NO04G03240, NO04G03240 (gene) Nannochloropsis oceanica

Overview
NameNO04G03240
Unique NameNO04G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr4:902298..904425 +

Link to JBrowse

Properties
Property NameValue
DescriptionFe-S cluster assembly factor HCF101, chloroplastic
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:902298..904425 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR027417P-loop_NTPase
IPR010376DUF971
IPR002744DUF59
IPR033756YlxH/NBP35
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
BLAST of NO04G03240 vs. NCBI_GenBank
Match: EWM28719.1 (protein of unknown function, DUF971 [Nannochloropsis gaditana])

HSP 1 Score: 835.9 bits (2158), Expect = 8.500e-239
Identity = 441/605 (72.89%), Postives = 516/605 (85.29%), Query Frame = 0
Query:   41 SSTRRPQVSSFLPPSRRGPSASR---SSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAG-LVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMH---GYSDTGGAEA-VAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGYD--KDMKPAKE 636
            SS+ +P   +  P  R  PS S+   +S   H  LP   +SA+++  +  +SS + SS+++N+ QV+TQLR+VMDPDLGSDVVTLGFIKNLT+ G TG V FVLELTTPACPVKDDLKAQA++VVE LPWV+KA+VILS+RPI A++ A  ++KATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGA+VGILDADIYGPSLPTMV PDTE+VEFVESQIRPM++ TG+DA GQPKGVKLMSFGYVNPGAAA+MRGPMVIQLINQLLTLTSWGELDYL++DMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYAD SALD   SR   D   +    G+  W+RLRQ+IE+V++  +  +T  G +VD+L+  V RRL+ DR+ARPLFG+GHRQRLADMWGL NTVSLPVLEEVS+SGDSG PL++ +P+S+ AQ+FMDLAGRVVREVAKLR+DRSRLRPS+TYLP EH+IAV +H   G +D G  E+ ++PPQK++PAALRRQCRCAMCVEEMTGRQ+L+PE + E+IKPVEIGAVGNYA+GITWTDGHKSLFPYRSFVDGYD   D K ++E
Sbjct:   40 SSSNKP---TSTPLYRYAPSVSQLFIASTPFHEKLP--IVSADRNLAE--TSSVITSSSEKNIAQVVTQLRQVMDPDLGSDVVTLGFIKNLTIDGATGRVSFVLELTTPACPVKDDLKAQAMQVVETLPWVTKADVILSARPITAEKSAGGDMKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGAKVGILDADIYGPSLPTMVAPDTEMVEFVESQIRPMIRQTGLDAEGQPKGVKLMSFGYVNPGAAAVMRGPMVIQLINQLLTLTSWGELDYLVIDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADVSALDYVDSR--EDMNRNGGVAGA--WQRLRQDIEDVLEDEDGIRTGKGAVVDDLITVVQRRLREDRIARPLFGQGHRQRLADMWGLDNTVSLPVLEEVSKSGDSGTPLLVSEPDSSSAQIFMDLAGRVVREVAKLRYDRSRLRPSVTYLPVEHVIAVTLHGAAGLTDDGRMESDISPPQKIAPAALRRQCRCAMCVEEMTGRQLLQPETIAEDIKPVEIGAVGNYAIGITWTDGHKSLFPYRSFVDGYDTRSDRKASEE 633          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: CBJ25905.1 (HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding [Ectocarpus siliculosus])

HSP 1 Score: 500.4 bits (1287), Expect = 8.500e-138
Identity = 287/573 (50.09%), Postives = 370/573 (64.57%), Query Frame = 0
Query:   68 THTPLPYATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGS---VRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADA-----------SALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGY 627
