NO04G02980.1, NO04G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02980.1
Unique NameNO04G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1187
Alignment locationchr4:791092..792908 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:791092..792908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02980.1 vs.
Match: EWM28820.1 (rab acceptor 1 [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 2.000e-70
Identity = 138/218 (63.30%), Postives = 168/218 (77.06%), Query Frame = 0 
Query:    1 MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNKQEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALLLGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMVAVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHSENAKLRANTCTSSSNGRD 219
            MTMRDVIGDFKTDML+SE+++F EKLNK GLKSPRPW EF    + PKNKQE+EERLQTNFMLY+ANYI+LL  IM WSVI+SPF+M VL VCAG FALLLGWP+PLE+ GR+LTP++K M+A+ F+F  LL TGAM  LIWSF  G+ + V HM+F+ R  GHR  +  + NLS      +EDIESP +ED  +NSYHSE A+LRA   + S +GRD
Sbjct:   39 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256
The following BLAST results are available for this feature:
BLAST of NO04G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28820.12.000e-7063.30rab acceptor 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02980NO04G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02980.1NO04G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02980.1.cds1NO04G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02980.1.cds2NO04G02980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02980.1.cds3NO04G02980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02980.1.cds4NO04G02980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02980.1 ID=NO04G02980.1|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp
ACAAATGATAGGACCGTCGATATCGTGCTATCTACCGTTGGAGACCTTAC
CTCGTCCATCTGCACTCGCGCTAGGCGTTTCCTCTACCCAACCCTAACCA
CCGCTGCTGTCGCGGCGTTGTGAGCAACAACGTGCCCCGCACACTCATCA
GAAACCATGACAATGCGGGATGTGATTGGAGATTTCAAGACCGACATGCT
TATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGGGCTGA
AGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCCCCAAG
AACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTTTACCG
AGCCAATTATATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGTGATTA
TGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGTTTGCC
TTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTGTTGAC
GCCTAGAGATAAGATGATGGTCGCTAGTGGATTCTCCTTCCTCTTTCTCC
TCGCCACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATA
ATGGTGGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCG
CAACAGCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCGCTC
TTGAAGACATCGAGTCTCCCGGTCACGAGGATTGTGCCGTTAATTCGTAC
CATTCCGAGAACGCCAAGCTTCGGGCCAATACCTGCACCAGCTCGAGTAA
CGGTCGAGACTAGAATCCTTTTCTTCTCTTACTCCTTCTCGCGCATACGT
TCTGATTCAAAATGTGACACAAAAACAAGAAAGTGAAAGCAAGAAAGGAG
AGACGGAGACAGACACAGAAACAGAAAAACGGAGAGGGGAAGGGAGAGAT
GGTGTATATATACATGTATAACACTTCTCTCTCTGCATATATATGTATGC
TGGACTGTCCGGAATGTCTGAGTGAGTGTTTATATGTGTCCTTTCATGCT
ATTGTATTCTGGATGCTTGTGTGGAGTAAAGTAAGGCATGGTGTGCAAGC
ATGTGCGAAGTAGTTAGTAGTGAAGACGTCTGTATGACATTGATACGGTA
AGAAGCAAAGGAAATTATATACTTTACATAGTACCCC
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protein sequence of NO04G02980.1

>NO04G02980.1-protein ID=NO04G02980.1-protein|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNK
QEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALL
LGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMV
AVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHS
