NO04G03910.1, NO04G03910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03910.1
Unique NameNO04G03910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1712
Alignment locationchr4:1053647..1055683 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1053647..1055683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03910.1 vs.
Match: EWM28796.1 (sorting nexin-29 [Nannochloropsis gaditana])

HSP 1 Score: 393.3 bits (1009), Expect = 6.900e-106
Identity = 217/305 (71.15%), Postives = 247/305 (80.98%), Query Frame = 0 
Query:    1 MAHRMESRQSRLSRISSRTDTEIFDDGKGEKRHTIYYMNIEVGRNKYYLRKRYTEFLMLHQRLCEQQYPEIEDFDFPIKVWFNNFSDGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPSVIDPPKKYPKTPVPGRRAIQKPAGLQDDPTDSSSSTA---SAVAPAAGPI-----RSSFLARRRSSNYGDDDGAAGLGRDNSPTVVTAGVRVTSPTPVESSTVAA---ACSYTCTTTILAYLFLYIFIVFLLALAAALEPTHARVSALSILGLSSVASLVVMRAFSTASAHDASKHSKS 295
            MAH +++RQSRLSRISSRTDTEIFDDG+GEKRHTIYYMNIEVGRNKYYL KRYTEFLMLHQ+LCEQQYPEIEDF+FP KVWFNNFS+GVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVP VI+PPK+YPKTPVPGR+ ++KP GL DDP+D +S+      A AP    +     RS FL+R+RSS    D+G    GR  SPT++T G RVTSP+P ESS  AA   AC Y  TTTIL  L +YI +VFLLAL AAL+P++AR+SAL ILGLSSVASLVVMRAF  A+A DA + S S
Sbjct:    1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSS----DEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGS 301
The following BLAST results are available for this feature:
BLAST of NO04G03910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28796.16.900e-10671.15sorting nexin-29 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03910NO04G03910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03910.1NO04G03910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03910.1.cds1NO04G03910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03910.1.cds2NO04G03910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03910.1.cds3NO04G03910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03910.1 ID=NO04G03910.1|Name=NO04G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
GACGCGTATTTGTGATGGGATGGACTCGGAGCTTGGCGCGCTTGTTGGCG
ACGTACGGCATACGACGACAGCGATTTCACCACCCAACGGCGCTAGTGCC
TGTGCGTCCCTCTTCAGCGCCCCCCATCTACTTGTCAACGCTGGGACGTA
CCATCAGCTTTCGAATCTATGCACGCCGTGAGACGGCGAGATGGCAGTTG
GTTGCGTATGTGGAGGACGCATGGGAGTCGTACCCGTGGCGGCCCATCTT
TGCTTGTTCGGTCCGCACTTGAGTGGCGTCGATCGTACTGGCTGGCACTC
TCTGGCCATTGAGGCAGAAAAGACAACAAGACACACACCCTGCAAAGGAG
CTATTTGTTCATAGCGCTTCAATCTAGCTTGGCTTTCCCATCCCATTACT
TCCTGTCTACCACACACCCCTACATAGGTTTGTGCTTCCCCGGGACGACG
ACGTCAAGACAACACTCTCGCTCGCCCACCCGCAACTAATTAGCCTTGAC
AGGAGACACGCACGCCTACATACAATCCCATAAATCCAGACAAGTATGGC
ACACCGCATGGAGTCACGGCAGTCGAGGCTGTCGCGCATATCGTCGCGCA