            T  P+     S   S +   +S       DE    V+  L  VMDPDL  D+V+LGFIK L ++GE      V F +ELTTPACPVK   +     +VE LPWV +AEV ++++P+   R  S  +  TGLS V  +IAVSSCKGGVGKSTTAVNLAFALD+QGA+VGILDADIYGPSLPTMV PD E VEFV +QIRPM             GVKLMS+G+VN G AAIMRGPMV QL++Q +TLTSWGELDYL++DMPPGTGDI LTLCQ LNITAAVIVTTPQ+LSFTDVVKG+D+FDTVNVP VAVVENMAY DA           S ++D  +    +   +A+  G                 A   + +  L   ++A V+++  + +    +FG+GH+ RLADMWG+TNT+ +P++ +V+ SGDSG+P V+ +P+S  ++ +  LA  VVREVAKL+   +  RP +++ P E  + +      +T G +     Q M+ A LRRQCRCA+CVEE +G+ +L P  VPE I P E   +GNYAV + W DGH SL+PY++F  GY
Sbjct:   49 TSLPVQQRARSYHVSMMTETTSDTPPGRKDE----VLAVLSAVMDPDLSMDIVSLGFIKELEISGEDEGRQVVTFDVELTTPACPVKAQFQQDCRDLVEALPWVDRAEVTMTAQPV---RDVSDTV-PTGLSKVATIIAVSSCKGGVGKSTTAVNLAFALDKQGAKVGILDADIYGPSLPTMVKPDREEVEFVGNQIRPMT----------AHGVKLMSYGFVNQG-AAIMRGPMVSQLLSQFVTLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYDAVDQTVFKTGLESNIEDLLTLDGDELSAAAAREG----------------LASPPQDETALRAAVIAEVMKKRASTKQREYIFGKGHQMRLADMWGITNTIRMPLVADVASSGDSGIPFVVSKPDSDHSESYSQLAEAVVREVAKLKFSDND-RPMLSFQPAEGTVTI------ETSGGK-----QVMAAADLRRQCRCALCVEEFSGKPLLDPASVPENIVPTEFAPIGNYAVSVKWDDGHSSLYPYKNFAMGY 574          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: CEL99255.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 470.3 bits (1209), Expect = 9.400e-129
Identity = 273/581 (46.99%), Postives = 351/581 (60.41%), Query Frame = 0
Query:   86 SVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKAT-------GLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVE-----SQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVAR----PLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLV--------------LGQPNSAPAQVFMDLAGRVVREVAKLRH-DRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKE 636
            S  +  V    DE   + +  L+ V+DPDLG D+VTLGF+K LT+   TG+V   +ELTTPACP+KD  +      +E LPWV+  ++  +S+PI   RP+  ++          G S V  +IAVSSCKGGVGKSTTAVNLAFAL   GA+VGILDAD++GPSLPTMV P   VV   E      Q   ++K    D      GVKLMSFG++NP  AA+MRGPMV  L+ Q +  T WGELDYL++DMPPGTGDI LTLCQSL+ITAAVIVTTPQRL+FTDVVKG+DMFDTVNVPCVAVVENMA+     +D    R A D   + S           Q++ + +    +     G  + +   V R L++  V R     LFG+GHRQRL+DMWG+ N  SLP+L  +SR+ DSG P V              +G         + ++A  VV+EVAKL+   R + RP++ YL E + + V   G               + PA LRR+CRCA CVEE TGRQ+L P  V E+I+P  +  VGNYA+G+ W+DGHKS++PYR+FV GY      A E
