NO04G03570, NO04G03570 (gene) Nannochloropsis oceanica

Overview
NameNO04G03570
Unique NameNO04G03570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr4:969562..971223 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin thioesterase OTU1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:969562..971223 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR009060UBA-like
IPR038765Papain_like_cys_pep_sf
IPR000626Ubiquitin-like
IPR003323OTU_dom
IPR015940UBA/transl_elong_EF1B_N_euk
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0009056catabolic process
GO:0006950response to stress
GO:0006810transport
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_005856008.1 (ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526] >EKU20356.1 ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 519.2 bits (1336), Expect = 1.100e-143
Identity = 252/358 (70.39%), Postives = 297/358 (82.96%), Query Frame = 0 
Query:   45 INGPEGKSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETALVTALGIQSGSAITVVREAANESASVAAAAVTITSAVRQLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            +NGP GKS +LKGL D  TLQQL+ K++E  GVP  +QKLRA FPPKD+ +QD TA +T+LGIQ+GSAITVV+E    ++   A         +Q++DMGF  AVA KALE++H +V  AL+LC+ G++T+ESL   P  PP VPV++HGGM+TANRVM+RRV+DADNSCLFNA+GYCMEK+R++G KLR+IIADCVRN PDVYTEA LGK PK+YSDWIQDP QWGGEIELF+LSQYYGCE+VA+EIKS HAYVYGEGKNYSRRIY+LYDGVHYDALAMAAGSPTAPESLDMTQFPAGDE +K AALAVAA+LK+ RQFVD+ G TLRC+ C KGLSGQEEA  HA  T HQNFGEY
Sbjct:    8 VNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQVTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPP-VPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEY 364
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: EWM28713.1 (Ubiquitin-associated/translation elongation factor EF1B [Nannochloropsis gaditana])

HSP 1 Score: 518.8 bits (1335), Expect = 1.500e-143
Identity = 252/358 (70.39%), Postives = 297/358 (82.96%), Query Frame = 0 
Query:   45 INGPEGKSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETALVTALGIQSGSAITVVREAANESASVAAAAVTITSAVRQLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            +NGP GKS +LKGL D  TLQQL+ K++E  GVP  +QKLRA FPPKD+ +QD TA +T+LGIQ+GSAITVV+E    ++   A         +Q++DMGF  AVA KALE++H +V  AL+LC+ G++T+ESL   P  PP VPV++HGGM+TANRVM+RRV+DADNSCLFNA+GYCMEK+R++G KLR+IIADCVRN PDVYTEA LGK PK+YSDWIQDP QWGGEIELF+LSQYYGCE+VA+EIKS HAYVYGEGKNYSRRIY+LYDGVHYDALAMAAGSPTAPESLDMTQFPAGDE +K AALAVAA+LK+ RQFVD+ G TLRC+ C KGLSGQEEA  HA  T HQNFGEY
Sbjct:    7 VNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPP-VPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEY 363
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: CBJ33311.1 (OTU-like cysteine protease [Ectocarpus siliculosus])

HSP 1 Score: 269.6 bits (688), Expect = 1.500e-68
Identity = 160/397 (40.30%), Postives = 220/397 (55.42%), Query Frame = 0 
Query:   47 GPEGKSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETALVTALGIQSGSAITVVREAA------------------------------------------NESASVAAAAVTITSAVRQLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGE 402
            G    S  L GLDDG+TL +LK  + E  G+     +L+A FPPKDV   D   +V +LGI SGSA+TV+   A                                                        + V+ L+DMGF    AAKALE+A  D+  A+E+C+ G     +LGS      S         +TA R+M+RR++DADNSCLFNA+GY + + RK+GT+LR++I + VR  P+VY E  LGK P+EY +WI DP  WGGEIEL +LS+     I  V+I++ +AY YGE   + RR++++YDG+HYDALA AA + TAPES D+T F   ++  +  A  VAA LK   Q+ DM   +L+C+ C K L+G++ A  HA AT HQNFG+
Sbjct:   10 GAGASSARLLGLDDGITLSELKGVIAEKSGIETHRAQLKAGFPPKDVSGSDADPVV-SLGITSGSALTVLERKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEPAVDPALVQSLVDMGFEQGFAAKALEVAGGDINTAVEICMSG--DPAALGSDSGRAAST--------ATAARIMVRRIIDADNSCLFNAVGYALRRKRKVGTELRQMITEAVRGSPEVYNEGILGKQPEEYCNWISDPKSWGGEIELSILSKKLVVMITVVDIQTNNAYSYGEEHGFGRRLFIIYDGIHYDALAEAA-NETAPESDDVTVFNPSEKEKEILAKTVAADLKARNQYTDMGNASLKCMVCFKLLAGEKGALEHARATGHQNFGQ 394
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: PRP86231.1 (C2H2-type zinc finger-containing protein [Planoprotostelium fungivorum])

