Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:1161988..1164289 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04300.1 vs.
Match: EWM28807.1 (riboflavin biosynthesis protein [Nannochloropsis gaditana]) HSP 1 Score: 632.1 bits (1629), Expect = 1.300e-177 Identity = 322/443 (72.69%), Postives = 365/443 (82.39%), Query Frame = 0 Query: 11 PLLILLALVVTTTAFVLPTCPQQQRSTFAQHSH--IYSTRASHSLCRGRPLGSSTSPLSATTFMMDPEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEATL 452
P+ L+ L+ T+F+L + QR +++ R H L RP + L+A+TF M EV+E E PSY+E+DRKHMRRAL LA+ ALGKTRPNPVVGCVI+DQ G +VGEGFHPKAG+PHAEVFAL+EAG++ARGGT YVTLEPCNH GKTPPCVDALL AG+KKVVAGMVDPFPLVGGKGLARL + GVEVVVGCE+ KCQ LNRPFVHRV HGTPLGFLPLTY FVRP+P TVQLGDGGKAL+MIDA+VVDFNVKGEGLQTV L+ AGLLQDEVVR+VLANDL+ LP EWAK+KK +VRK+VLT++I Q AAV LEGRGVEV+ MPTDPLAVGKY+H L LLSALWLLCPEGAK AVKAGVVQDLWIH TLQEAD+LDGVDDPDFLGRQFGRPMK++VMSCDA+GTKACLLSLT+DD ATL
Sbjct: 11 PIFALVFLLPAATSFILSSHALCQRVGPIKYTERPFQGGRICHPL---RPFLA----LAASTFTM--EVDEESMAEIQEPSYSESDRKHMRRALHLAAQALGKTRPNPVVGCVILDQEGVVVGEGFHPKAGQPHAEVFALKEAGDRARGGTVYVTLEPCNHHGKTPPCVDALLEAGIKKVVAGMVDPFPLVGGKGLARLADNGVEVVVGCEEGKCQALNRPFVHRVQHGTPLGFLPLTYSRQDFVRPAPATVQLGDGGKALEMIDAIVVDFNVKGEGLQTVAALQTAGLLQDEVVRIVLANDLSALPVEWAKHKKASVRKVVLTTSIAGQEAAVEVLEGRGVEVIAMPTDPLAVGKYMHGLGLLSALWLLCPEGAKRAVKAGVVQDLWIHATLQEADDLDGVDDPDFLGRQFGRPMKMSVMSCDAVGTKACLLSLTIDDTATL 444
The following BLAST results are available for this feature:
BLAST of NO04G04300.1 vs.
Analysis Date: 2017-10-25 ( Homology annotation for N. oceanica IMET1)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EWM28807.1 | 1.300e-177 | 72.69 | riboflavin biosynthesis protein [Nannochloropsis g... | [more] |
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04300.1 ID=NO04G04300.1|Name=NO04G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp
GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA
CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG
GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC
ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG
AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC
TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA
TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC
AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA
GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT
CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT
CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC
TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA
CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG
GCTCATCCACGAGCCCATTAAGTGCAACGACCTTCATGATGGACCCTGAA
GTCGAAGAGGCCCTTGGAAATGAAACTGATCCCCCCTCTTATACCGAAAC
TGACCGTAAACACATGCGTCGCGCCCTCCGACTTGCCTCTTACGCGCTTG
GCAAGACCCGCCCCAACCCCGTGGTCGGATGCGTCATCATCGACCAAAAC
GGAAAATTAGTCGGAGAGGGCTTCCATCCTAAGGCCGGAGAGCCTCATGC
AGAAGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAGCAAGGGGAGGGACGG
CATACGTGACGCTGGAGCCATGTAATCACACGGGGAAGACTCCTCCCTGT
GTGGATGCCCTCCTTGCGGCAGGTGTCAAAAAAGTAGTAGCGGGCATGGT
CGACCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGGCAAGGCTGGAAGAGG
GGGGTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAGAAGTGTCAGGAGTTG
AACCGGCCGTTTGTTCACAGGGTAATGCATGGGACACCGTTGGGGTTTTT
GCCGTTGACCTACCGGGGGCATAGCTTCGTCAGACCCTCCCCTGATACGG