Sbjct:   74 SDEAPGVGGGVDERRVECLKSLKGVIDPDLGQDIVTLGFVKGLTIDESTGNVAMTVELTTPACPMKDQFRESITSALEVLPWVNGVDITFTSQPI-GTRPSPLSLDGQRQQHAPGGTSRVRAIIAVSSCKGGVGKSTTAVNLAFALKHMGAKVGILDADVHGPSLPTMVRPSEPVVTIEEVPAEDGQTVQILKPIDHD------GVKLMSFGFINP-MAAVMRGPMVTNLLKQFVGYTDWGELDYLVVDMPPGTGDIQLTLCQSLDITAAVIVTTPQRLAFTDVVKGIDMFDTVNVPCVAVVENMAHLTTDDID--TDRLARDIAAATSMTD--------QQLRDQLSIQNEDGESVGREELVRRCVDRALRSPDVRRRKRMQLFGKGHRQRLSDMWGIDNAFSLPLLPSISRASDSGTPFVDTDSDXXXXXXXXGIGPAEREAKDTYKNIAQSVVQEVAKLQSLSRDKRRPAVLYLSEGNELVVAWQGQQTA-----------IPPAGLRRKCRCAACVEEGTGRQLLDPSSVSEDIRPTRLEPVGNYALGVDWSDGHKSIYPYRAFVPGYTSRRDTAYE 625          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_002186426.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >ACI65896.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 452.6 bits (1163), Expect = 2.000e-123
Identity = 251/520 (48.27%), Postives = 328/520 (63.08%), Query Frame = 0
Query:  102 QVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKAT-GLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYR 621
            +V++ L+ V+DPDLGSD+VTLGF++NL + G    V F +ELTTPACPVK+  +    ++V+ LPW +  +V ++++P       S    AT G+S V  VIAVSSCKGGVGKSTTAVNLAF+L R GA VGI DAD+YGPSLPTM+ P  + V FV  Q+ P+          Q  GV+LMSFGYVN G +A+MRGPMV QL++Q L++T WG LDYLILDMPPGTGDI LTL Q LNITAAVIVTTPQ LSF DVV+GV+MFDTVNVPC+AVVENMAY +           ++DP+                                            ++Q       +FG GHR RL+  WG+ ++ S+P+L +++ +GD+G P VL  P+S PA+++ +LA  VV EVAK +  +S +RPS+ Y  E H++ V  +G   T        P    PA LRR CRCA CVEE+TGRQIL P  V ++I P  +   GNYA+ + W+DGH+SL+PYR
Sbjct:    1 EVLSTLKSVIDPDLGSDIVTLGFVQNLKLDGR--DVSFDVELTTPACPVKEQFQLDCQQLVQDLPWTNNIQVTMTAQP-------SVQETATLGMSQVGAVIAVSSCKGGVGKSTTAVNLAFSLQRLGATVGIFDADVYGPSLPTMITPQDDTVRFVGRQVAPL----------QRNGVRLMSFGYVNDG-SAVMRGPMVTQLLDQFLSVTHWGALDYLILDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCIAVVENMAYYE-----------SADPE--------------------------------------------KIQ-------IFGAGHRDRLSQQWGIEHSFSIPLLNKIAANGDNGTPFVLEFPDSPPAKIYQELASAVVSEVAKTKFAKS-MRPSVQYDAESHLLQVSQNGVGSTDEEHVATLP----PAELRRACRCAACVEELTGRQILVPSSVSDKIAPRNMVPTGNYALSVDWSDGHRSLYPYR 433          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: OEU07846.1 (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 436.4 bits (1121), Expect = 1.500e-118
Identity = 269/627 (42.90%), Postives = 367/627 (58.53%), Query Frame = 0
Query:   10 FVPTIIIIVLALLLGAVLQCRAFTPPQQAPMSSTRRPQVSSFLPPSRRGPSASRSSVLTHTPLP-YATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKE 636
            ++P I++ +L+ L    + C AF   +     +T  P  +S +  +++ P     S+    PL   A  +   + VD+ SS +V    D    +V+  LR V+DPDL  D+VTLGF++N+     T S+ F +ELTTPA  +K+  K    ++V  LP++   +V ++     A  P +    + G+S V  VIAVSSCKGGVGKSTT+VNLA+AL   GA VGI DAD+YGPSLPTMV PD ++V FV  QI P+          Q  GVKLMSFGY+N G +A+MRGPMV QL++Q L++T WG LDYLILDMPPGTGDI LTL Q LNITAAVIVTTPQ LSF DVV+GV+MFDTVNVPCVAVVENMAY +            SDP                      IK                               +FG GH++RL++ WG+ +  S+P+ ++++ +GDSG P VLG P+S  A+++ +LA  VV EV+K ++  S  RP I Y+ E ++I      + D          + ++P  LR  CRCA CVEE+TGRQIL+P DVPE IKP+++ + GNYA+ + W+DGHKSL+PYR  +     ++ P  E
