NO04G02860.1, NO04G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02860.1
Unique NameNO04G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr4:751663..753261 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:751663..753261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02860.1 vs.
Match: XP_024577017.1 (Ribonuclease H-like domain [Plasmopara halstedii]; CEG40648.1 Ribonuclease H-like domain [Plasmopara halstedii])

HSP 1 Score: 63.9 bits (154), Expect = 9.800e-7
Identity = 56/201 (27.86%), Postives = 95/201 (47.26%), Query Frame = 0 
Query:   84 ATQYSELVYSWVVAVLSDFDISLDNDVFAIVSDGGSDVKCCASNPSFLNKPL-----EWCGAHMLNRAIAKALEYGADEGAGVQGEEEKRDDDAPAGGGAIRPSKSPPIKMEVIQAQLEIYGKQLALKNMAPNCWSSVVMVFERILESWTGTFRRLFLRSNAHINAPIKDQRKEMLEALAVLKPVNAVLTELQASDSSTGA 280
            A+  SE++YSWV+ VL++F + L +D+    SDGG D++        L+K L     EWC  H+ N A+ ++  YGA+      G  E R+            +KSP  K  VI              + AP+ + S+  V ER LE W    +  +    + ++ P+   ++E+ +  +++ PV A++ E Q     +GA
Sbjct:  183 ASGLSEVLYSWVIDVLAEFGL-LPSDIAGSTSDGGGDIR------RLLSKLLTAAFWEWCVPHLSNCALQES--YGANLDPSKIGNIECRETLQTMRSVIEHLNKSPQGKQPVI--------------SHAPHRFLSLTKVNERFLELWDPIDK--YYNERSKLSNPMLSLKEELRQLYSLIVPVGALMQETQGCSKPSGA 358
The following BLAST results are available for this feature:
BLAST of NO04G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024577017.19.800e-727.86Ribonuclease H-like domain [Plasmopara halstedii];... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02860NO04G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02860.1NO04G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02860.1.cds1NO04G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02860.1.cds2NO04G02860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02860.1.cds3NO04G02860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02860.1.cds4NO04G02860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02860.1.cds5NO04G02860.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02860.1 ID=NO04G02860.1|Name=NO04G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGGTCGTTGAGCTCTTCGCCGCTAGCAATAACAAGATAAAGTCTGAGAT
CACGGACACCTGGGCTGGTGGCATTCCCTTCCTTGACGCTCATGTAATGA
CATCTGGGAAGATAAAAAGAGCGGGCGCAAGTTCCTCGACTTTACCACAC
AGGCGTTCACGTGCGAAGCGGTGGATTGACGCACAAGTCTCCCCGCGGCA
GCATCTCATTGGCCTTAGGCACCTGGCCCCGACCCCGGAGCTCTACGCGG
CCACACAGTATTCGGAGCTGGTGTACAGCTGGGTCGTGGCGGTGCTCTCC
GACTTCGACATCAGCTTGGACAACGACGTCTTTGCCATCGTGTCTGACGG
GGGCAGCGACGTCAAGTGCTGCGCATCAAACCCGAGCTTCCTCAACAAGC
CCTTGGAATGGTGTGGAGCGCACATGCTGAACCGCGCGATCGCCAAAGCC
CTGGAATATGGGGCCGATGAGGGCGCGGGAGTCCAGGGGGAGGAGGAGAA
GAGGGACGATGACGCGCCGGCCGGTGGTGGGGCCATTCGTCCGTCCAAAT
CACCCCCCATAAAGATGGAGGTCATTCAGGCGCAGCTGGAGATTTATGGT
AAGCAACTGGCGCTGAAGAATATGGCGCCGAACTGCTGGTCTTCTGTTGT
CATGGTTTTCGAGCGCATACTAGAGTCTTGGACGGGTACATTCCGGAGGC
TTTTCTTGCGCTCCAACGCCCACATCAACGCCCCAATCAAGGACCAGAGA
AAGGAGATGCTAGAGGCCCTGGCGGTGCTGAAGCCGGTCAACGCGGTCCT
GACGGAGCTCCAGGCCTCGGACTCGAGCACGGGAGCGCGGGTGCCCTTTC
TCATTAACACCCTCCTCGCAACGAGCCTGGACACGAAGCAGCCCCTGCGC
GTGGAAGACCCCGAGGTGCCCTGA
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protein sequence of NO04G02860.1