HSP 1 Score: 226.1 bits (575), Expect = 2.000e-55
Identity = 126/338 (37.28%), Postives = 190/338 (56.21%), Query Frame = 0 
Query:   67 LKDKVQETFGVPGVEQKLRASFPPKDVVMQDETALVTALGIQSGSAITV-VREAANESASVAAAAVTITSAVRQLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCME-KDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            L+  ++++ G+P   QK+   FPPK++   ++T L  A GIQ    IT+ VR     + ++  +++  T+ +          A  +K+ E    D+                              T  G++ ++  ++RRVVD+DNSCLFN+IGY +E +DRK+G +LR+II D + + PD Y EA LGKT  EY +W+   T WGG IEL +L+ YY CEI A +IK+   Y YGEGK Y +R++++YDG+HYDA+A     P+ PE +D+T F   D+   + A+ +  +  + R+F D  GF+LRC  C  GL G++EA  HA  T HQNF EY
Sbjct:   27 LQALIEQSTGIPANLQKVLTGFPPKEISCSNDTTL-QAAGIQGNDTITIQVRTEPISTGTIPTSSIISTATI----------APPSKS-ERPKRDI----------------------------TITDVGLTPSDGTVVRRVVDSDNSCLFNSIGYVLEGRDRKVGPRLRKIIVDTIASDPDEYNEAILGKTNTEYRNWLLKDTSWGGGIELSILADYYQCEISAFDIKTTKVYNYGEGKGYKQRVFLIYDGIHYDAMAFTF-DPSFPEDMDITIFSPKDDAATNKAMKLVQEANKAREFTDTGGFSLRCGVCQTGLKGEKEALEHAKKTGHQNFQEY 323
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_005642758.1 (OTU-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE18214.1 OTU-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50
Identity = 111/223 (49.78%), Postives = 146/223 (65.47%), Query Frame = 0 
Query:  183 APPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPA-GDEGTK--DAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            APP SV V   GG   +  V++RRVV +DNSCLFNA+GY +E+ R   + LRR+IA+ V   P+ Y+EA LGK  KEY  WI+DP +WGG IEL +LS+Y+G EI A ++++    VYG+   Y  R+ ++YDG+HYDALA+AA    APE +D+T F   G E      AA  + A+  + RQF D A FTLRC  C  G+ G++EA  HA AT HQNFGEY
Sbjct:    4 APPASVAVP--GG---SGSVVVRRVVASDNSCLFNAVGYVVERSRDKASHLRRVIAETVAGDPEEYSEAFLGKPNKEYCAWIKDPQKWGGAIELSILSRYFGREIAAYDVQTKRCDVYGQDAGYEERVMLIYDGLHYDALAVAA-FEGAPEDVDITMFDTHGSEADSIGRAAAELVAKSHEARQFTDTANFTLRCGVCQLGVKGEKEALEHAKATGHQNFGEY 220
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_001696776.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 203.0 bits (515), Expect = 1.800e-48
Identity = 101/203 (49.75%), Postives = 131/203 (64.53%), Query Frame = 0 
Query:  203 MIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQF---PAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            ++RRVVD+DNSCLFNA+GY ME  R    +LRR++AD VR+ P  + E  LGK  + Y DWIQ P +WGG IELF+L+Q+Y  EI A +I++    +YG+ K Y  R+ ++YDG+HYDALA+AA +  APE LD+T F    AG      AA  +       RQF D A FTLRC  C  G+ G++EA  HA AT H NF EY
Sbjct:    1 VVRRVVDSDNSCLFNAVGYVMEGSRSTAARLRRVVADAVRSDPFTFNEGFLGKAVEVYCDWIQQPDKWGGAIELFILAQHYKREIAAFDIRTKRCDIYGQDKGYPDRVLLIYDGLHYDALAVAAFA-GAPEELDVTCFEPDTAGGRAITAAAEKLVEATNAARQFTDTANFTLRCGVCQIGIKGEKEAVEHAKATGHSNFAEY 202
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_005843374.1 (hypothetical protein CHLNCDRAFT_28255 [Chlorella variabilis] >EFN51272.1 hypothetical protein CHLNCDRAFT_28255 [Chlorella variabilis])

