NO04G02640, NO04G02640 (gene) Nannochloropsis oceanica

Overview
NameNO04G02640
Unique NameNO04G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6026
Alignment locationchr4:703806..709831 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:703806..709831 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G02640 vs. NCBI_GenBank
Match: EWM28654.1 (hypothetical protein Naga_100177g13 [Nannochloropsis gaditana])

HSP 1 Score: 719.9 bits (1857), Expect = 5.000e-204
Identity = 349/452 (77.21%), Postives = 398/452 (88.05%), Query Frame = 0 
Query:   19 QRMCRGGRTLSLALVALLAGSSFVAAGPKVQSLSCSPGIGDARNADVMVTCALRVVDKESEIDFAYTRLVSPSGKFSLPLLFDGKKSFGMTSYSGANLAASAIIPRHAEPGNWQLDFSGVEGLEVVNKKGDKIMVTSKEAKDLGLSRFVKIYSPDDKTPPYIKDVICATPVLLNV-TRDTFHVKCEFTVQDTGSGVSNVRASFVSPQADALLHMTADVNKDIISSDPKTGEIILSASVPVFPGMPSGIWKMVTAMPLAPYVQDRNRNGFAYKGVEPSVLWTRPQFEVFSAPDTTPPVIQKFGCSATQVIIPFAGEDVYTCQLVVQDDLSGFAYGELAFENPDRNSTATLRFDANTRQVQFSRGGIYVPTLTFDPTAPGGMWAVSKAGLMLSDAAGNVINYNPKELNDRSYPTFLLVSKTDMPPKEEIKSPASAVKVSYSIVLASFVGLFLLQ 470
            +RM +  RTL L+L ALL GS  V A PK+QSLSCSPGIGDARNADV+VTCALRVVD +SEIDFAYTRLVSPSGKFSLPLLFDG KSFG+TSY+GANLAASA IPRHAE G WQLDFSGV+GL+VVNK+G  +M+TSKEA+DLGLSRFVKIYSPDDKTPPYIKDV+C TPV +N+ T +T +VKC+FTV DTGSG + VRASFVSP+ DALLHMTA + KD++SS+P TGE++LSASVPV+ GMPSG W MVTAMPLAP  +DRN N F Y+GV+ S++WTRP FEVFS PDTTPPV+QKFGCSATQVI+PF GED Y+CQLVVQDDLSGFAYGEL FENPDRNSTATLRFDANTRQVQF+RGGI+ PTL+FDPTAPGGMW VSK GL+L D AGN I+YNPKELNDRSYPTFLLVSKTD PP ++ KSPAS++K SYSI+LAS +GLF+LQ
Sbjct:   23 RRMMQRSRTLILSLAALLGGSVLVDAAPKIQSLSCSPGIGDARNADVIVTCALRVVDADSEIDFAYTRLVSPSGKFSLPLLFDGGKSFGLTSYTGANLAASATIPRHAEAGYWQLDFSGVDGLQVVNKQGASVMITSKEARDLGLSRFVKIYSPDDKTPPYIKDVVCTTPVDVNITTTNTVYVKCDFTVIDTGSGPATVRASFVSPEGDALLHMTAGIIKDVVSSNPSTGEVVLSASVPVYTGMPSGNWTMVTAMPLAPSAEDRNGNEFYYEGVDTSLIWTRPTFEVFSQPDTTPPVVQKFGCSATQVIVPFGGEDTYSCQLVVQDDLSGFAYGELVFENPDRNSTATLRFDANTRQVQFARGGIFAPTLSFDPTAPGGMWTVSKEGLLLRDLAGNFISYNPKELNDRSYPTFLLVSKTDAPPAKDSKSPASSLKASYSIILASLLGLFILQ 474
The following BLAST results are available for this feature:
BLAST of NO04G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28654.15.000e-20477.21hypothetical protein Naga_100177g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009553NSK009553Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02640.2NO04G02640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02640.1NO04G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578811gene_2034Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100177g12gene1942Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02640.2NO04G02640.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02640.1NO04G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02640 ID=NO04G02640|Name=NO04G02640|organism=Nannochloropsis oceanica|type=gene|length=6026bp
GGCTGGAAAGATGTTTTTTGGCTCTCTTTTTTGTTTTTTCCATTGCTGAC
CACACACTCAAAAAAGCTCACGTAGAAACATTCCCACTCTCAGCTATACG
ATCAACTGGCAATGCCAGGCCTAGAAGGACCCGCCTTGTTGATGTTGTTC
TTGTTGATGGTGCTGCTGCTGCTCTTGTCGTTGTCCTTGCCGTTGTTCCT
ATGGTTGTTGCCTCCCATTCATTGTTTTCCTCGTTCTACATGCCCGGCAT
CCCTCCTCTCGCTCTCTGCTCTCTCCGTGCAGTACTTTTTCCCTCTCGGC
CCATCCCTTTCCTTATTTTTCTACTAGTATCCAACCATTCATAATACGAT
GACCATTCACCTATGCGTGTCCACGACCTCTCTCTCTTTGCTCTGCTTCC
TCTTTTCCACGAAACATCTCACTTCCACACGCAATAATTTAACCTCCTTC
CATCCATCCTATCCCTGCTCCAACTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCCCGCTCTCTCTCTCCCGCTCTCTCTCTCTCACACTCTT
TCTAACCTAGCTTTATGACATCGCACACACAACAACCACAGCCACCGCCC
CAATTGCCACCGCCACCTTGGACATTGTCGAACGACTCGCGCCACTAGTA
GCCTGTCCAGGGATTGGCTCTGCTGCCGCAGGGGTACCCTCCCGCGGAGC
GATCGAAAATGTCCTTGAGGAAGACTGGACGAGGAAGAAGGTTTGAACGT
CCTTGTTGTTCAACTCGGTGGCCGTGTATTCCTCATAATTGCCACTGTTG
TCCGCAACGACAGCACGGACGAGGGTCCAAGCACCTGGTTCAGTGTTGGG
GGGAAATTGGGCACCGACTGCCTCGCGTACATTCTTGACAGTGACAGCGG
GGAAGGGCCCGAGACCAGGCGAGTCAGGGACAAAGGAAAATTCAACCGCA
TCGTTTTTGGACGGGGAGGCGAAATGCATCGAGGCGTAAGCGATCCCGGA
GTATTCATCAGCGGCGGTAAGGAGGCAACTGACAGGCACCGCATCAAAGT
CATCGAGCTTGACTTCTTGGCCACCATTGCAGTAGAATGAGCTCACGCGC
GGGGCAAAGTTGTCGGCAACGCTCACTACTCGCAGGGTGGGTTTGCTGGA
CAGCGCCTGAGGGTTAACCAGACGTACTGTTCCGGCACTACTCAAGGTAC
GAGATTGGAAGGCCCCAGACGCGGGCAGACTGTAAGAGCCAGCCTCGGCC
CAGGTAGGAACGGAGAGGGTGGAAGTCAGGAGGTACATGGCGTTGGTCGT
GTTGGTCGCGGGCACCAGCAACGCCTCGGAGTACTCGTCAAAGACAAGAG