Sbjct:    5 YLPRILLSILS-LAHLFVDCGAFI-SRPTTTRTTFTPATTSKICQNQQSP----ISLFQLRPLSCSAVTNNNDNNVDAQSSDSVPVPTDWR-DEVLQTLRAVIDPDLNEDIVTLGFVQNIAFDESTRSISFDVELTTPAHAMKETFKIDCEKLVLGLPFIDSVDVTMT-----AQAPINTETDSEGMSQVGAVIAVSSCKGGVGKSTTSVNLAYALQSLGASVGIFDADVYGPSLPTMVEPDDDIVRFVGRQISPL----------QRNGVKLMSFGYINEG-SAVMRGPMVSQLLDQFLSVTQWGSLDYLILDMPPGTGDIQLTLTQRLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCVAVVENMAYYE------------SDP----------------------IK-------------------------------IFGDGHKRRLSEQWGIEHMYSMPLTDQIATNGDSGTPFVLGHPDSPQAKIYRELATSVVSEVSKAKY--SSRRPEINYIEEFNIIQ-----FDD----------EPLAPTELRGACRCAACVEELTGRQILKPSDVPESIKPLQMSSTGNYALSVNWSDGHKSLYPYRQ-IKSLISELSPENE 525          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_002293925.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88934.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 431.8 bits (1109), Expect = 3.700e-117
Identity = 244/521 (46.83%), Postives = 322/521 (61.80%), Query Frame = 0
Query:  101 TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSR-LRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYR 621
            +Q++  L  + DPDL +D+V+LGF++NL +   +  V   LELTTPACPVKD    Q   ++  L W   A+V L+S+P  A  P+ A +   G+S +  VIAVSSCKGGVGKSTTAVNLAFAL+  GA+VGI DAD+YGPSLPTMV P+ + V FV  QI P+          +   V LMSFGYVN G +AIMRGPMV QL++Q L+LT+WG LDYLI+DMPPGTGDI LTL Q LNITAAVIVTTPQ LSF DV +GV+MFDTVNVPC+AVVENMAY                               L +E  E+I+                               +FG GH++RL++ WG+ +T S+P++ +++++GDSG P +L  P S  A ++  LA  VV EVAK++    +  RPS++Y  E+ ++ V      D G  +       +SPA LRR CRCA CVEE+TG+QIL P  + E +KP+ +   GNYA+ + W+DGH+SL+PYR
Sbjct:    2 SQILAALSVINDPDLNADIVSLGFVQNLKIDESSNIVSLDLELTTPACPVKDLFVQQCQDIINGLAWTRGADVTLTSQPTAA--PSDAPL---GMSQIGAVIAVSSCKGGVGKSTTAVNLAFALESLGAKVGIFDADVYGPSLPTMVTPEDDNVRFVGRQIAPL----------RRGDVSLMSFGYVNEG-SAIMRGPMVTQLLDQFLSLTNWGALDYLIMDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFVDVERGVEMFDTVNVPCIAVVENMAY-------------------------------LEREETEMIR-------------------------------IFGPGHKRRLSEQWGIEHTYSVPLMGQIAQNGDSGTPFILDNPKSPQADIYRQLAKSVVSEVAKIKFCTGKGGRPSVSYDVEKSILRV------DDGDIQNAT----ISPAELRRGCRCAACVEELTGKQILNPASISESVKPLNMSPTGNYALSVDWSDGHRSLYPYR 434          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: GAX18062.1 (hypothetical protein FisN_25Hh037 [Fistulifera solaris])

HSP 1 Score: 428.7 bits (1101), Expect = 3.100e-116
Identity = 235/519 (45.28%), Postives = 321/519 (61.85%), Query Frame = 0
Query:  103 VITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRS 622
