NO04G02980, NO04G02980 (gene) Nannochloropsis oceanica

Overview
NameNO04G02980
Unique NameNO04G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1817
Alignment locationchr4:791092..792908 -

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Properties
Property NameValue
DescriptionPRA1 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:791092..792908 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_005854972.1 (rab acceptor 1 [Nannochloropsis gaditana CCMP526] >EKU21383.1 rab acceptor 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 275.0 bits (702), Expect = 2.000e-70
Identity = 138/218 (63.30%), Postives = 168/218 (77.06%), Query Frame = 0
Query:    1 MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSSSNGRD 219
            MTMRDVIGDFKTDML+SE+++F EKLNK GLKSPRPW EF    + PKNKQE+EERLQTNFMLY+ANYI+LL  IM WSVI+SPF+M VL VCAG FALLLGWP+PLE+ GR+LTP++K M+A+ F+F  LL TGAM  LIWSF  G+ + V HM+F+ R  GHR  +  + NLS      +EDIESP +ED  +NSYHSE A+LRA   + S +GRD
Sbjct:    1 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 218          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: EWM28820.1 (rab acceptor 1 [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 2.000e-70
Identity = 138/218 (63.30%), Postives = 168/218 (77.06%), Query Frame = 0
Query:    1 MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSSSNGRD 219
            MTMRDVIGDFKTDML+SE+++F EKLNK GLKSPRPW EF    + PKNKQE+EERLQTNFMLY+ANYI+LL  IM WSVI+SPF+M VL VCAG FALLLGWP+PLE+ GR+LTP++K M+A+ F+F  LL TGAM  LIWSF  G+ + V HM+F+ R  GHR  +  + NLS      +EDIESP +ED  +NSYHSE A+LRA   + S +GRD
Sbjct:   39 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_022748427.1 (PRA1 family protein B4-like [Durio zibethinus])

HSP 1 Score: 67.4 bits (163), Expect = 6.300e-8
Identity = 48/159 (30.19%), Postives = 81/159 (50.94%), Query Frame = 0
Query:    8 GDFKTDMLISEIKEFAEKLN---KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVL--LVCAGAFALLL-GWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159
            G+ +  +     + F   LN   +NGL   RPW E    S F  P++  E   R++ NF  YR NY+ ++G I+ +S++  PFS+ +L  L+C+  F  L     +PL + GR  + R+ + +   FS   +  T   +LLI + + G+ +   H AF+
Sbjct:   18 GESQPPVATPAFRSFISHLNDSLRNGLSQRRPWAELVDRSAFSKPESFSEATLRVRKNFSYYRVNYLSVIGLILAFSLLSHPFSLLLLLGLLCSWIFLYLFRPADQPLVIFGRTFSDRETLGILIIFSVFVVFLTNVGSLLISALMVGVGLVCAHGAFR 176          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: KVH94887.1 (hypothetical protein Ccrd_003046 [Cynara cardunculus var. scolymus])

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-7
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 0
Query:   24 EKLNKNGLKSPRPWQEFG--SGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159
            E LN +GL   RPW +    SGF  P++  +   R+Q N+  +R NY++++ A++ +S++ +PFS+  LL    A+  L  +     PL +LGR ++ R+ + V    S + +  T   ++LI + L GI +   H AF+
Sbjct:  102 ETLN-SGLSQRRPWSQLADRSGFSKPESVTDATTRIQKNYAYFRVNYLIVVAAVVGFSLLTNPFSLITLLGLLAAWLFLYLFRPSEPPLVILGRTISERETLGVLIVCSIVVIFLTSVGSILISALLAGIAIVCVHGAFR 240          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_018838962.1 (PREDICTED: PRA1 family protein B3 [Juglans regia])

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-7
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 0
Query:   28 KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159
            ++GL   RPW E    S    P +  E   R++ N   +R NY+ LL  ++  S++  PFS+AVLL   GA+A L  +    +PL VLGR  + R+ ++  S  + + +  T   +LLI + + G  +   H AF+
Sbjct:   37 RHGLSHRRPWSELVDRSSMARPDSLTEAYSRIRKNLSYFRVNYLTLLALVLALSLLSHPFSLAVLLSLFGAWAFLYVFRQSDQPLIVLGRTFSDRETLLGLSLLTVIVVFLTSVGSLLISALMIGFAIVCAHGAFR 172          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_021855397.1 (PRA1 family protein B4 [Spinacia oleracea] >KNA22403.1 hypothetical protein SOVF_034230 [Spinacia oleracea])

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0
Query:   28 KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVL--LVCAGAFALLL-GWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159
            K+G    RPW E    S F  P++  E   RL+ N+  +R NY+  L  ++ +S++  PFS+  L  L+ A +F  L     RPL +LGR  + R+ + +   FS + +L +   ++L+++F+ G  +   H AF+
Sbjct:   53 KDGYSQGRPWTELVDRSAFSKPESIAEATTRLRKNYSYFRVNYLAFLALVVGFSLVTHPFSLLALGILLAAWSFCFLFKPADRPLVILGRTYSDRETLGILVIFSVVMILISNVTSVLMYAFVLGAAIVSVHGAFR 188          
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_017618716.1 (PREDICTED: PRA1 family protein B4-like [Gossypium arboreum])

