NO04G02980, NO04G02980 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_005854972.1 (rab acceptor 1 [Nannochloropsis gaditana CCMP526] >EKU21383.1 rab acceptor 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 275.0 bits (702), Expect = 2.000e-70 Identity = 138/218 (63.30%), Postives = 168/218 (77.06%), Query Frame = 0 Query: 1 MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSSSNGRD 219 MTMRDVIGDFKTDML+SE+++F EKLNK GLKSPRPW EF + PKNKQE+EERLQTNFMLY+ANYI+LL IM WSVI+SPF+M VL VCAG FALLLGWP+PLE+ GR+LTP++K M+A+ F+F LL TGAM LIWSF G+ + V HM+F+ R GHR + + NLS +EDIESP +ED +NSYHSE A+LRA + S +GRD Sbjct: 1 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 218
BLAST of NO04G02980 vs. NCBI_GenBank
Match: EWM28820.1 (rab acceptor 1 [Nannochloropsis gaditana]) HSP 1 Score: 275.0 bits (702), Expect = 2.000e-70 Identity = 138/218 (63.30%), Postives = 168/218 (77.06%), Query Frame = 0 Query: 1 MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSSSNGRD 219 MTMRDVIGDFKTDML+SE+++F EKLNK GLKSPRPW EF + PKNKQE+EERLQTNFMLY+ANYI+LL IM WSVI+SPF+M VL VCAG FALLLGWP+PLE+ GR+LTP++K M+A+ F+F LL TGAM LIWSF G+ + V HM+F+ R GHR + + NLS +EDIESP +ED +NSYHSE A+LRA + S +GRD Sbjct: 39 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_022748427.1 (PRA1 family protein B4-like [Durio zibethinus]) HSP 1 Score: 67.4 bits (163), Expect = 6.300e-8 Identity = 48/159 (30.19%), Postives = 81/159 (50.94%), Query Frame = 0 Query: 8 GDFKTDMLISEIKEFAEKLN---KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVL--LVCAGAFALLL-GWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159 G+ + + + F LN +NGL RPW E S F P++ E R++ NF YR NY+ ++G I+ +S++ PFS+ +L L+C+ F L +PL + GR + R+ + + FS + T +LLI + + G+ + H AF+ Sbjct: 18 GESQPPVATPAFRSFISHLNDSLRNGLSQRRPWAELVDRSAFSKPESFSEATLRVRKNFSYYRVNYLSVIGLILAFSLLSHPFSLLLLLGLLCSWIFLYLFRPADQPLVIFGRTFSDRETLGILIIFSVFVVFLTNVGSLLISALMVGVGLVCAHGAFR 176
BLAST of NO04G02980 vs. NCBI_GenBank
Match: KVH94887.1 (hypothetical protein Ccrd_003046 [Cynara cardunculus var. scolymus]) HSP 1 Score: 65.5 bits (158), Expect = 2.400e-7 Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 0 Query: 24 EKLNKNGLKSPRPWQEFG--SGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159 E LN +GL RPW + SGF P++ + R+Q N+ +R NY++++ A++ +S++ +PFS+ LL A+ L + PL +LGR ++ R+ + V S + + T ++LI + L GI + H AF+ Sbjct: 102 ETLN-SGLSQRRPWSQLADRSGFSKPESVTDATTRIQKNYAYFRVNYLIVVAAVVGFSLLTNPFSLITLLGLLAAWLFLYLFRPSEPPLVILGRTISERETLGVLIVCSIVVIFLTSVGSILISALLAGIAIVCVHGAFR 240
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_018838962.1 (PREDICTED: PRA1 family protein B3 [Juglans regia]) HSP 1 Score: 65.1 bits (157), Expect = 3.100e-7 Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 0 Query: 28 KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159 ++GL RPW E S P + E R++ N +R NY+ LL ++ S++ PFS+AVLL GA+A L + +PL VLGR + R+ ++ S + + + T +LLI + + G + H AF+ Sbjct: 37 RHGLSHRRPWSELVDRSSMARPDSLTEAYSRIRKNLSYFRVNYLTLLALVLALSLLSHPFSLAVLLSLFGAWAFLYVFRQSDQPLIVLGRTFSDRETLLGLSLLTVIVVFLTSVGSLLISALMIGFAIVCAHGAFR 172
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_021855397.1 (PRA1 family protein B4 [Spinacia oleracea] >KNA22403.1 hypothetical protein SOVF_034230 [Spinacia oleracea]) HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7 Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0 Query: 28 KNGLKSPRPWQEF--GSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVL--LVCAGAFALLL-GWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159 K+G RPW E S F P++ E RL+ N+ +R NY+ L ++ +S++ PFS+ L L+ A +F L RPL +LGR + R+ + + FS + +L + ++L+++F+ G + H AF+ Sbjct: 53 KDGYSQGRPWTELVDRSAFSKPESIAEATTRLRKNYSYFRVNYLAFLALVVGFSLVTHPFSLLALGILLAAWSFCFLFKPADRPLVILGRTYSDRETLGILVIFSVVMILISNVTSVLMYAFVLGAAIVSVHGAFR 188
BLAST of NO04G02980 vs. NCBI_GenBank
Match: XP_017618716.1 (PREDICTED: PRA1 family protein B4-like [Gossypium arboreum]) HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7 Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 0 Query: 16 ISEIKEFAEKLN---KNGLKSPRPWQEFG--SGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGW---------PRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFK 159 IS + F +LN +N L RPW E S F P++ + R++ N+ +R NY++++G + +S+I PFS+ +LL LL W +PL + GR + R+ + + FS + T +L+I + + G + H AFK Sbjct: 25 ISAFRAFLSRLNDSLRNSLSERRPWPELADRSTFSKPESFSDATLRIRKNYSYFRVNYLMVIGVTLAFSLIFHPFSLLLLL------GLLFSWIFLYLFRPADQPLIIFGRTFSDRETLGILVIFSIFVIFLTSVGSLIISAIMLGFGLVCAHGAFK 175 The following BLAST results are available for this feature:
BLAST of NO04G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7 Position : 0 Zoom : x 1
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G02980 ID=NO04G02980|Name=NO04G02980|organism=Nannochloropsis oceanica|type=gene|length=1817bpback to top protein sequence of NO04G02980.2 >NO04G02980.2-protein ID=NO04G02980.2-protein|Name=NO04G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bpback to top protein sequence of NO04G02980.1 >NO04G02980.1-protein ID=NO04G02980.1-protein|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bpback to top Synonyms
Publications
|