            V+++L+++ DPDL  D+VT GF +NL        +   LELTTPACPVKD  +    +++ +LPW+ + EV L+     A    +++    GL+ V  ++AVSSCKGGVGKSTTAVNLAF+L + GA VGILD D+YGPSLPTMV PD ++V FV  QI P+          Q  GV+L+SFG+++   AA+MRG MV QL+ Q L +  WG+LDYLILDMPPGTGDIPLTL Q LN+TAAVIVTTP  LSF DV KG++MFDTV VPC+AVVENMA+ +                             L + ++E +  A    +     +++   V + LQ      P+FG GHR  L  M+G+     +P++++V+  GD G P VL QP+S+ A+V+  LA  VV+EVAK+++     R  + Y  +EH++A+K       G +        +SPA +RR CRCA CVEE+TGRQIL P  V E I P+ + +VGNYA  I W+DGH+SL+P +S
Sbjct:   68 VLSKLKQIQDPDLNVDIVTAGFCQNLQYDPANAKLSMDLELTTPACPVKDQFQRDCEQLLLELPWIQQVEVTLT-----AQAQGTSSTSLAGLAQVGAIVAVSSCKGGVGKSTTAVNLAFSLQQLGATVGILDTDLYGPSLPTMVTPDDDIVRFVGRQIAPL----------QRNGVRLLSFGHIH-DQAAVMRGAMVTQLLEQFLDVCQWGKLDYLILDMPPGTGDIPLTLTQKLNLTAAVIVTTPTELSFQDVKKGIEMFDTVQVPCIAVVENMAHYE-----------------------------LPESMKETVAKAVKQSSHVTNAEQVTQEVWKALQ--NTPLPIFGAGHRSTLQQMYGIEQHFKVPLMDQVAYEGDHGTPFVLQQPDSSAARVYRSLAQAVVQEVAKVKYTHPNQRLFLEYNRDEHVVALKQ------GTSPQDEEISTLSPATIRRACRCAACVEELTGRQILLPSMVSENIAPLRMQSVGNYAWSIDWSDGHRSLYPEKS 533          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: GAX14769.1 (hypothetical protein FisN_25Lh037 [Fistulifera solaris])

HSP 1 Score: 427.2 bits (1097), Expect = 9.100e-116
Identity = 249/586 (42.49%), Postives = 346/586 (59.04%), Query Frame = 0
Query:   73 PYATLSAEQSPVDSVSSSAV-----------------ASSNDENLTQ----VITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSF-VDGYDKDMKPAKES 637
            P ATLS    P+   +S+ +                 +S+N E  T+    V+++L+++ DPDL  D+VT GF +NL        +   LELTTPACPVKD  +    +++ +LPW+ + EV L+++P       +++   TGL+ V  ++AVSSCKGGVGKSTTAVNLAF+L + GA VGILD D+YGPSLPTMV PD ++V FV  QI P+          Q  GV+L+SFG+++   AA+MRG MV QL+ Q L +  WG+LDYLI+DMPPGTGDIPLTL Q LN+TAAVIVTTP  LSF DV KG++MFDTV VPC+AVVENMA+ +                             L + ++E +  A    +     +++   V + LQ      P+FG GHR  L  M+G+     +P++++V+  GD G P VL QP+S+  +V+  LA  VV+EVAK+++     R S+ Y  + H++A+K       G +        +SPA +RR CRCA CVEE+TGRQIL P  V E I P+ + +VGNYA  I W+DGH+SL+P +S    G  K     K+S
Sbjct:   17 PTATLSFAPQPISRSTSTTLSLSFFSALHTTTRLKDASSTNREIPTEWQGVVLSKLKQIQDPDLMVDIVTAGFCQNLKYDPINSKLSMDLELTTPACPVKDQFQRDCEQLLLELPWIQQVEVTLTAQP-----QGTSSTSLTGLAQVGAIVAVSSCKGGVGKSTTAVNLAFSLQQLGATVGILDTDLYGPSLPTMVTPDDDIVRFVGRQIAPL----------QRNGVRLLSFGHIH-DQAAVMRGAMVTQLLEQFLDVCQWGKLDYLIVDMPPGTGDIPLTLTQKLNLTAAVIVTTPTELSFQDVKKGIEMFDTVQVPCIAVVENMAHYE-----------------------------LPESMKETVAKAVQQSSYVTDAEQVTQEVWKALQ--NTPLPIFGAGHRSTLQQMYGIEQHFKVPLMDQVAYEGDHGTPFVLQQPDSSATRVYRSLAQAVVQEVAKVKYTHPNQRLSLEYNRDTHVVALKQ------GTSPQEEEISTLSPATIRRACRCAACVEELTGRQILLPSMVSENISPLRMQSVGNYAWSIDWSDGHRSLYPEKSLRALGSQKQKPTTKDS 549          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: OSX69602.1 (hypothetical protein BU14_1358s0001 [Porphyra umbilicalis])

HSP 1 Score: 426.4 bits (1095), Expect = 1.600e-115
Identity = 249/535 (46.54%), Postives = 317/535 (59.25%), Query Frame = 0
