NO04G03630, NO04G03630 (gene) Nannochloropsis oceanica

Overview
NameNO04G03630
Unique NameNO04G03630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length426
Alignment locationchr4:987672..988097 -

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Properties
Property NameValue
DescriptionElongation factor Ts, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:987672..988097 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036402EF-Ts_dimer_sf
IPR001816Transl_elong_EFTs/EF1B
IPR014039Transl_elong_EFTs/EF1B_dimer
Homology
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 1.800e-48
Identity = 104/136 (76.47%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MGAAAGLVAIQSSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELG 137
            MGAAAGLVA+Q  K P+  PAL  FGKRLAMHVVAAKPR+LSP+S+PPSVLEYER LI AQAAGS KP  +VAKMTEGRLRK LGEISLLEQ HMIEEG P V+E+AAR+GKE GC  ++VVGFVRYKCG+VE LG
Sbjct:  217 MGAAAGLVAVQCDKLPSQMPALDSFGKRLAMHVVAAKPRFLSPASVPPSVLEYERELIQAQAAGSQKPPAIVAKMTEGRLRKFLGEISLLEQPHMIEEGNPTVAEVAARLGKEAGCV-VDVVGFVRYKCGEVEGLG 351
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: GAY06196.1 (elongation factor Ts, putative [Pythium insidiosum])

HSP 1 Score: 114.0 bits (284), Expect = 3.800e-22
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ---SSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA++   SS +   A  + L GKRLAMH+VAAKP+YLS  ++P +++E ER+ +  Q   S KPA ++AKMTEGRL K  GE++LLEQ H IEEG P V      V K+ G   ++V  + R++ G  +E
Sbjct:  194 LGRAGALVALEYPSSSVSSEQAQEIALLGKRLAMHIVAAKPKYLSRDAVPEAIVEKERAFLLEQVKDSGKPANILAKMTEGRLNKFFGELTLLEQDHFIEEGSPKVGAFVDGVAKKLGV-SIKVAAYERFEIGAEDE 329
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: GAX95054.1 (elongation factor Ts, putative [Pythium insidiosum])

HSP 1 Score: 114.0 bits (284), Expect = 3.800e-22
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ---SSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA++   SS +   A  + L GKRLAMH+VAAKP+YLS  ++P +++E ER+ +  Q   S KPA ++AKMTEGRL K  GE++LLEQ H IEEG P V      V K+ G   ++V  + R++ G  +E
Sbjct:  633 LGRAGALVALEYPSSSVSSEQAQEIALLGKRLAMHIVAAKPKYLSRDAVPEAIVEKERAFLLEQVKDSGKPANILAKMTEGRLNKFFGELTLLEQDHFIEEGSPKVGAFVDGVAKKLGV-SIKVAAYERFEIGAEDE 768
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: OWZ23578.1 (Elongation factor Ts [Phytophthora megakarya])

HSP 1 Score: 112.5 bits (280), Expect = 1.100e-21
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA+Q  SKT +     G+   G RLAMHVVAAKPR+LS  ++P +++E ER+ +A Q   S KPA +VAKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E
Sbjct:  191 LGRAGALVALQFPSKTASAEQVAGVKELGHRLAMHVVAAKPRFLSRETVPEALVEKERAFLADQVKDSGKPAHIVAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGAFVAEQAKKLGMD-VSVAAYERFEVGESKE 326
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: XP_002896486.1 (elongation factor Ts, putative [Phytophthora infestans T30-4] >EEY67513.1 elongation factor Ts, putative [Phytophthora infestans T30-4])

