEPCNH G+TPPC +AL+ A V KVV GM+DP PLV G+G+ RL++ G+EV+VG E+E CQ+LN  F+HR++H  PLG             T  GHS    SP   Q     +     DAV+V  N        +TT  +    +   +RVV++  L  LP E      K    +V T+  +A       L+ +GVEV+ + P  P  V  +L++   LS LW      A +A+  G +Q +W  +
Sbjct:    5 PIPPEFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDDYNIVGEGFHPGAGQPHAEVFALRDAGEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAGIEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQ--QVHQLRVACDAVIVGGNTVRRDNPHLTTHNQG---KPNPLRVVMSRKL-DLPLEANLWDIKEANTLVFTTK-DADPDCQEQLQKKGVEVVVLSPLTPKTVMTHLYERQFLSVLWECGGTLAASAIAEGAIQKIWAFI 319          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_040484501.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Lyngbya aestuarii])

HSP 1 Score: 231.5 bits (589), Expect = 4.400e-57
Identity = 136/322 (42.24%), Postives = 184/322 (57.14%), Query Frame = 0
Query:   17 PSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEM-PTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHV 329
            P   E DR+ M R L LA  ALGKT PNP+VG V++  +  +VGEGFHP AG+PHAEVFALR+AGE+A+G T YV LEPCNH G+TPPC +AL+ A V KVV GM+DP PLV G+G+ RL++ G+EV+VG E+E CQ+LN  F+HR++H  PLG             T  GHS    SP   Q     +     DAV+V  N        +TT  +    +   +RVV++  L  LP E      K    +V T+  +A       L+ +GVEV+ + P  P  V  +L++   LS LW      A +A+  G +Q +W  +
Sbjct:    8 PIPPEFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDDYNIVGEGFHPGAGQPHAEVFALRDAGEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAGIEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQ--QVHQLRVACDAVIVGGNTVRRDNPHLTTHNQG---KPNPLRVVMSRKL-DLPLEANLWDIKEANTLVFTTK-DADPDCQEQLQKKGVEVVVLSPLTPKTVMTHLYERQFLSVLWECGGTLAASAIAEGAIQKIWAFI 322          
BLAST of NO04G04300 vs. NCBI_GenBank
Match: WP_096678311.1 (bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Nostoc sp. NIES-2111] >BAY35954.1 riboflavin biosynthesis protein RibD [Nostoc sp. NIES-2111])