CCGACACGGAGATCTTTGACGACGGCAAGGGGGAGAAGCGGCACACCATC
TACTACATGAATATCGAGGTGGGCCGTAACAAGTACTACTTGCGGAAGCG
CTACACCGAGTTTCTCATGCTCCACCAGAGACTCTGCGAGCAGCAATACC
CCGAAATTGAGGACTTTGACTTTCCTATTAAGGTCTGGTTCAACAATTTC
TCCGACGGTGTCATCGAATACCGGCGCACGCGCTTCGAGGCCTACTTGAC
CCTGCTTCTGGAGCTAGTCAACAAGTACCCTCCCCTCCGTAAGGAAGTAG
AGAGCTTCCTCGGCGTACCTTCTGTCATTGATCCCCCGAAGAAATATCCT
AAGACCCCAGTCCCAGGCCGCCGGGCGATCCAGAAGCCTGCAGGGCTCCA
AGACGACCCTACGGACTCCTCTTCTTCCACTGCTTCTGCTGTTGCGCCTG
CCGCAGGTCCTATTCGTTCATCTTTCCTCGCCCGAAGACGTTCATCCAAC
TATGGAGATGATGATGGAGCTGCCGGACTTGGGCGAGACAATTCGCCCAC
GGTGGTGACGGCGGGTGTGCGGGTCACCTCCCCCACTCCAGTGGAAAGCA
GTACTGTGGCGGCTGCGTGCTCCTACACGTGTACGACAACCATCTTGGCT
TATCTTTTTCTGTACATCTTCATTGTATTTTTGCTGGCATTGGCTGCGGC
ATTAGAGCCTACTCATGCACGGGTGAGCGCTCTGTCGATACTGGGCTTGT
CTAGCGTGGCTTCCTTGGTGGTTATGCGCGCTTTTTCGACTGCCTCGGCG
CATGACGCCAGCAAGCACTCTAAGAGTGGAGAAGGGAGAGGAAAGCGTGT
ATAGATAGGGAGAGATCGGGAGAAATCGTGTATGGCGGTACATACATGTA
TGAGAGTATGGGAAATGGTTTGGTGCATATTGGTTATGTGTAAATGTGTA
CTATTTAATGAAAGAAGTGAAAGAGGGTGTGCGAGTTGATCGTGTCCAGA
GGGAGTGTCATACCCAAACAAGAAGTTGCAGAGGGACTTGGCTGTGTTAA
TTAAAAAGCATTGGTACAAAGTGAAAATGAAATTGAAAGAAATTGATGTC
TACAATGACTTT
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protein sequence of NO04G03910.1

>NO04G03910.1-protein ID=NO04G03910.1-protein|Name=NO04G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MAHRMESRQSRLSRISSRTDTEIFDDGKGEKRHTIYYMNIEVGRNKYYLR
KRYTEFLMLHQRLCEQQYPEIEDFDFPIKVWFNNFSDGVIEYRRTRFEAY
LTLLLELVNKYPPLRKEVESFLGVPSVIDPPKKYPKTPVPGRRAIQKPAG
LQDDPTDSSSSTASAVAPAAGPIRSSFLARRRSSNYGDDDGAAGLGRDNS
PTVVTAGVRVTSPTPVESSTVAAACSYTCTTTILAYLFLYIFIVFLLALA
AALEPTHARVSALSILGLSSVASLVVMRAFSTASAHDASKHSKSGEGRGK
RV*
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mRNA from alignment at chr4:1053647..1055683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03910.1 ID=NO04G03910.1|Name=NO04G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp|location=Sequence derived from alignment at chr4:1053647..1055683- (Nannochloropsis oceanica)
GACGCGTATTTGTGATGGGATGGACTCGGAGCTTGGCGCGCTTGTTGGCG
ACGTACGGCATACGACGACAGCGATTTCACCACCCAACGGCGCTAGTGCC
TGTGCGTCCCTCTTCAGCGCCCCCCATCTACTTGTCAACGCTGGGACGTA
CCATCAGCTTTCGAATCTATGCACGCCGTGAGACGGCGAGATGGCAGTTG
GTTGCGTATGTGGAGGACGCATGGGAGTCGTACCCGTGGCGGCCCATCTT
TGCTTGTTCGGTCCGCACTTGAGTGGCGTCGATCGTACTGGCTGGCACTC
TCTGGCCATTGAGGCAGAAAAGACAACAAGACACACACCCTGCAAAGGAG
CTATTTGTTCATAGCGCTTCAATCTAGCTTGGCTTTCCCATCCCATTACT
TCCTGTCTACCACACACCCCTACATAGGTTTGTGCTTCCCCGGGACGACG
ACGTCAAGACAACACTCTCGCTCGCCCACCCGCAACTAATTAGCCTTGAC
AGGAGACACGCACGCCTACATACAATCCCATAAATCCAGACAAGTATGGC
ACACCGCATGGAGTCACGGCAGTCGAGGCTGTCGCGCATATCGTCGCGCA
CCGACACGGAGATCTTTGACGACGGCAAGGGGGAGAAGCGGTAGGTCTTG
GGTTGGGTTGGTGGGGGGACCCGGCAGGGGGAAGCAGGGCGAGGGAGGTG