GGATTACGGTCTTCCCCGTCGGCCCGACCAGGTAGATGGTAGCCTTGCCG
ATGCCAGCTTCATCAGGAATGACGAGTGCTTCGCAGATGATGGTCTTGCT
CTCGTCCGTCACAGTCGCCTCGTTCGCCGCACAGCTCACACCATACAGTA
ATACCCCGCTGGAAGTCTGGATGTTCGCCTGCGGGTACGCCACGGTGTTG
CCATAATAGCTTTCCACCGTCAGGGTCGTCTGCAAGGGCATGATCGTCTC
CTGTGCGGCCTGCTGGGCATAATCAACCGTGTTCCCGGCCTTGTCCGTAA
TCTCCAATCCATAAAATGCGCCCTGATCAGTAAAACCCAAGCTCCATACC
CCCTGATCAGCGGCCTTGGGAATCTTCAAGTCCAGCTGCCAGACTCCGGA
ATTGAGGTTTCCGGAGATGAGGTCTTGCTCACCAAAGTGCATGAGCATAC
GCTTGGTCATGGGGACATTATAAAACGCAGCGCTAATGGTAGAAACGCCC
TTGGAAGCCTGTGCAGCCACGGAGCAAGTCACGTAGTTGTCCGTCTCGCT
CACATTGATGTCAGTCAAGTCGCAGTCGAAGGACGAAATGTAGAGAATGA
CATTATCAGATACCACAGAGGTCGCAATGTCCTTCATGGCTCCTTCCAAC
ACGCCATCAGACACCGCCTCCGTCGTTAGCTTCACGTCCTCCGTCAGTTC
AGTCACCGAAGGAGCTTCCACGTCGTCATCTTCCGCGACTAGGTCTTCAT
CCTCCAAGTCCACATCGTCATCTTCTGCGTCCGTCGAAGCCATTTCTTCG
GCTTTCAGCTCCTCGTCCAGCTTTCCGCTCAGGGGATTGCTCAAGCTGTC
GGCCACCTCGTCCATCATGTCCTTTTCGGGTCCGTCTTCTGTATAGACTG
CCTCGGTGAGATCCCCTCCAAACGTCGTCGAGCCCAAGGCATTGGGCGGA
GTATCCAGAGTATTCTGGAGAGGGGTCTCAGCGATCGTCACAATCTCATC
ATCTCCAGTCAAATCTGTCGCCGAGGTAGCTTCCGCGACCAGGTCTTTAT
CTTCCGCGTCAAGCTCTTCATCTTCCGAATCGAGGTCTTCATCTTCCGAA
TCGAGGTCTTCATCTTCCGAGTCCAAGTCTTCATCTTCCGAATCGAGGTC
TTCATCTTCCGAGTCCAAGTCTTCATCCTCTGCGTCAAGTTCTTCATCTT
CTACGTCAAGTTCCTCATCTTCCGCGTCCAGTTTTTCATCGTCCACGTCC
ACTTTTTCATCTTCCGCGTCTACTTCTTCATCTTCCGCGTCCAGCTCGTT
ATCCTCCATTGCCTTTTCGGGGGACTCATCAGTCACAAAGACCGCCTCAT
TCAGATCTCCTCCAAATGTCGTCGAACCTAAGGCATTGGGTGAGGTCACT
AAATCCTGCTGAAGGGGGGTCTTGTCATTTTTTGAGTCGGCCTTGCGGGG
GGATGCGTCCTCGACGACCAACTCTTCTTTCTCCTCCATCACGGGTACAG
GCGCCGCCACCACATCCTTCGGCTTTTCGGCTGGCACGTCGGGTAGGGTT
GAAGGTTCAATGGAGGGCTCTGAGACCAGAGGCAGCGTCTCGACCTCGGT
CGTAGGCTTCTCGACGGATGTCGCATTCCTCTCCGCTTTTTGAGCTGTGG
TGGCGACTAGGCAGACGAGCACGAACACCAAAACATTGAGATTTAGGAAG
GGAGCCATGGTCGTGGGTCCTCCTTCTTCTCTATCTTTATACAAAGGATA
TGTGTGATTGTAGATGGGAAATATGAGTGCTTGGGCAAAGAAAGACAAAG
GAAGAGGGGGAAGGAGGCGCGAGACCAGGTGTGGATCGAAGAGAGCGTTG
GGTATGGATCGAGAGGCAAGGGCCTTGGGAAGTGACACGGACCACAGGAA
TCAGTGAGTCTCTTTTACCAAGCTGATATCACATAACAGGTTCGGCCGTG
TGCCTGTGCACGTAGGAACAGCAGCTGTGGAGAGAGGGCGTCGACACTTC