HSP 1 Score: 229.9 bits (585), Expect = 1.300e-56
Identity = 142/334 (42.51%), Postives = 193/334 (57.78%), Query Frame = 0
Query:    4 PEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLP---------LTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSE---WAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMP-TDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDL 325
            P V + +G++ D         + M+R L LA  ALG+T PNP+VG V++ ++G++VGEGFHP+AGEPHAEVFALR AGE+ARG T YV LEPCNH G+TPPC + L+AAGV KVV GMVDP PLV G G+A+L   GVEV+VG E   CQ+LN  FVHR++H  PLG L           T  GHS    +P     G+  +     DAV+V  N        +T+ ++        +RVV++  L  LP++   W   +  T+    L +N + Q+     L+ +GVEVLE+P   P  V  +L+D    S LW      A +A+  G VQ +
Sbjct:   27 PSVPQGVGSDFDV--------RMMQRCLELARRALGRTSPNPLVGAVVV-KDGEIVGEGFHPRAGEPHAEVFALRAAGERARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVAGGGIAKLRAAGVEVLVGVEPAACQQLNEGFVHRILHKRPLGILKYAMTLDGKIATTSGHSAWVTNPSA--RGEVHQLRAACDAVIVGGNTVRRDNPYLTSHQEG---VHNPLRVVMSRQL-DLPTDAHLWDTTQAPTLVLTQLGANPDFQKL----LQQKGVEVLELPLLTPEIVMSHLYDRGFCSVLWECGGTLAASAIAGGAVQKI 341          
The following BLAST results are available for this feature:
BLAST of NO04G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200Expect = 1.60e-176 / Id = 80.85Expect = 1.90e-60 / Id = 46.01Expect = 3.20e-60 / Id = 45.71Expect = 2.30e-58 / Id = 44.44Expect = 4.00e-58 / Id = 43.41Expect = 5.20e-58 / Id = 45.32Expect = 5.20e-58 / Id = 45.32Expect = 4.40e-57 / Id = 42.24Expect = 4.40e-57 / Id = 42.24Expect = 1.30e-56 / Id = 42.51SequenceEWM28807.1WP_012594570.1WP_015783546.1WP_046280111.1WP_067774511.1WP_106147431.1WP_106333634.1ERT05081.1WP_040484501.1WP_096678311.1
Match NameE-valueIdentityDescription
EWM28807.11.600e-17680.85riboflavin biosynthesis protein [Nannochloropsis g... [more]
WP_012594570.11.900e-6046.01bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
WP_015783546.13.200e-6045.71bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
WP_046280111.12.300e-5844.44bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
WP_067774511.14.000e-5843.41bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
WP_106147431.15.200e-5845.32bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
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WP_040484501.14.400e-5742.24bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
WP_096678311.11.300e-5642.51bifunctional diaminohydroxyphosphoribosylaminopyri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009357NSK009357Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04300.2NO04G04300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04300.1NO04G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579505gene_2217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04300.2NO04G04300.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04300.1NO04G04300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04300 ID=NO04G04300|Name=NO04G04300|organism=Nannochloropsis oceanica|type=gene|length=2302bp
GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA
CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG
GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC
ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG
AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC
TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA
TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC
AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA
GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT
CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT
CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC
TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA
CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG
GCTCATCCACGAGCCCATTAAGTGCAACGAgtaagtatgaagtatatgca
agagcagcgacgccggatacatcccatatgtatatccccccctttttttt
ctcttccttttttttcttccttttttttctcccctctttccttcccttct
ccccccggaatgattatccacaaacataagggatttacccgagccctcta
tttctcattgaggatgcgttgacgagcaagtgtttccaaatcagactgac
cggtccaattcccctcccccccttccccccttttccctcacatataccgc
ttctagaatcccagtaattcccctttctacctcacatcacaccactcaaa
cagCCTTCATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACT
GATCCCCCCTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCT
CCGACTTGCCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCG
GATGCGTCATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCAT
CCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGG
TGAAAAAGCAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATC
ACACGGGGAAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTC
AAAAAAGTAGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAA
GGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTG
AGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATG
CATGGGACACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTT
CGTCAGACCCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGC
TACAAATGATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGG
TTGCAGACTGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGT
CGTGAGGGTGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGG
CCAAAAACAAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATC
GAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGT
GTTGGAAATGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACT
TAGATTTGTTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCA
GCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCA
GGAGGCGGACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGC
AGTTTGGGAGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGG
ACAAAGGCGTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTG
AGGGCGGGAGTGTGAGAAGGCATGTGCGTGAGATAATTGTGTGTATTTAC
TTCGGCGTGAGACGTTCCTTTTTCCATCCCATTTTGTCGATAGTAGCTAG
TGGCAGCAATTTGTACCTAGCCACTTCCAAATTAATACTTACGTACGTGG
AA
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protein sequence of NO04G04300.2

>NO04G04300.2-protein ID=NO04G04300.2-protein|Name=NO04G04300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MMDPEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCV
IIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTG
KTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKE
KCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQM
IDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKN
KKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDL
LSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFG
RPMKVAVMSCDAIGTKACLLSLTVDDEATL*
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protein sequence of NO04G04300.1

>NO04G04300.1-protein ID=NO04G04300.1-protein|Name=NO04G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRPSFAFSGSPLLILLALVVTTTAFVLPTCPQQQRSTFAQHSHIYSTRAS
HSLCRGRPLGSSTSPLSATTFMMDPEVEEALGNETDPPSYTETDRKHMRR
ALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALRE
AGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVG
GKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGH
SFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQD
EVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGV
EVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVT
LQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEAT
L*
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Synonyms
Publications