NO04G03910, NO04G03910 (gene) Nannochloropsis oceanica

Overview
NameNO04G03910
Unique NameNO04G03910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2037
Alignment locationchr4:1053647..1055683 -

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Properties
Property NameValue
DescriptionSorting nexin-29
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1053647..1055683 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
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BLAST of NO04G03910 vs. NCBI_GenBank
Match: EWM28796.1 (sorting nexin-29 [Nannochloropsis gaditana])

HSP 1 Score: 342.0 bits (876), Expect = 1.800e-90
Identity = 223/305 (73.11%), Postives = 249/305 (81.64%), Query Frame = 0 
Query:    1 MAHRMESRQSRLSRISSRTDTEIFDDGKGEKRHTIYYMNIEVGRNKYYLRKRYTEFLMLHQRLCEQQYPEIEDFDFPIKVWFNNFSDGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPSVIDPPKKYPKTPVPGRRAIQKPAGLQDDPTD--SSXXXXXXXXXXXG------PIRSSFLARRRSSNYGDDDGAAGLGRDNSPTVVTAGVRVTSPTP---VESSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPTHARVSALSILGLSSVASLVVMRAFSTASAHDASKHSKS 295
            MAH +++RQSRLSRISSRTDTEIFDDG+GEKRHTIYYMNIEVGRNKYYL KRYTEFLMLHQ+LCEQQYPEIEDF+FP KVWFNNFS+GVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVP VI+PPK+YPKTPVPGR+ ++KP GL DDP+D  S+           G        RS FL+R+RSS    D+G    GR  SPT++T G RVTSP+P        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL+P++AR+SAL ILGLSSVASLVVMRAF  A+A DA + S S
Sbjct:    1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSS----DEGLVEQGRGESPTIITTGKRVTSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGS 301
The following BLAST results are available for this feature:
BLAST of NO04G03910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28796.11.800e-9073.11sorting nexin-29 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009404NSK009404Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03910.2NO04G03910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03910.1NO04G03910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579351gene_2174Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g123gene1814Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03910.2NO04G03910.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03910.1NO04G03910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03910 ID=NO04G03910|Name=NO04G03910|organism=Nannochloropsis oceanica|type=gene|length=2037bp
GACGCGTATTTGTGATGGGATGGACTCGGAGCTTGGCGCGCTTGTTGGCG
ACGTACGGCATACGACGACAGCGATTTCACCACCCAACGGCGCTAGTGCC
TGTGCGTCCCTCTTCAGCGCCCCCCATCTACTTGTCAACGCTGGGACGTA
CCATCAGCTTTCGAATCTATGCACGCCGTGAGACGGCGAGATGGCAGTTG
GTTGCGTATGTGGAGGACGCATGGGAGTCGTACCCGTGGCGGCCCATCTT
TGCTTGTTCGGTCCGCACTTGAGTGGCGTCGATCGTACTGGCTGGCACTC
TCTGGCCATTGAGGCAGAAAAGACAACAAGACACACACCCTGCAAAGGAG
CTATTTGTTCATAGCGCTTCAATCTAGCTTGGCTTTCCCATCCCATTACT
TCCTGTCTACCACACACCCCTACATAGGTTTGTGCTTCCCCGGGACGACG
ACGTCAAGACAACACTCTCGCTCGCCCACCCGCAACTAATTAGCCTTGAC
AGGAGACACGCACGCCTACATACAATCCCATAAATCCAGACAAGTATGGC
ACACCGCATGGAGTCACGGCAGTCGAGGCTGTCGCGCATATCGTCGCGCA
CCGACACGGAGATCTTTGACGACGGCAAGGGGGAGAAGCGgtaggtcttg
ggttgggttggtggggggacccggcagggggaagcagggcgagggaggtg
acacgacgtgattttacagtggaattattccagcttcctgtaacaaatga
aactggttctgaatgtgtattggtagtcgttgtgcatcttgttgtacttc
tgcgagttaacaatgcgtttccatgcatcgtccctcacacgcacgctcaa
acccacgaccacacccgcacagGCACACCATCTACTACATGAATATCGAG
GTGGGCCGTAACAAGTACTACTTGCGGAAGCGCTACACCGAGTTTCTCAT
GCTCCACCAGgtacgttttcgtctgcacttctttccttctccttctcttt
ggtccttttcccctgtttcatatcaagtcaccattccatccaccctcaca
cagAGACTCTGCGAGCAGCAATACCCCGAAATTGAGGACTTTGACTTTCC
TATTAAGGTCTGGTTCAACAATTTCTCCGACGGTGTCATCGAATACCGGC
GCACGCGCTTCGAGGCCTACTTGACCCTGCTTCTGGAGCTAGTCAACAAG
TACCCTCCCCTCCGTAAGGAAGTAGAGAGCTTCCTCGGCGTACCTTCTGT
CATTGATCCCCCGAAGAAATATCCTAAGACCCCAGTCCCAGGCCGCCGGG
CGATCCAGAAGCCTGCAGGGCTCCAAGACGACCCTACGGACTCCTCTTCT
TCCACTGCTTCTGCTGTTGCGCCTGCCGCAGGTCCTATTCGTTCATCTTT
CCTCGCCCGAAGACGTTCATCCAACTATGGAGATGATGATGGAGCTGCCG
GACTTGGGCGAGACAATTCGCCCACGGTGGTGACGGCGGGTGTGCGGGTC
ACCTCCCCCACTCCAGTGGAAAGCAGTACTGTGGCGGCTGCGTGCTCCTA
CACGTGTACGACAACCATCTTGGCTTATCTTTTTCTGTACATCTTCATTG
TATTTTTGCTGGCATTGGCTGCGGCATTAGAGCCTACTCATGCACGGGTG
AGCGCTCTGTCGATACTGGGCTTGTCTAGCGTGGCTTCCTTGGTGGTTAT
GCGCGCTTTTTCGACTGCCTCGGCGCATGACGCCAGCAAGCACTCTAAGA
GTGGAGAAGGGAGAGGAAAGCGTGTATAGATAGGGAGAGATCGGGAGAAA
TCGTGTATGGCGGTACATACATGTATGAGAGTATGGGAAATGGTTTGGTG
CATATTGGTTATGTGTAAATGTGTACTATTTAATGAAAGAAGTGAAAGAG
GGTGTGCGAGTTGATCGTGTCCAGAGGGAGTGTCATACCCAAACAAGAAG
TTGCAGAGGGACTTGGCTGTGTTAATTAAAAAGCATTGGTACAAAGTGAA
AATGAAATTGAAAGAAATTGATGTCTACAATGACTTT
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protein sequence of NO04G03910.2

