NO04G02100, NO04G02100 (gene) Nannochloropsis oceanica

Overview
NameNO04G02100
Unique NameNO04G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr4:607435..607899 -

Link to JBrowse

Properties
Property NameValue
DescriptionDiphthamide biosynthesis
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:607435..607899 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0017183peptidyl-diphthamide biosynthetic process from peptidyl-histidine
Homology
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BLAST of NO04G02100 vs. NCBI_GenBank
Match: EWM28552.1 (diphthamide biosynthesis [Nannochloropsis gaditana])

HSP 1 Score: 124.8 bits (312), Expect = 2.400e-25
Identity = 85/161 (52.80%), Postives = 97/161 (60.25%), Query Frame = 0 
Query:    1 MALGGKAWDGFYSTDFRELGSLLLEEGEGKTNKER--MGEXXXXXXXXXXXXXXGDEPYFSLVSGGFKGGSGTGRAGGSVSMSSSSCSTAMTQFSSPAGDFLQLREYRGLGHDKLAGARTEGE-----EERENXXXXXXXGGPQDGIVQGRTGIASDYGNV 155
            MALGGK+WDG YSTDFREL SL     +    KER    +               DEPYFSLVSGG+KGG G G+A G++ +     STA+T+FSSPAGDFLQLREYRGLGHDK   A  E E     E+RE          P  GIV+GR GIASDY NV
Sbjct:  398 MALGGKSWDGSYSTDFRELESLC----QSGAQKERGLDTDLRKNGNCANCESDGEDEPYFSLVSGGYKGGVG-GKAKGTLPLEG---STALTKFSSPAGDFLQLREYRGLGHDKHKNAVCETETGDRAEDREG------GAKPPAGIVEGRRGIASDYDNV 544
The following BLAST results are available for this feature:
BLAST of NO04G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28552.12.400e-2552.80diphthamide biosynthesis [Nannochloropsis gaditana... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009590NSK009590Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02100.1NO04G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659798gene_2000Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g101gene1973Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02100.1NO04G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02100 ID=NO04G02100|Name=NO04G02100|organism=Nannochloropsis oceanica|type=gene|length=465bp
ATGGCCCTGGGGGGAAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAG
GGAGTTAGGGTCGTTGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGG
AAAGAATGGGGGAAGAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAG
GAGGGTGGGGATGAGCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGG
AGGGAGTGGGACAGGAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTA
GTTGTAGCACGGCGATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTG
CAGTTAAGGGAATATAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAG
GACGGAGGGCGAGGAAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGG
GAGGGCCTCAGGATGGGATTGTACAGGGTCGGACAGGAATTGCATCGGAT
TACGGAAATGTGTGA
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protein sequence of NO04G02100.1

>NO04G02100.1-protein ID=NO04G02100.1-protein|Name=NO04G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MALGGKAWDGFYSTDFRELGSLLLEEGEGKTNKERMGEEEENEGQKGEEK
EGGDEPYFSLVSGGFKGGSGTGRAGGSVSMSSSSCSTAMTQFSSPAGDFL
QLREYRGLGHDKLAGARTEGEEERENGEEDEDEGGPQDGIVQGRTGIASD
YGNV*
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Synonyms
Publications