HSP 1 Score: 202.6 bits (514), Expect = 2.300e-48
Identity = 99/203 (48.77%), Postives = 132/203 (65.02%), Query Frame = 0 
Query:  203 MIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTK---DAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            ++RR++D+DNSCLFNA+GY  E+ RKL  +LR++IAD V   P  + EA LGK P EY  WI+DP +WGG IEL +LS++ G EI A +I++    +YG+G  YS R+ ++YDG+HYDALA+AA    APE LD+T  P     T+     A  +A + +  R F D A FTLRC  C  GL G++EA  HA  T H NF EY
Sbjct:   95 VVRRIIDSDNSCLFNAVGYVTERSRKLAPRLRQVIADAVLADPFEWNEAVLGKEPAEYCRWIKDPNKWGGAIELSILSRHLGREIAAFDIQTTRVDIYGQGSGYSERVMLIYDGLHYDALAVAA-FEGAPEQLDVTVIPTSGTRTEMVMQGAKQLATKAQTARAFTDTANFTLRCGVCQIGLKGEKEAVEHAKTTGHTNFSEY 296
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_009399222.1 (PREDICTED: ubiquitin thioesterase OTU1 [Musa acuminata subsp. malaccensis] >XP_009399223.1 PREDICTED: ubiquitin thioesterase OTU1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 201.4 bits (511), Expect = 5.100e-48
Identity = 100/207 (48.31%), Postives = 135/207 (65.22%), Query Frame = 0 
Query:  200 NRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGT----KDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            + +++RRV+ +DNSCLFNA+GY ME D+     LR++IA  V + P  YTEA LGK   EY  WIQDP +WGG IEL +LS+YYG EI A +I+S    +YG+GK+Y  R+ ++YDG+HYDALAM+     APE  D T F    + +    ++ +L +     ++R + D A FTLRC  C  GL+GQ+EA AHA AT H NF EY
Sbjct:    2 DEIVVRRVIPSDNSCLFNAVGYVMEHDKTKAPYLRQVIAAVVASDPGKYTEAFLGKPNNEYCAWIQDPDKWGGAIELSILSEYYGREIAAYDIQSTRCDLYGQGKSYQERVMLIYDGLHYDALAMSP-FEGAPEEFDQTVFSIRSDRSIGPVENLSLNLVKDAHRKRSYTDTANFTLRCGVCQVGLTGQKEAIAHAQATGHVNFQEY 207
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_015083052.1 (PREDICTED: ubiquitin thioesterase OTU1 [Solanum pennellii] >XP_015083053.1 PREDICTED: ubiquitin thioesterase OTU1 [Solanum pennellii])

HSP 1 Score: 201.4 bits (511), Expect = 5.100e-48
Identity = 98/204 (48.04%), Postives = 138/204 (67.65%), Query Frame = 0 
Query:  203 MIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQL----KQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            ++RRV+ +DNSCLFNA+GY M++DR    +LR++IA  V + P+ Y++A LGK+ KEY DWI +P +WGG IEL +L+ +YG EI A +I+++   +YG+GKNY  R+ ++YDG+HYDALAM+  +  APE  D T F    +GT   A  +A  L    +++R + D A FTLRC  C  G+ GQ+EA  HA AT H NF EY
Sbjct:    5 VVRRVIPSDNSCLFNAVGYVMDRDRNKAPELRQVIAGTVASDPEKYSDAFLGKSNKEYCDWILNPEKWGGAIELSILADHYGREIAAYDIQTMRCDLYGQGKNYQERVMLIYDGLHYDALAMSP-ADGAPEDFDQTIFSVQRDGTVGPAERLALNLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEY 207
[Close]
BLAST of NO04G03570 vs. NCBI_GenBank
Match: XP_004244120.1 (PREDICTED: ubiquitin thioesterase OTU1 [Solanum lycopersicum])