>NO04G03910.2-protein ID=NO04G03910.2-protein|Name=NO04G03910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MAHRMESRQSRLSRISSRTDTEIFDDGKGEKRHTIYYMNIEVGRNKYYLR
KRYTEFLMLHQVRFRLHFFPSPSLWSFSPVSYQVTIPSTLTQRLCEQQYP
EIEDFDFPIKVWFNNFSDGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVE
SFLGVPSVIDPPKKYPKTPVPGRRAIQKPAGLQDDPTDSSSSTASAVAPA
AGPIRSSFLARRRSSNYGDDDGAAGLGRDNSPTVVTAGVRVTSPTPVESS
TVAAACSYTCTTTILAYLFLYIFIVFLLALAAALEPTHARVSALSILGLS
SVASLVVMRAFSTASAHDASKHSKSGEGRGKRV*
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protein sequence of NO04G03910.1

>NO04G03910.1-protein ID=NO04G03910.1-protein|Name=NO04G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MAHRMESRQSRLSRISSRTDTEIFDDGKGEKRHTIYYMNIEVGRNKYYLR
KRYTEFLMLHQRLCEQQYPEIEDFDFPIKVWFNNFSDGVIEYRRTRFEAY
LTLLLELVNKYPPLRKEVESFLGVPSVIDPPKKYPKTPVPGRRAIQKPAG
LQDDPTDSSSSTASAVAPAAGPIRSSFLARRRSSNYGDDDGAAGLGRDNS
PTVVTAGVRVTSPTPVESSTVAAACSYTCTTTILAYLFLYIFIVFLLALA
AALEPTHARVSALSILGLSSVASLVVMRAFSTASAHDASKHSKSGEGRGK
RV*
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Synonyms
Publications