GTCCAGATCTCTCTTTTTGCTGCTCCCCTCTGGCTAACGGCTCCTCCATT
CGAAATTGCCGTTAGAATCGAAGCGACACTCCCATGCGCTGGACAGAGAC
AAGGCCACACTCACAGACTGCTCCCCAAACGTGACCAGTACACGCATGGT
TTTGAGGAACTGAATCTAAAATACTTCGTCGATGCAAGCAAATAGCAGGT
CACGCGTCGTCTCTTCTTTCTCTTTATAGAAGCCAGAGGGAGAGGAGGCA
GAGAAGTGCATGGCGTGGCTTCGGTGCCCCCTCGCCTTCGTCCCTTGTCC
CTTCTTCTCCCCTTTATGACTACATCAGGCTATATTGCTCACAACTATAT
TAATACCACAAACATACATAGCCCGTCCTTTCCCATCCAGGCCGACACCA
AAGTATAATCACACACTTATGTGAGTCGTCCGATGAGAATGTCCCCGTCT
CAACGTAATTCTGAAGCTTCCCGCGAGGGAGCCAGGCTCGCGCGTCGCAT
ACCCCAAAGGAAGAAATAGACGTCCTTTTAATCTCATTGCCACCCTTGTT
AACACAGTATGTCCATTCCGCACATCACCACGACACAGATTACACCTCGA
GCGAGCCCGCAACAGAGGATGTGTCGCGGCGGTAGAACACTCAGTCTAGC
CCTCGTGGCGTTGTTGGCTGGAAGCAGCTTCGTCGCCGCCGGACCAAAGG
TTCAGTCCTTGTCCTGCTCTCCAGGCATTGGAGACGCCCGCAATGCGGAC
GTGATGGTCACGTGCGCCCTGCGTGTGGTGGATAAGGAGAGCGAAATTGA
CTTCGCTTACACGCGCCTCGTCTCCCCCTCGGGCAAGTTTTCCCTGCCCT
TGCTCTTTGATGGGAAGAAGTCTTTTGGAATGACATCCTATTCGGGCGCC
AATCTGGCTGCCAGCGCCATCATCCCCCGCCATGCTGAGCCTGGAAACTG
GCAGgtacgtgcgtggagggattcgatttgacggtagtttgggaatggta
tatgtgcgtgtacatggtgagagaaggggtatgtgcggagacttatcgaa
gcgacgcgaaggtagttgctgacggcatgtcctgcacgcattttcttatg
tctcacaagcgacccattgcgcagcgtggcagtgctcttgtctccgccgc
cttccctaaccctcaatcacacacacacactccattactttcacttactt
ctcaatagTTGGACTTCAGCGGCGTGGAGGGCCTGGAAGTAGTGAACAAG
AAGGGGGACAAGATCATGGTCACCTCCAAGGAAGCGAAAGACTTGGGCCT
CTCCCGCTTTGTCAAGATCTACTCCCCCGACGACAAGACACCTCCCTATA
TCAAAGACGTTATCTGCGCGACCCCCGTCCTGCTGAATGTCACCCGCGAT
ACCTTCCATGTGAAGTGTGAATTCACGGTCCAAGATACAGGGTCGGGGGT
CTCGAACGTCCGTGCCAGTTTCGTCTCTCCCCAGGCTGATGCCCTCCTGC
ATATGACCGCGGATGTGAACAAAGACATCATCTCCTCCGATCCCAAAACC
GGCGAAATTATTCTCTCCGCTTCCGTCCCCGTCTTCCCCGGCATGCCCTC
AGGGATATGGAAAATGGTGACCGCCATGCCTCTTGCCCCCTACGTCCAAG
ATCGGAACCGCAACGGCTTTGCCTACAAAGGTGTGGAGCCCTCCGTCCTG
TGGACCCGTCCCCAGTTCGAAGTATTTTCTGCCCCTGATACTACTCCTCC
AGTGATCCAGAAGTTTGGCTGCTCAGCAACACAAGTGATCATCCCCTTTG
CGGGAGAGGATGTCTACACGTGTCAATTGGTGGTGCAGGATGATTTATCT
GGCTTCGCGTATGGGGAGCTTGCGTTTGAAAACCCGGACCGAAACAGCAC
AGCCACTTTGCGGTTTGATGCTAACACTCGTCAAGTCCAGTTTTCCCGAG
GAGGCATTTATGTGCCTACGCTCACTTTTGACCCGACGGCGCCGGGGGGC
ATGTGGGCAGTTAGCAAGGCGGGCTTGATGTTGAGTGACGCTGCGGGGAA