HSP 1 Score: 201.1 bits (510), Expect = 6.700e-48
Identity = 98/204 (48.04%), Postives = 137/204 (67.16%), Query Frame = 0 
Query:  203 MIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQL----KQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            ++RRV+ +DNSCLFNA+GY M++DR    +LR++IA  V + P+ Y++A LGK+ KEY DWI +P +WGG IEL +L+ +YG EI A +I++    +YG+GKNY  R+ ++YDG+HYDALAM+  +  APE  D T F    +GT   A  +A  L    +++R + D A FTLRC  C  G+ GQ+EA  HA AT H NF EY
Sbjct:    5 VVRRVIPSDNSCLFNAVGYVMDRDRNKAPELRQVIAGTVASDPEKYSDAFLGKSNKEYCDWILNPEKWGGAIELSILADHYGREIAAYDIQTTRCDLYGQGKNYEERVMLIYDGLHYDALAMSP-AEGAPEDFDQTIFSVQRDGTVGPAERLALNLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEY 207
The following BLAST results are available for this feature:
BLAST of NO04G03570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856008.11.100e-14370.39ubiquitin thioesterase OTU1, partial [Nannochlorop... [more]
EWM28713.11.500e-14370.39Ubiquitin-associated/translation elongation factor... [more]
CBJ33311.11.500e-6840.30OTU-like cysteine protease [Ectocarpus siliculosus... [more]
PRP86231.12.000e-5537.28C2H2-type zinc finger-containing protein [Planopro... [more]
XP_005642758.14.200e-5049.78OTU-domain-containing protein [Coccomyxa subellips... [more]
XP_001696776.11.800e-4849.75predicted protein, partial [Chlamydomonas reinhard... [more]
XP_005843374.12.300e-4848.77hypothetical protein CHLNCDRAFT_28255 [Chlorella v... [more]
XP_009399222.15.100e-4848.31PREDICTED: ubiquitin thioesterase OTU1 [Musa acumi... [more]
XP_015083052.15.100e-4848.04PREDICTED: ubiquitin thioesterase OTU1 [Solanum pe... [more]
XP_004244120.16.700e-4848.04PREDICTED: ubiquitin thioesterase OTU1 [Solanum ly... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009503NSK009503Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03570.1NO04G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579222gene_2136Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g33gene1896Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03570.1NO04G03570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03570 ID=NO04G03570|Name=NO04G03570|organism=Nannochloropsis oceanica|type=gene|length=1662bp
ATGGCTGTATGTCTTAGTCGCGTGCTGTgtgagttagattgctcgcaatt
gtgggaggaaaaggaaaggaaacatttcgccgcacgccatcaataataat
tagggggtgtgttcaactccgcgccgtaaatagcagccactcttacataa
ttatttaagagctctatcgcccgcaaaaaacttgaatgcgctttaagctt
tcaagcgtttcacccacgcgccgcctaccccatttttacttcacaaacga
ccacacgcacatggaactcacagcgatctcgatgagaacgtggttgtatc
tctgagGTCCACGCTCGACATACAATgtgagtccacaaatgagagcgcac
ccacacacagtcaaagctatgctcattcccattgcattccaccacagACA
CAGATACAGACATACACACACACACACAGCAGCAGCAGCAGCAACAGCAG
CAGTAGCAACAGCATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGCA
AGAGCGTCGTGCTTAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACTC
AAGGACAAAGTACAGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGCT
TAGGGCCAGCTTCCCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCCT
TGGTGACGGCCTTGGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCGG
GAGGCGGCAAATGAGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTAC
CTCGGCAGTGCGACAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCTG
CCAAGGCGCTGGAAATGGCACACAACGACGTTGGGGGTGCATTGGAGCTT
TGCATTGGTGGGGTAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCCC
GCCTCCTTCTGTGCCGGTATCGACTCATGGGGGGATGAGCACCGCGAATC
GGGTGATGATTCGGCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAAT
GCCATTGGGTATTGCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCAG
GAGGATTATTGCTGATTGTGTGAGGAACCGCCCGGACGTGTATACTGAGG
CAACGCTGGGCAAGACGCCGAAGGAGTACTCGGATTGGATTCAGgtagga
tgcgcgccagggaggtagggagggggaaagaggaaagtggataaaggaag
taacgggactcaattttacctgtctttttcctgtcacatttctgtcagGA
CCCAACGCAATGGGGAGGAGAAATCGAGCTCTTTGTCCTCTCTCAGTACT
ACGGCTGCGAAATTGTGGCGGTGGAGATCAAGAGCGTCCATGCCTATGTG
TATGGGGAAGGGAAGAATTACTCAAGGCGGATCTATGTGTTATATGATGG
GGTGCATTATGATGCCCTTGCCATGGCTGCGGGCTCGCCCACCGCGCCTG
AGTCGCTCGACATGACTCAGTTTCCTGCCGGCGACGAGGGGACGAAGGAC
GCAGCGTTGGCGGTGGCGGCCCAATTGAAGCAGGAGAGGCAATTTGTTGA
TATGGCTGGGTTTACGTTGAGATGCTTAACGTGTATGAAGGGACTTTCAG
GGCAGGAGGAGGCGAAAGCCCATGCCGCGGCGACACGACATCAAAATTTC
GGGGAGTACTAG
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protein sequence of NO04G03570.1

>NO04G03570.1-protein ID=NO04G03570.1-protein|Name=NO04G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MAVCLSRVLCPRSTYNTQIQTYTHTHSSSSSNSSSSNSMPLTLKINGPEG
KSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETA
LVTALGIQSGSAITVVREAANESASVAAAAVTITSAVRQLMDMGFPAAVA
AKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTAN
RVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTE
ATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVY
GEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDA
ALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFG
EY*
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Synonyms
Publications