Query:   98 ENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETG-----SVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATG-LSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGY 627
            E   Q+   L+ V+DPDLG D+VTLGF++++             V F +ELTTPACPVK   +A  + +   LPWV+ A V ++     A  P +     TG L  V+ ++AV+SCKGGVGKSTTAVNLAF+L   GA VGI+DADIYGPSLPTMV PD+  VEFV+  I+P+            +GV+LMSFGYVN  ++AIMRGPMV  ++ QLLT T WGELDYL++D+PPGTGDI LTL Q +++TAAV VTTPQ LSF DVVKG+DMF  +NVP VAVVENMAY                                          A DT  Q                       LFGRGHR RL   +G+ N+ ++PV   +    DSGVP V+  P S  A ++  LAG VVREVAK++H      P ITY  + + I + + G    GG   V   Q++ PA LRR+CRCA C++E TG Q+LR EDV E IKPVE+  VGNYA+ ++WTDGH+S+FPY  FVD +
Sbjct:   82 ERKAQLRQVLKAVIDPDLGKDIVTLGFVQHIKSTPSAADPSAYDVAFDVELTTPACPVKAQFQADCVALATSLPWVATATVRMT-----AQAPQAVKRSTTGALDRVSAILAVASCKGGVGKSTTAVNLAFSLAAAGAAVGIMDADIYGPSLPTMVKPDSPTVEFVDGGIKPLT----------CRGVRLMSFGYVNE-SSAIMRGPMVANMLTQLLTTTQWGELDYLVIDLPPGTGDIQLTLSQVVSMTAAVHVTTPQLLSFVDVVKGLDMFTKLNVPSVAVVENMAYF----------------------------------------TAPDTGVQ---------------------YELFGRGHRHRLTAAFGIANSYAVPVNPSLCERSDSGVPYVVAFPESETAAIYTALAGAVVREVAKVQHG-GLSTPEITYDKDANEIVIVVGGRDGDGGGAPV--EQRLWPAELRRRCRCAQCIDEWTGEQVLRAEDVSESIKPVEMAPVGNYALQVSWTDGHQSIFPYARFVDAW 536          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_005711941.1 (unnamed protein product [Chondrus crispus] >CDF32276.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 419.1 bits (1076), Expect = 2.500e-113
Identity = 254/590 (43.05%), Postives = 342/590 (57.97%), Query Frame = 0
Query:   48 VSSFLPPSRRGPSASRSSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETG-----SVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGY--DKDM 631
            V+S   PSRR   A RS  +T  P           P   V  +   S++ +    +   L  V+DPDLG D+VTLGFIK++  +   G      V F +ELTTPACPVKD  K+   R+ E + +V KA VI+++ P  A+ P         L  +  ++AV+SCKGGVGKSTTAVNLAF+L  +GARVGI+DADIYGPSLPT+V P+   V+F + +IRP+          +  GVKLMSFGYVNP  +AIMRGPM+  ++NQLLT T WG LDYL++D+PPGTGD+ LTL Q +N+TAAVIVTTPQ+LSF DVVKG+DMFD V+VP VAVVENM+Y                                          A DT                      V   +FG+GH+QRL + +G+T++ S+P+  E+S   DSG+P V+  P S  +  +  LA  VV+EVAK+++    + P + +      I V+M     T         QK+ PA LRRQCRCA+CV+EMTG Q L P DV ++++P+++  VGNYA+ + W+DGH SL+PY  FV+ +   KDM
Sbjct:   20 VTSRTIPSRRQRCARRS--ITQFP---------TCPGRCVIQACSTSTDVDRKQALFKALSTVIDPDLGQDIVTLGFIKDVEFSEVPGLKGMYDVSFKVELTTPACPVKDIFKSDCKRLAEDISFVGKANVIMTAAPPSANVPTPTG----ALDNIGAIVAVASCKGGVGKSTTAVNLAFSLASRGARVGIMDADIYGPSLPTLVEPEERAVQFKDGRIRPL----------EAHGVKLMSFGYVNPD-SAIMRGPMIANVLNQLLTTTEWGVLDYLVIDLPPGTGDVQLTLSQIINMTAAVIVTTPQKLSFVDVVKGIDMFDKVSVPSVAVVENMSYF----------------------------------------VAPDT---------------------GVKHHIFGKGHQQRLIEQYGITDSFSMPIDPELSEKSDSGIPYVVANPKSMLSDEYQRLASAVVQEVAKIQYGGLGI-PDVQWDEASGNINVRMPNTETT---------QKIWPATLRRQCRCALCVDEMTGAQKLDPADVSDDVRPMKLAPVGNYALDVLWSDGHPSLYPYSRFVENWRNSKDM 512          
