NO04G03630.1, NO04G03630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03630.1
Unique NameNO04G03630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length426
Alignment locationchr4:987672..988097 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:987672..988097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03630.1 vs.
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 1.800e-48
Identity = 104/136 (76.47%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MGAAAGLVAIQSSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSVLEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGKPIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELG 137
            MGAAAGLVA+Q  K P+  PAL  FGKRLAMHVVAAKPR+LSP+S+PPSVLEYER LI AQAAGS KP  +VAKMTEGRLRK LGEISLLEQ HMIEEG P V+E+AAR+GKE GC  ++VVGFVRYKCG+VE LG
Sbjct:  217 MGAAAGLVAVQCDKLPSQMPALDSFGKRLAMHVVAAKPRFLSPASVPPSVLEYERELIQAQAAGSQKPPAIVAKMTEGRLRKFLGEISLLEQPHMIEEGNPTVAEVAARLGKEAGCV-VDVVGFVRYKCGEVEGLG 351
The following BLAST results are available for this feature:
BLAST of NO04G03630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400Expect = 1.80e-48 / Id = 76.47SequenceEWM28678.1
Match NameE-valueIdentityDescription
EWM28678.11.800e-4876.47elongation factor ts [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03630NO04G03630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03630.1NO04G03630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03630.1.cds1NO04G03630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03630.1 ID=NO04G03630.1|Name=NO04G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=426bp
ATGGGCGCCGCTGCCGGCCTTGTGGCGATCCAATCATCGAAAACCCCAAC
AGATGCCCCTGCGCTTGGCCTCTTCGGGAAACGCCTCGCCATGCACGTTG
TCGCGGCCAAGCCTCGTTACCTCTCCCCCTCCTCCATCCCTCCCTCAGTC
TTGGAATACGAGCGTAGCTTGATAGCAGCTCAAGCTGCGGGAAGCAACAA
ACCGGCTAAGGTTGTGGCAAAAATGACGGAGGGGAGGCTGAGAAAGGTGT
TGGGGGAGATTTCCCTGTTGGAACAGCAGCACATGATAGAGGAGGGGAAG
CCGATCGTATCTGAGCTTGCGGCACGGGTGGGTAAGGAACAGGGATGTGA
GGGGATGGAGGTAGTGGGTTTTGTGAGGTACAAGTGTGGTGATGTGGAGG
AGTTGGGGAAGGGAAGGAATAATTAG
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protein sequence of NO04G03630.1

>NO04G03630.1-protein ID=NO04G03630.1-protein|Name=NO04G03630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGAAAGLVAIQSSKTPTDAPALGLFGKRLAMHVVAAKPRYLSPSSIPPSV
LEYERSLIAAQAAGSNKPAKVVAKMTEGRLRKVLGEISLLEQQHMIEEGK
PIVSELAARVGKEQGCEGMEVVGFVRYKCGDVEELGKGRNN*
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mRNA from alignment at chr4:987672..988097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03630.1 ID=NO04G03630.1|Name=NO04G03630.1|organism=Nannochloropsis oceanica|type=mRNA|length=426bp|location=Sequence derived from alignment at chr4:987672..988097- (Nannochloropsis oceanica)
ATGGGCGCCGCTGCCGGCCTTGTGGCGATCCAATCATCGAAAACCCCAAC
AGATGCCCCTGCGCTTGGCCTCTTCGGGAAACGCCTCGCCATGCACGTTG
TCGCGGCCAAGCCTCGTTACCTCTCCCCCTCCTCCATCCCTCCCTCAGTC
TTGGAATACGAGCGTAGCTTGATAGCAGCTCAAGCTGCGGGAAGCAACAA
ACCGGCTAAGGTTGTGGCAAAAATGACGGAGGGGAGGCTGAGAAAGGTGT
TGGGGGAGATTTCCCTGTTGGAACAGCAGCACATGATAGAGGAGGGGAAG
CCGATCGTATCTGAGCTTGCGGCACGGGTGGGTAAGGAACAGGGATGTGA
GGGGATGGAGGTAGTGGGTTTTGTGAGGTACAAGTGTGGTGATGTGGAGG
AGTTGGGGAAGGGAAGGAATAATTAG
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Coding sequence (CDS) from alignment at chr4:987672..988097-

>NO04G03630.1 ID=NO04G03630.1|Name=NO04G03630.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr4:987672..988097- (Nannochloropsis oceanica)
ATGGGCGCCGCTGCCGGCCTTGTGGCGATCCAATCATCGAAAACCCCAAC
AGATGCCCCTGCGCTTGGCCTCTTCGGGAAACGCCTCGCCATGCACGTTG
TCGCGGCCAAGCCTCGTTACCTCTCCCCCTCCTCCATCCCTCCCTCAGTC
TTGGAATACGAGCGTAGCTTGATAGCAGCTCAAGCTGCGGGAAGCAACAA
ACCGGCTAAGGTTGTGGCAAAAATGACGGAGGGGAGGCTGAGAAAGGTGT
TGGGGGAGATTTCCCTGTTGGAACAGCAGCACATGATAGAGGAGGGGAAG
CCGATCGTATCTGAGCTTGCGGCACGGGTGGGTAAGGAACAGGGATGTGA
GGGGATGGAGGTAGTGGGTTTTGTGAGGTACAAGTGTGGTGATGTGGAGG
AGTTGGGGAAGGGAAGGAATAATTAG
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Synonyms
Publications