HSP 1 Score: 111.7 bits (278), Expect = 1.900e-21
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELGK 138
            +G A  LVA+Q  SK+ +     G+   G RLAMH+VAAKPR+LS  ++P +++E ER+ +A Q   S KPA +VAKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E  K
Sbjct:  193 LGRAGALVALQFPSKSASAEQVAGVKELGHRLAMHIVAAKPRFLSRETVPEALVEKERAFLADQVKDSGKPAHIVAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGAFVAEQAKKLGVD-VSVAAYERFEVGESKEEAK 331
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: ETI31729.1 (translation elongation factor Ts, partial [Phytophthora parasitica P1569] >ETK72092.1 translation elongation factor Ts, partial [Phytophthora parasitica] >ETM32022.1 translation elongation factor Ts, partial [Phytophthora parasitica] >ETO60440.1 translation elongation factor Ts, partial [Phytophthora parasitica P1976])

HSP 1 Score: 110.2 bits (274), Expect = 5.500e-21
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA+Q  SKT +     G+   G RLAMH+VAAKPR+LS  ++P +++E ER  +A Q   S KPA ++AKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E
Sbjct:  229 LGRAGALVALQFPSKTASAEQVAGVKELGHRLAMHIVAAKPRFLSRETVPEALVEKERVFLADQVKDSGKPAHIIAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGVFVAEQAKKLGVD-VSVAAYERFEVGESKE 364
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: XP_008915059.1 (translation elongation factor Ts [Phytophthora parasitica INRA-310] >ETL25535.1 translation elongation factor Ts [Phytophthora parasitica] >ETL78749.1 translation elongation factor Ts [Phytophthora parasitica] >ETM99681.1 translation elongation factor Ts [Phytophthora parasitica INRA-310] >ETP01528.1 translation elongation factor Ts [Phytophthora parasitica CJ01A1] >ETP29697.1 translation elongation factor Ts [Phytophthora parasitica P10297] >KUG02279.1 Elongation factor Ts [Phytophthora nicotianae])

HSP 1 Score: 110.2 bits (274), Expect = 5.500e-21
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA+Q  SKT +     G+   G RLAMH+VAAKPR+LS  ++P +++E ER  +A Q   S KPA ++AKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E
Sbjct:  193 LGRAGALVALQFPSKTASAEQVAGVKELGHRLAMHIVAAKPRFLSRETVPEALVEKERVFLADQVKDSGKPAHIIAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGVFVAEQAKKLGVD-VSVAAYERFEVGESKE 328
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: POM61337.1 (Translation elongation factor Ts [Phytophthora palmivora var. palmivora])

HSP 1 Score: 110.2 bits (274), Expect = 5.500e-21
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +  A  LVA+Q  SKT +     G+   G RLAMHVVAAKPR+LS  ++P +++E ER+ +A Q   S KPA +VAKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E
Sbjct:  196 LSRAGALVALQFPSKTASAEQVAGVKELGHRLAMHVVAAKPRFLSRETVPEALVEKERAFLADQVKDSGKPAHIVAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGAFVAEQAKKLGVD-VSVAAYERFEVGESKE 331
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: XP_009533895.1 (hypothetical protein PHYSODRAFT_352454 [Phytophthora sojae] >EGZ11150.1 hypothetical protein PHYSODRAFT_352454 [Phytophthora sojae])

HSP 1 Score: 108.6 bits (270), Expect = 1.600e-20
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA+Q  SK+ +     G+   G RLAMH+VAAKPR+L+  ++P +++E ER+ +A Q   S KPA +VAKMTEGRL K  GE +LLEQ H IEEG P V    A   K+ G + + V  + R++ G+ +E
Sbjct:  194 LGRAGALVALQYPSKSASAEQVAGVKELGHRLAMHIVAAKPRFLTRETVPEALVEKERAFLADQVKDSGKPAHIVAKMTEGRLNKFFGEFTLLEQDHFIEEGNPKVGAFVAEQAKKLGVD-VTVAAYERFEVGEGKE 329
[Close]
BLAST of NO04G03630 vs. NCBI_GenBank
Match: XP_024577939.1 (elongation factor ts [Plasmopara halstedii] >CEG41570.1 elongation factor ts [Plasmopara halstedii])