The following BLAST results are available for this feature:
BLAST of NO04G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28719.18.500e-23972.89protein of unknown function, DUF971 [Nannochlorops... [more]
CBJ25905.18.500e-13850.09HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP bi... [more]
CEL99255.19.400e-12946.99unnamed protein product [Vitrella brassicaformis C... [more]
XP_002186426.12.000e-12348.27predicted protein, partial [Phaeodactylum tricornu... [more]
OEU07846.11.500e-11842.90P-loop containing nucleoside triphosphate hydrolas... [more]
XP_002293925.13.700e-11746.83predicted protein, partial [Thalassiosira pseudona... [more]
GAX18062.13.100e-11645.28hypothetical protein FisN_25Hh037 [Fistulifera sol... [more]
GAX14769.19.100e-11642.49hypothetical protein FisN_25Lh037 [Fistulifera sol... [more]
OSX69602.11.600e-11546.54hypothetical protein BU14_1358s0001 [Porphyra umbi... [more]
XP_005711941.12.500e-11343.05unnamed protein product [Chondrus crispus] >CDF322... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009472NSK009472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03240.1NO04G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579071gene_2099Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g64gene1866Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03240.1NO04G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03240 ID=NO04G03240|Name=NO04G03240|organism=Nannochloropsis oceanica|type=gene|length=2128bp
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA
back to top

protein sequence of NO04G03240.1

>NO04G03240.1-protein ID=NO04G03240.1-protein|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MKAALRKKDFVPTIIIIVLALLLGAVLQCRAFTPPQQAPMSSTRRPQVSS
FLPPSRRGPSASRSSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENL
TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPV
KDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNN
VIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPD
TEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMV
IQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQ
RLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGS
ASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVA
RPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPA
QVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGA
EAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAV
GNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKESR*
back to top
Synonyms
Publications