CGTGATCAATTATAATCCTAAGGAGTTGAACGATCGGTCATACCCTACCT
TTTTGTTGGTTTCAAAGACGGACATGCCTCCTAAAGAGGAAATCAAGAGC
CCGGCATCTGCTGTTAAGGTATCATATTCCATCGTGTTGGCTTCGTTTGT
TGGACTTTTCCTCTTGCAGCGCGGATAAAGATCAAGCAAAGCAGTGGTTA
GGTGGTATTTACAGTTGCAGCAGTAGTGAAGTAAGCGGACGAATAGAGGA
ACAATAAGAGCATGGATATTCATTCAATCGATCTGGCGCGTCTCTAGGAA
GGGCGTCGCAGTTCAGAGAGAGAGGGAGAGAGAGGGAGAAAGAGGGTGAG
GGGACCGGCGTTGGCAGTGGAGGAGGACGAGGAATCTATGTGCAGCAGAT
AGGGAGCTGGCGGGAGGGAGGAATCGATGTACGATGGGGAAAAGATGTTA
AAAATTGAGTGCGAATTGAAGGGTGAGAGAACGACGAGGATGTACCCATG
TTCCTTACAAAACTCCCTTTTGGGTGTATTTGGTGGGAGGGGAGGAGAAG
GGAGAGAGGCTTTGTGCGCGCTTGCGCTCCCTCTCCCAACATAAGAAAAA
GATTTTTTAAAAAACGAACACGAACA
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protein sequence of NO04G02640.2

>NO04G02640.2-protein ID=NO04G02640.2-protein|Name=NO04G02640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MSIPHITTTQITPRASPQQRMCRGGRTLSLALVALLAGSSFVAAGPKVQS
LSCSPGIGDARNADVMVTCALRVVDKESEIDFAYTRLVSPSGKFSLPLLF
DGKKSFGMTSYSGANLAASAIIPRHAEPGNWQLDFSGVEGLEVVNKKGDK
IMVTSKEAKDLGLSRFVKIYSPDDKTPPYIKDVICATPVLLNVTRDTFHV
KCEFTVQDTGSGVSNVRASFVSPQADALLHMTADVNKDIISSDPKTGEII
LSASVPVFPGMPSGIWKMVTAMPLAPYVQDRNRNGFAYKGVEPSVLWTRP
QFEVFSAPDTTPPVIQKFGCSATQVIIPFAGEDVYTCQLVVQDDLSGFAY
GELAFENPDRNSTATLRFDANTRQVQFSRGGIYVPTLTFDPTAPGGMWAV
SKAGLMLSDAAGNVINYNPKELNDRSYPTFLLVSKTDMPPKEEIKSPASA
VKVSYSIVLASFVGLFLLQRG*
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protein sequence of NO04G02640.1

>NO04G02640.1-protein ID=NO04G02640.1-protein|Name=NO04G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MCRGGRTLSLALVALLAGSSFVAAGPKVQSLSCSPGIGDARNADVMVTCA
LRVVDKESEIDFAYTRLVSPSGKFSLPLLFDGKKSFGMTSYSGANLAASA
IIPRHAEPGNWQLDFSGVEGLEVVNKKGDKIMVTSKEAKDLGLSRFVKIY
SPDDKTPPYIKDVICATPVLLNVTRDTFHVKCEFTVQDTGSGVSNVRASF
VSPQADALLHMTADVNKDIISSDPKTGEIILSASVPVFPGMPSGIWKMVT
AMPLAPYVQDRNRNGFAYKGVEPSVLWTRPQFEVFSAPDTTPPVIQKFGC
SATQVIIPFAGEDVYTCQLVVQDDLSGFAYGELAFENPDRNSTATLRFDA
NTRQVQFSRGGIYVPTLTFDPTAPGGMWAVSKAGLMLSDAAGNVINYNPK
ELNDRSYPTFLLVSKTDMPPKEEIKSPASAVKVSYSIVLASFVGLFLLQR
G*
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Synonyms
Publications