ENAKLRANTCTSSSNGRD*
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mRNA from alignment at chr4:791092..792908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02980.1 ID=NO04G02980.1|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at chr4:791092..792908- (Nannochloropsis oceanica)
ACAAATGATAGGACCGTCGATATCGTGCTATCTACCGTTGGAGACCTTAC
CTCGTCCATCTGCACTCGCGCTAGGCGTTTCCTCTACCCAACCCTAACCA
CCGCTGCTGTCGCGGCGTTGTGAGCAACAACGTGCCCCGCACACTCATCA
GAAACCATGACAATGCGGGATGTGATTGGAGATGTAAGTGAATGGAGAGG
CGGGATGTGACTGGAGATGTAAGTGGATGAGGAGAAATGAAATGTCATTT
TTGTGGATTGAGCGCAGCCCTCAACTCAAGGCCACGCAAATGAGAAATTT
AGCATCCGAGAATTTTGGTAAGCTTAGTGCTTGCTTCATCAAGACCGTCA
CTAGCACATGTATCATTCGCCGGTGCCCTCCGTACCCCCTGTTGCTCCGC
ACGCGCACGTCCAAGCAAGTCCTTCAAACGCCAGTCCACCTGATACGACG
CGCGCTAACATAGCTCAATCCTACATCTTACCCACCACAAAAACAGTTCA
AGACCGACATGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAAC
AAGAATGGGCTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTT
CAGGCCCCCCAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATT
TTATGCTTTACCGAGCCAATTATATTGTGTTGCTGGGGGCTATCATGATC
TGGTCTGTGATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGC
AGGAGCGTTTGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGG
GGAGGGTGTTGACGCCTAGAGATAAGATGATGGTCGCTAGTGGATGTAAG
TTTACAGGGGGGATAGGTACAAGAAAATGACGGCAGTCTGGTATCAAATC
TTTCAATCTCAAATTTTGTTCCAACTCCGCTCGCAGTCTCCTTCCTCTTT
CTCCTCGCCACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGG
CATAATGGTGGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCC
ATCGCAACAGCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATC
GTAAGTTCCTGAACTTTTCCTCATCTTATGCTTTGCCTTATAAGTTCCGG
TCTCCCATACTTTGTTTTTTTTAATCTGATGTTCGCCTGCTGTCTTTTAA
GTATTTCACAGAGATTACCCTATCTTCCTCCATTCCATCCTATCCGGGCG
TCATTCATTTTAAGACTTATGCGCTTCCTCTCCCTCCAAACATACGAACA
CGAAAATACAAATCATCCTTCGGCAGGCTCTTGAAGACATCGAGTCTCCC
GGTCACGAGGATTGTGCCGTTAATTCGTACCATTCCGAGAACGCCAAGCT
TCGGGCCAATACCTGCACCAGCTCGAGTAACGGTCGAGACTAGAATCCTT
TTCTTCTCTTACTCCTTCTCGCGCATACGTTCTGATTCAAAATGTGACAC
AAAAACAAGAAAGTGAAAGCAAGAAAGGAGAGACGGAGACAGACACAGAA
ACAGAAAAACGGAGAGGGGAAGGGAGAGATGGTGTATATATACATGTATA
ACACTTCTCTCTCTGCATATATATGTATGCTGGACTGTCCGGAATGTCTG
AGTGAGTGTTTATATGTGTCCTTTCATGCTATTGTATTCTGGATGCTTGT
GTGGAGTAAAGTAAGGCATGGTGTGCAAGCATGTGCGAAGTAGTTAGTAG
TGAAGACGTCTGTATGACATTGATACGGTAAGAAGCAAAGGAAATTATAT
ACTTTACATAGTACCCC
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Coding sequence (CDS) from alignment at chr4:791092..792908-

>NO04G02980.1 ID=NO04G02980.1|Name=NO04G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr4:791092..792908- (Nannochloropsis oceanica)
ATGACAATGCGGGATGTGATTGGAGATTTCAAGACCGACATGCTTATCTC
AGAGATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGGGCTGAAGAGCC
CGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCCCCAAGAACAAG
CAGGAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTTTACCGAGCCAA
TTATATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGTGATTATGTCTC
CTTTTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGTTTGCCTTGCTG
CTAGGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTGTTGACGCCTAG
AGATAAGATGATGGTCGCTAGTGGATTCTCCTTCCTCTTTCTCCTCGCCA
CCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAATGGTG
GCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGCAACAG
CTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCGCTCTTGAAG
ACATCGAGTCTCCCGGTCACGAGGATTGTGCCGTTAATTCGTACCATTCC
GAGAACGCCAAGCTTCGGGCCAATACCTGCACCAGCTCGAGTAACGGTCG
AGACTAG
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Synonyms
Publications