TCCAACTGGGGGATGGGGGAAAGGCGCTACAAATGATTGATGCTGTAGTG
GTGGACTTCAATGTGAAGGGTGAGGGGTTGCAGACTGTTACTACGCTTGA
AAAGGCGGGTCTGCTGCAGGATGAGGTCGTGAGGGTGGTGTTGGCAAATG
ACTTAGCCGGGCTACCGAGCGAGTGGGCCAAAAACAAAAAAAAGACGGTG
AGGAAAATTGTCCTGACTTCAAACATCGAGGCGCAACGAGCTGCTGTGGT
AGGGTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAATGCCGACAGATCCCT
TGGCTGTGGGCAAGTACTTGCATGACTTAGATTTGTTGTCGGCGTTATGG
CTGTTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAAGGCGGGAGTGGTGCA
GGATTTGTGGATCCATGTGACGTTGCAGGAGGCGGACGAGCTTGATGGGG
TGGATGATCCCGATTTCTTGGGGAGGCAGTTTGGGAGGCCGATGAAGGTA
GCGGTGATGAGTTGTGATGCGATTGGGACAAAGGCGTGCTTGTTGAGTTT
GACAGTGGATGATGAGGCGACGCTTTGAGGGCGGGAGTGTGAGAAGGCAT
GTGCGTGAGATAATTGTGTGTATTTACTTCGGCGTGAGACGTTCCTTTTT
CCATCCCATTTTGTCGATAGTAGCTAGTGGCAGCAATTTGTACCTAGCCA
CTTCCAAATTAATACTTACGTACGTGGAA back to topprotein sequence of NO04G04300.1 >NO04G04300.1-protein ID=NO04G04300.1-protein|Name=NO04G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRPSFAFSGSPLLILLALVVTTTAFVLPTCPQQQRSTFAQHSHIYSTRAS
HSLCRGRPLGSSTSPLSATTFMMDPEVEEALGNETDPPSYTETDRKHMRR
ALRLASYALGKTRPNPVVGCVIIDQNGKLVGEGFHPKAGEPHAEVFALRE
AGEKARGGTAYVTLEPCNHTGKTPPCVDALLAAGVKKVVAGMVDPFPLVG
GKGLARLEEGGVEVVVGCEKEKCQELNRPFVHRVMHGTPLGFLPLTYRGH
SFVRPSPDTVQLGDGGKALQMIDAVVVDFNVKGEGLQTVTTLEKAGLLQD
EVVRVVLANDLAGLPSEWAKNKKKTVRKIVLTSNIEAQRAAVVGLEGRGV
EVLEMPTDPLAVGKYLHDLDLLSALWLLCPEGAKAAVKAGVVQDLWIHVT
LQEADELDGVDDPDFLGRQFGRPMKVAVMSCDAIGTKACLLSLTVDDEAT
L* back to topmRNA from alignment at chr4:1161988..1164289- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04300.1 ID=NO04G04300.1|Name=NO04G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica)
GCCTGGTAGGGGAGAAGAGATAGAAGGGGCTGCAGTGTTCCACCCTTGAA
CAAAGCATTGATCAAGACCACCGTGGACAGAAGGTGTGGAATCAAACAAG
GAAAGCGATGTTTTGTGTTTTGTCGTCGGTAGTGAAGAGATACACATGGC
ACTGCAACTCTGGCACCAGATTGGCTGGTAGATCGACAGGGAGGAGGTTG
AAGCAAAGCGCGTACAAACCTTACCCGGCACTAGATTGTATGGCAAGGGC
TGCTGCATCCACTGTCTGGGTCAATGTCTCTATCTACTTCTAGATATTCA
TCATATTCATGTGTGTGGGCAGTGTGTGTGACATGAATACTTTTCAACTC
AACAAATTTTGCTTAATTGCTCCTCTACCAATTTTACCATTCCTATCACA
GAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCTTAT
CTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTGGGT
CGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTTGTC
TTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAGCCA
CATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGCTTG
GCTCATCCACGAGCCCATTAAGTGCAACGAGTAAGTATGAAGTATATGCA
AGAGCAGCGACGCCGGATACATCCCATATGTATATCCCCCCCTTTTTTTT
CTCTTCCTTTTTTTTCTTCCTTTTTTTTCTCCCCTCTTTCCTTCCCTTCT
CCCCCCGGAATGATTATCCACAAACATAAGGGATTTACCCGAGCCCTCTA
TTTCTCATTGAGGATGCGTTGACGAGCAAGTGTTTCCAAATCAGACTGAC
CGGTCCAATTCCCCTCCCCCCCTTCCCCCCTTTTCCCTCACATATACCGC
TTCTAGAATCCCAGTAATTCCCCTTTCTACCTCACATCACACCACTCAAA
CAGCCTTCATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACT
GATCCCCCCTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCT
CCGACTTGCCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCG
GATGCGTCATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCAT
CCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGG
TGAAAAAGCAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATC
ACACGGGGAAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTC
AAAAAAGTAGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAA
GGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTG
AGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATG
CATGGGACACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTT
CGTCAGACCCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGC
TACAAATGATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGG
TTGCAGACTGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGT
CGTGAGGGTGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGG
CCAAAAACAAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATC
GAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGT
GTTGGAAATGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACT
TAGATTTGTTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCA
GCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCA
GGAGGCGGACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGC
AGTTTGGGAGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGG
ACAAAGGCGTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTG
AGGGCGGGAGTGTGAGAAGGCATGTGCGTGAGATAATTGTGTGTATTTAC
TTCGGCGTGAGACGTTCCTTTTTCCATCCCATTTTGTCGATAGTAGCTAG
TGGCAGCAATTTGTACCTAGCCACTTCCAAATTAATACTTACGTACGTGG
AA back to topCoding sequence (CDS) from alignment at chr4:1161988..1164289- >NO04G04300.1 ID=NO04G04300.1|Name=NO04G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr4:1161988..1164289- (Nannochloropsis oceanica)
ATGAGGCCCTCTTTCGCATTCAGTGGGTCGCCTCTCCTCATTCTCCTTGC
TCTCGTCGTAACGACCACCGCCTTTGTCTTGCCAACTTGCCCCCAGCAGC
AGCGCTCCACCTTTGCCCAGCACAGCCACATCTACAGCACCCGCGCCAGC
CACAGTCTTTGTCGTGGTCGTCCGCTTGGCTCATCCACGAGCCCATTAAG
TGCAACGACCTTCATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATG
AAACTGATCCCCCCTCTTATACCGAAACTGACCGTAAACACATGCGTCGC
GCCCTCCGACTTGCCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGT
GGTCGGATGCGTCATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCT
TCCATCCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAG
GCAGGTGAAAAAGCAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATG
TAATCACACGGGGAAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAG
GTGTCAAAAAAGTAGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGG
GGGAAGGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGG
GTGTGAGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGG
TAATGCATGGGACACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCAT
AGCTTCGTCAGACCCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAA
GGCGCTACAAATGATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTG
AGGGGTTGCAGACTGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGAT
GAGGTCGTGAGGGTGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGA
GTGGGCCAAAAACAAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAA
ACATCGAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTC
GAGGTGTTGGAAATGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCA
TGACTTAGATTTGTTGTCGGCGTTATGGCTGTTGTGTCCGGAGGGGGCAA
AGGCAGCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACG
TTGCAGGAGGCGGACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGG
GAGGCAGTTTGGGAGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGA
TTGGGACAAAGGCGTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACG
CTTTGA back to top
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