>NO04G02860.1-protein ID=NO04G02860.1-protein|Name=NO04G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MVVELFAASNNKIKSEITDTWAGGIPFLDAHVMTSGKIKRAGASSSTLPH
RRSRAKRWIDAQVSPRQHLIGLRHLAPTPELYAATQYSELVYSWVVAVLS
DFDISLDNDVFAIVSDGGSDVKCCASNPSFLNKPLEWCGAHMLNRAIAKA
LEYGADEGAGVQGEEEKRDDDAPAGGGAIRPSKSPPIKMEVIQAQLEIYG
KQLALKNMAPNCWSSVVMVFERILESWTGTFRRLFLRSNAHINAPIKDQR
KEMLEALAVLKPVNAVLTELQASDSSTGARVPFLINTLLATSLDTKQPLR
VEDPEVP*
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mRNA from alignment at chr4:751663..753261+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02860.1 ID=NO04G02860.1|Name=NO04G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at chr4:751663..753261+ (Nannochloropsis oceanica)
ATGGTCGTTGAGCTCTTCGCCGCTAGCAATAACAAGATAAAGTCTGAGAT
CACGGACACCTGGGCTGGTGGCATTCCCTTCCTTGACGCTCATGTAATGA
CATCTGGGAAGATAAAAAGAGCGGGCGCAAGTTCCTCGGTACGTGCATAC
ACGATACGCACTTGCCTATCGTTTACAGAGGCCACACCTCCACGATTATG
TACGTTCCCACCACACAAAGACTTTACCACACAGGCGTTCACGTGCGAAG
CGGTGGATTGACGCACAAGTCTCCCCGCGGCAGCATCTCATTGGCCTTAG
GCACCTGGCCCCGACCCCGGAGCTCTACGCGGCCACACAGTATTCGGAGC
TGGTGTACAGCTGGGTCGTGGCGGTGCTCTCCGACTTCGACATCAGCTTG
GACAACGACGTCTTTGCCATCGTGTCTGACGGGGGCAGCGACGTCAAGTG
CTGCGCATCAAACCCGAGCTTCCTCAACAAGCCCTTGGAGTAAGTTTCGC
GTACATTGGTGACGGCAACTTTGACCACAGATTATCTCACTTCTATATTT
TATGCACACAGATGGTGTGGAGCGCACATGCTGAACCGCGCGATCGCCAA
AGCCCTGGAATATGGGGCCGATGAGGGCGCGGGAGTCCAGGGGGAGGAGG
AGAAGAGGGACGATGACGCGCCGGCCGGTGGTGGGGCCATTCGGTCTGGC
CGCGACCTGCTCCACTTCATTCGCAAGATCGTCGTATCTATCTATCTATC
ACCATTACGAGCCTTGTCATCGGCATAAAGACATCTCCTTCTATCATATT
TTGAGCACCAAAATAAGCCCACCCCGCATGACGGGGAAGCTGCCGGCATC
AGTCCCACTCGTTGGCGCGGGATGACCGGCAGCCAAAGGAGCGGCTTGTT
TAGAGCGGGATGGCGTCATCGTCCCGCGAAAATGCCATTAGCCTGATGCC
AACAGCTTCCCCGTCATGCGGGGCGGGCTGATTTTGGTGCTCAAAATATT
ATAGAAGGAGATGTCTTTATGCCGGTGACAAGGCTCGAAATGGTGATCAA
AACCCCAAAAAAGTAAAAAGAGCAAAAAAGTTACATAACTTTCTGTACAG
TCCGTCCAAATCACCCCCCATAAAGGTACGCAGTATCTGTACGTTGACAT
TTTCATTGATGTAGTGTATCTTTTGTGTTTGGGCGAGATGTAGATACCAT
TATCTCACACAATAATACATTTACACCGCCAACCAACAGATGGAGGTCAT
TCAGGCGCAGCTGGAGATTTATGGTAAGCAACTGGCGCTGAAGAATATGG
CGCCGAACTGCTGGTCTTCTGTTGTCATGGTTTTCGAGCGCATACTAGAG
TCTTGGACGGGTACATTCCGGAGGCTTTTCTTGCGCTCCAACGCCCACAT
CAACGCCCCAATCAAGGACCAGAGAAAGGAGATGCTAGAGGCCCTGGCGG
TGCTGAAGCCGGTCAACGCGGTCCTGACGGAGCTCCAGGCCTCGGACTCG
AGCACGGGAGCGCGGGTGCCCTTTCTCATTAACACCCTCCTCGCAACGAG
CCTGGACACGAAGCAGCCCCTGCGCGTGGAAGACCCCGAGGTGCCCTGA
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Coding sequence (CDS) from alignment at chr4:751663..753261+

>NO04G02860.1 ID=NO04G02860.1|Name=NO04G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr4:751663..753261+ (Nannochloropsis oceanica)
ATGGTCGTTGAGCTCTTCGCCGCTAGCAATAACAAGATAAAGTCTGAGAT
CACGGACACCTGGGCTGGTGGCATTCCCTTCCTTGACGCTCATGTAATGA
CATCTGGGAAGATAAAAAGAGCGGGCGCAAGTTCCTCGACTTTACCACAC
AGGCGTTCACGTGCGAAGCGGTGGATTGACGCACAAGTCTCCCCGCGGCA
GCATCTCATTGGCCTTAGGCACCTGGCCCCGACCCCGGAGCTCTACGCGG
CCACACAGTATTCGGAGCTGGTGTACAGCTGGGTCGTGGCGGTGCTCTCC
GACTTCGACATCAGCTTGGACAACGACGTCTTTGCCATCGTGTCTGACGG
GGGCAGCGACGTCAAGTGCTGCGCATCAAACCCGAGCTTCCTCAACAAGC
CCTTGGAATGGTGTGGAGCGCACATGCTGAACCGCGCGATCGCCAAAGCC
CTGGAATATGGGGCCGATGAGGGCGCGGGAGTCCAGGGGGAGGAGGAGAA
GAGGGACGATGACGCGCCGGCCGGTGGTGGGGCCATTCGTCCGTCCAAAT
CACCCCCCATAAAGATGGAGGTCATTCAGGCGCAGCTGGAGATTTATGGT
AAGCAACTGGCGCTGAAGAATATGGCGCCGAACTGCTGGTCTTCTGTTGT
CATGGTTTTCGAGCGCATACTAGAGTCTTGGACGGGTACATTCCGGAGGC
TTTTCTTGCGCTCCAACGCCCACATCAACGCCCCAATCAAGGACCAGAGA
AAGGAGATGCTAGAGGCCCTGGCGGTGCTGAAGCCGGTCAACGCGGTCCT
GACGGAGCTCCAGGCCTCGGACTCGAGCACGGGAGCGCGGGTGCCCTTTC
TCATTAACACCCTCCTCGCAACGAGCCTGGACACGAAGCAGCCCCTGCGC
GTGGAAGACCCCGAGGTGCCCTGA
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Synonyms
Publications