NO04G02860, NO04G02860 (gene) Nannochloropsis oceanica

Overview
NameNO04G02860
Unique NameNO04G02860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1599
Alignment locationchr4:751663..753261 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibonuclease H-like domain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:751663..753261 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Homology
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BLAST of NO04G02860 vs. NCBI_GenBank
Match: XP_024577017.1 (Ribonuclease H-like domain [Plasmopara halstedii] >CEG40648.1 Ribonuclease H-like domain [Plasmopara halstedii])

HSP 1 Score: 63.9 bits (154), Expect = 9.800e-7
Identity = 56/201 (27.86%), Postives = 95/201 (47.26%), Query Frame = 0 
Query:   84 ATQYSELVYSWVVAVLSDFDISLDNDVFAIVSDGGSDVKCCASNPSFLNKPL-----EWCGAHMLNRAIAKALEYGADEGAGVQGEEEKRDDDAPAGGGAIRPSKSPPIKMEVIQAQLEIYGKQLALKNMAPNCWSSVVMVFERILESWTGTFRRLFLRSNAHINAPIKDQRKEMLEALAVLKPVNAVLTELQASDSSTGA 280
            A+  SE++YSWV+ VL++F + L +D+    SDGG D++        L+K L     EWC  H+ N A+ ++  YGA+      G  E R+            +KSP  K  VI              + AP+ + S+  V ER LE W    +  +    + ++ P+   ++E+ +  +++ PV A++ E Q     +GA
Sbjct:  183 ASGLSEVLYSWVIDVLAEFGL-LPSDIAGSTSDGGGDIR------RLLSKLLTAAFWEWCVPHLSNCALQES--YGANLDPSKIGNIECRETLQTMRSVIEHLNKSPQGKQPVI--------------SHAPHRFLSLTKVNERFLELWDPIDK--YYNERSKLSNPMLSLKEELRQLYSLIVPVGALMQETQGCSKPSGA 358
The following BLAST results are available for this feature:
BLAST of NO04G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024577017.19.800e-727.86Ribonuclease H-like domain [Plasmopara halstedii] ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02860.1NO04G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668778gene_2057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02860.1NO04G02860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02860 ID=NO04G02860|Name=NO04G02860|organism=Nannochloropsis oceanica|type=gene|length=1599bp
ATGGTCGTTGAGCTCTTCGCCGCTAGCAATAACAAGATAAAGTCTGAGAT
CACGGACACCTGGGCTGGTGGCATTCCCTTCCTTGACGCTCATGTAATGA
CATCTGGGAAGATAAAAAGAGCGGGCGCAAGTTCCTCGgtacgtgcatac
acgatacgcacttgcctatcgtttacagaggccacacctccacgattatg
tacgttcccaccacacaaagACTTTACCACACAGGCGTTCACGTGCGAAG
CGGTGGATTGACGCACAAGTCTCCCCGCGGCAGCATCTCATTGGCCTTAG
GCACCTGGCCCCGACCCCGGAGCTCTACGCGGCCACACAGTATTCGGAGC
TGGTGTACAGCTGGGTCGTGGCGGTGCTCTCCGACTTCGACATCAGCTTG
GACAACGACGTCTTTGCCATCGTGTCTGACGGGGGCAGCGACGTCAAGTG
CTGCGCATCAAACCCGAGCTTCCTCAACAAGCCCTTGGAgtaagtttcgc
gtacattggtgacggcaactttgaccacagattatctcacttctatattt
tatgcacacagATGGTGTGGAGCGCACATGCTGAACCGCGCGATCGCCAA
AGCCCTGGAATATGGGGCCGATGAGGGCGCGGGAGTCCAGGGGGAGGAGG
AGAAGAGGGACGATGACGCGCCGGCCGGTGGTGGGGCCATTCGgtctggc
cgcgacctgctccacttcattcgcaagatcgtcgtatctatctatctatc
accattacgagccttgtcatcggcataaagacatctccttctatcatatt
ttgagcaccaaaataagcccaccccgcatgacggggaagctgccggcatc
agtcccactcgttggcgcgggatgaccggcagccaaaggagcggcttgtt
tagagcgggatggcgtcatcgtcccgcgaaaatgccattagcctgatgcc
aacagcttccccgtcatgcggggcgggctgattttggtgctcaaaatatt
atagaaggagatgtctttatgccggtgacaaggctcgaaatggtgatcaa
aaccccaaaaaagtaaaaagagcaaaaaagttacataactttctgtacag
TCCGTCCAAATCACCCCCCATAAAGgtacgcagtatctgtacgttgacat
tttcattgatgtagtgtatcttttgtgtttgggcgagatgtagataccat
tatctcacacaataatacatttacaccgccaaccaacagATGGAGGTCAT
TCAGGCGCAGCTGGAGATTTATGGTAAGCAACTGGCGCTGAAGAATATGG
CGCCGAACTGCTGGTCTTCTGTTGTCATGGTTTTCGAGCGCATACTAGAG
TCTTGGACGGGTACATTCCGGAGGCTTTTCTTGCGCTCCAACGCCCACAT
CAACGCCCCAATCAAGGACCAGAGAAAGGAGATGCTAGAGGCCCTGGCGG
TGCTGAAGCCGGTCAACGCGGTCCTGACGGAGCTCCAGGCCTCGGACTCG
AGCACGGGAGCGCGGGTGCCCTTTCTCATTAACACCCTCCTCGCAACGAG
CCTGGACACGAAGCAGCCCCTGCGCGTGGAAGACCCCGAGGTGCCCTGA
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protein sequence of NO04G02860.1

>NO04G02860.1-protein ID=NO04G02860.1-protein|Name=NO04G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MVVELFAASNNKIKSEITDTWAGGIPFLDAHVMTSGKIKRAGASSSTLPH
RRSRAKRWIDAQVSPRQHLIGLRHLAPTPELYAATQYSELVYSWVVAVLS
DFDISLDNDVFAIVSDGGSDVKCCASNPSFLNKPLEWCGAHMLNRAIAKA
LEYGADEGAGVQGEEEKRDDDAPAGGGAIRPSKSPPIKMEVIQAQLEIYG
KQLALKNMAPNCWSSVVMVFERILESWTGTFRRLFLRSNAHINAPIKDQR
KEMLEALAVLKPVNAVLTELQASDSSTGARVPFLINTLLATSLDTKQPLR
VEDPEVP*
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Synonyms
Publications