ACACGACGTGATTTTACAGTGGAATTATTCCAGCTTCCTGTAACAAATGA
AACTGGTTCTGAATGTGTATTGGTAGTCGTTGTGCATCTTGTTGTACTTC
TGCGAGTTAACAATGCGTTTCCATGCATCGTCCCTCACACGCACGCTCAA
ACCCACGACCACACCCGCACAGGCACACCATCTACTACATGAATATCGAG
GTGGGCCGTAACAAGTACTACTTGCGGAAGCGCTACACCGAGTTTCTCAT
GCTCCACCAGGTACGTTTTCGTCTGCACTTCTTTCCTTCTCCTTCTCTTT
GGTCCTTTTCCCCTGTTTCATATCAAGTCACCATTCCATCCACCCTCACA
CAGAGACTCTGCGAGCAGCAATACCCCGAAATTGAGGACTTTGACTTTCC
TATTAAGGTCTGGTTCAACAATTTCTCCGACGGTGTCATCGAATACCGGC
GCACGCGCTTCGAGGCCTACTTGACCCTGCTTCTGGAGCTAGTCAACAAG
TACCCTCCCCTCCGTAAGGAAGTAGAGAGCTTCCTCGGCGTACCTTCTGT
CATTGATCCCCCGAAGAAATATCCTAAGACCCCAGTCCCAGGCCGCCGGG
CGATCCAGAAGCCTGCAGGGCTCCAAGACGACCCTACGGACTCCTCTTCT
TCCACTGCTTCTGCTGTTGCGCCTGCCGCAGGTCCTATTCGTTCATCTTT
CCTCGCCCGAAGACGTTCATCCAACTATGGAGATGATGATGGAGCTGCCG
GACTTGGGCGAGACAATTCGCCCACGGTGGTGACGGCGGGTGTGCGGGTC
ACCTCCCCCACTCCAGTGGAAAGCAGTACTGTGGCGGCTGCGTGCTCCTA
CACGTGTACGACAACCATCTTGGCTTATCTTTTTCTGTACATCTTCATTG
TATTTTTGCTGGCATTGGCTGCGGCATTAGAGCCTACTCATGCACGGGTG
AGCGCTCTGTCGATACTGGGCTTGTCTAGCGTGGCTTCCTTGGTGGTTAT
GCGCGCTTTTTCGACTGCCTCGGCGCATGACGCCAGCAAGCACTCTAAGA
GTGGAGAAGGGAGAGGAAAGCGTGTATAGATAGGGAGAGATCGGGAGAAA
TCGTGTATGGCGGTACATACATGTATGAGAGTATGGGAAATGGTTTGGTG
CATATTGGTTATGTGTAAATGTGTACTATTTAATGAAAGAAGTGAAAGAG
GGTGTGCGAGTTGATCGTGTCCAGAGGGAGTGTCATACCCAAACAAGAAG
TTGCAGAGGGACTTGGCTGTGTTAATTAAAAAGCATTGGTACAAAGTGAA
AATGAAATTGAAAGAAATTGATGTCTACAATGACTTT
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Coding sequence (CDS) from alignment at chr4:1053647..1055683-

>NO04G03910.1 ID=NO04G03910.1|Name=NO04G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr4:1053647..1055683- (Nannochloropsis oceanica)
ATGGCACACCGCATGGAGTCACGGCAGTCGAGGCTGTCGCGCATATCGTC
GCGCACCGACACGGAGATCTTTGACGACGGCAAGGGGGAGAAGCGGCACA
CCATCTACTACATGAATATCGAGGTGGGCCGTAACAAGTACTACTTGCGG
AAGCGCTACACCGAGTTTCTCATGCTCCACCAGAGACTCTGCGAGCAGCA
ATACCCCGAAATTGAGGACTTTGACTTTCCTATTAAGGTCTGGTTCAACA
ATTTCTCCGACGGTGTCATCGAATACCGGCGCACGCGCTTCGAGGCCTAC
TTGACCCTGCTTCTGGAGCTAGTCAACAAGTACCCTCCCCTCCGTAAGGA
AGTAGAGAGCTTCCTCGGCGTACCTTCTGTCATTGATCCCCCGAAGAAAT
ATCCTAAGACCCCAGTCCCAGGCCGCCGGGCGATCCAGAAGCCTGCAGGG
CTCCAAGACGACCCTACGGACTCCTCTTCTTCCACTGCTTCTGCTGTTGC
GCCTGCCGCAGGTCCTATTCGTTCATCTTTCCTCGCCCGAAGACGTTCAT
CCAACTATGGAGATGATGATGGAGCTGCCGGACTTGGGCGAGACAATTCG
CCCACGGTGGTGACGGCGGGTGTGCGGGTCACCTCCCCCACTCCAGTGGA
AAGCAGTACTGTGGCGGCTGCGTGCTCCTACACGTGTACGACAACCATCT
TGGCTTATCTTTTTCTGTACATCTTCATTGTATTTTTGCTGGCATTGGCT
GCGGCATTAGAGCCTACTCATGCACGGGTGAGCGCTCTGTCGATACTGGG
CTTGTCTAGCGTGGCTTCCTTGGTGGTTATGCGCGCTTTTTCGACTGCCT
CGGCGCATGACGCCAGCAAGCACTCTAAGAGTGGAGAAGGGAGAGGAAAG
CGTGTATAG
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Synonyms
Publications