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 0
Query:   16 ISEIKEFAEKLN---KNGLKSPRPWQEFG--SGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---------PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159
            IS  + F  +LN   +N L   RPW E    S F  P++  +   R++ N+  +R NY++++G  + +S+I  PFS+ +LL       LL  W          +PL + GR  + R+ + +   FS   +  T   +L+I + + G  +   H AFK
Sbjct:   25 ISAFRAFLSRLNDSLRNSLSERRPWPELADRSTFSKPESFSDATLRIRKNYSYFRVNYLMVIGVTLAFSLIFHPFSLLLLL------GLLFSWIFLYLFRPADQPLIIFGRTFSDRETLGILVIFSIFVIFLTSVGSLIISAIMLGFGLVCAHGAFK 175          
The following BLAST results are available for this feature:
BLAST of NO04G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005854972.12.000e-7063.30rab acceptor 1 [Nannochloropsis gaditana CCMP526] ... [more]
EWM28820.12.000e-7063.30rab acceptor 1 [Nannochloropsis gaditana][more]
XP_022748427.16.300e-830.19PRA1 family protein B4-like [Durio zibethinus][more]
KVH94887.12.400e-731.43hypothetical protein Ccrd_003046 [Cynara carduncul... [more]
XP_018838962.13.100e-732.35PREDICTED: PRA1 family protein B3 [Juglans regia][more]
XP_021855397.17.000e-730.88PRA1 family protein B4 [Spinacia oleracea] >KNA224... [more]
XP_017618716.17.000e-728.66PREDICTED: PRA1 family protein B4-like [Gossypium ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009519NSK009519Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02980.2NO04G02980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02980.1NO04G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578935gene_2069Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g20gene1912Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02980.2NO04G02980.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02980.1NO04G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02980 ID=NO04G02980|Name=NO04G02980|organism=Nannochloropsis oceanica|type=gene|length=1817bp
ACAAATGATAGGACCGTCGATATCGTGCTATCTACCGTTGGAGACCTTAC
CTCGTCCATCTGCACTCGCGCTAGGCGTTTCCTCTACCCAACCCTAACCA
CCGCTGCTGTCGCGGCGTTGTGAGCAACAACGTGCCCCGCACACTCATCA
GAAACCATGACAATGCGGGATGTGATTGGAGATgtaagtgaatggagagg
cgggatgtgactggagatgtaagtggatgaggagaaatgaaatgtcattt
ttgtggattgagcgcagccctcaactcaaggccacgcaaatgagaaattt
agcatccgagaattttggtaagcttagtgcttgcttcatcaagaccgtca
ctagcacatgtatcattcgccggtgccctccgtaccccctgttgctccgc
acgcgcacgtccaagcaagtccttcaaacgccagtccacctgatacgacg
cgcgctaacatagctcaatcctacatcttacccaccacaaaaacagTTCA
AGACCGACATGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAAC
AAGAATGGGCTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTT
CAGGCCCCCCAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATT
TTATGCTTTACCGAGCCAATTATATTGTGTTGCTGGGGGCTATCATGATC
TGGTCTGTGATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGC
AGGAGCGTTTGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGG
GGAGGGTGTTGACGCCTAGAGATAAGATGATGGTCGCTAGTGGATgtaag
tttacaggggggataggtacaagaaaatgacggcagtctggtatcaaatc
tttcaatctcaaattttgttccaactccgctcgcagTCTCCTTCCTCTTT
CTCCTCGCCACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGG
CATAATGGTGGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCC
ATCGCAACAGCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATC
gtaagttcctgaacttttcctcatcttatgctttgccttataagttccgg
tctcccatactttgttttttttaatctgatgttcgcctgctgtcttttaa
gtatttcacagagattaccctatcttcctccattccatcctatccgggcg
tcattcattttaagacttatgcgcttcctctccctccaaacatacgaaca
cgaaaatacaaatcatccttcggcagGCTCTTGAAGACATCGAGTCTCCC
GGTCACGAGGATTGTGCCGTTAATTCGTACCATTCCGAGAACGCCAAGCT
TCGGGCCAATACCTGCACCAGCTCGAGTAACGGTCGAGACTAGAATCCTT
TTCTTCTCTTACTCCTTCTCGCGCATACGTTCTGATTCAAAATGTGACAC
AAAAACAAGAAAGTGAAAGCAAGAAAGGAGAGACGGAGACAGACACAGAA
ACAGAAAAACGGAGAGGGGAAGGGAGAGATGGTGTATATATACATGTATA
ACACTTCTCTCTCTGCATATATATGTATGCTGGACTGTCCGGAATGTCTG
AGTGAGTGTTTATATGTGTCCTTTCATGCTATTGTATTCTGGATGCTTGT
GTGGAGTAAAGTAAGGCATGGTGTGCAAGCATGTGCGAAGTAGTTAGTAG
TGAAGACGTCTGTATGACATTGATACGGTAAGAAGCAAAGGAAATTATAT
ACTTTACATAGTACCCC
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protein sequence of NO04G02980.2

>NO04G02980.2-protein ID=NO04G02980.2-protein|Name=NO04G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFML
YRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRV
LTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPG
HRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSS
SNGRD*
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protein sequence of NO04G02980.1

>NO04G02980.1-protein ID=NO04G02980.1-protein|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNK
QEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALL
LGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMV
AVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHS
ENAKLRANTCTSSSNGRD*
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Synonyms
Publications