HSP 1 Score: 104.4 bits (259), Expect = 3.000e-19
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 0 
Query:    1 MGAAAGLVAIQ-SSKTPTDAPALGL--FGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEE 135
            +G A  LVA++  SKT T     G+   G RLAMHV+AA PR+LS  ++P  ++E ER+ +A     S KPA +VAKMTEGRL K  GE +LLEQ H+IEEG P V    A   K  G + + V  + R++ G+  E
Sbjct:  192 LGRAGALVALRYLSKTATAEQTAGVRELGHRLAMHVMAANPRFLSRETVPAELVEKERAYLADLVKDSGKPAHIVAKMTEGRLSKFFGECTLLEQPHLIEEGNPRVGTFIAEQSKRLGVD-VTVTAYERFEVGETNE 327
The following BLAST results are available for this feature:
BLAST of NO04G03630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
50100150200250300350400Expect = 1.80e-48 / Id = 76.47Expect = 3.80e-22 / Id = 45.26Expect = 3.80e-22 / Id = 45.26Expect = 1.10e-21 / Id = 47.45Expect = 1.90e-21 / Id = 45.71Expect = 5.50e-21 / Id = 45.99Expect = 5.50e-21 / Id = 45.99Expect = 5.50e-21 / Id = 46.72Expect = 1.60e-20 / Id = 45.26Expect = 3.00e-19 / Id = 45.26SequenceEWM28678.1GAY06196.1GAX95054.1OWZ23578.1XP_002896486.1ETI31729.1XP_008915059.1POM61337.1XP_009533895.1XP_024577939.1
Match NameE-valueIdentityDescription
EWM28678.11.800e-4876.47elongation factor ts [Nannochloropsis gaditana][more]
GAY06196.13.800e-2245.26elongation factor Ts, putative [Pythium insidiosum... [more]
GAX95054.13.800e-2245.26elongation factor Ts, putative [Pythium insidiosum... [more]
OWZ23578.11.100e-2147.45Elongation factor Ts [Phytophthora megakarya][more]
XP_002896486.11.900e-2145.71elongation factor Ts, putative [Phytophthora infes... [more]
ETI31729.15.500e-2145.99translation elongation factor Ts, partial [Phytoph... [more]
XP_008915059.15.500e-2145.99translation elongation factor Ts [Phytophthora par... [more]
POM61337.15.500e-2146.72Translation elongation factor Ts [Phytophthora pal... [more]
XP_009533895.11.600e-2045.26hypothetical protein PHYSODRAFT_352454 [Phytophtho... [more]
XP_024577939.13.000e-1945.26elongation factor ts [Plasmopara halstedii] >CEG41... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009441NSK009441Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03630.1NO04G03630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624914gene_2146Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g92gene1840Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03630.1NO04G03630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03630 ID=NO04G03630|Name=NO04G03630|organism=Nannochloropsis oceanica|type=gene|length=426bp
ATGGGCGCCGCTGCCGGCCTTGTGGCGATCCAATCATCGAAAACCCCAAC
AGATGCCCCTGCGCTTGGCCTCTTCGGGAAACGCCTCGCCATGCACGTTG
TCGCGGCCAAGCCTCGTTACCTCTCCCCCTCCTCCATCCCTCCCTCAGTC
TTGGAATACGAGCGTAGCTTGATAGCAGCTCAAGCTGCGGGAAGCAACAA
ACCGGCTAAGGTTGTGGCAAAAATGACGGAGGGGAGGCTGAGAAAGGTGT
TGGGGGAGATTTCCCTGTTGGAACAGCAGCACATGATAGAGGAGGGGAAG
CCGATCGTATCTGAGCTTGCGGCACGGGTGGGTAAGGAACAGGGATGTGA
GGGGATGGAGGTAGTGGGTTTTGTGAGGTACAAGTGTGGTGATGTGGAGG
AGTTGGGGAAGGGAAGGAATAATTAG
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protein sequence of NO04G03630.1

>NO04G03630.1-protein ID=NO04G03630.1-protein|Name=NO04G03630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGAAAGLVAIQSSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSV
LEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGK
PIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELGKGRNN*
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Synonyms
Publications