NO04G02100.1, NO04G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02100.1
Unique NameNO04G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr4:607435..607899 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:607435..607899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02100.1 vs.
Match: EWM28552.1 (diphthamide biosynthesis [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 6.200e-26
Identity = 91/159 (57.23%), Postives = 106/159 (66.67%), Query Frame = 0 
Query:    1 MALGGKAWDGFYSTDFRELGSLLLEEGEGKTNKERMGEEE--ENEGQKGEEKEGGDEPYFSLVSGGFKGGSGTGRAGGSVSMSSSSCSTAMTQFSSPAGDFLQLREYRGLGHDKLAGARTEGEEERENGEEDED-EGG--PQDGIVQGRTGIASDYGNV 155
            MALGGK+WDG YSTDFREL SL     +    KER  + +  +N      E +G DEPYFSLVSGG+KGG G G+A G++ +  S   TA+T+FSSPAGDFLQLREYRGLGHDK   A      E E G+  ED EGG  P  GIV+GR GIASDY NV
Sbjct:  398 MALGGKSWDGSYSTDFRELESLC----QSGAQKERGLDTDLRKNGNCANCESDGEDEPYFSLVSGGYKGGVG-GKAKGTLPLEGS---TALTKFSSPAGDFLQLREYRGLGHDKHKNAVC----ETETGDRAEDREGGAKPPAGIVEGRRGIASDYDNV 544
The following BLAST results are available for this feature:
BLAST of NO04G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400450Expect = 6.20e-26 / Id = 57.23SequenceEWM28552.1
Match NameE-valueIdentityDescription
EWM28552.16.200e-2657.23diphthamide biosynthesis [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02100NO04G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02100.1NO04G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02100.1.cds1NO04G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02100.1 ID=NO04G02100.1|Name=NO04G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGGCCCTGGGGGGAAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAG
GGAGTTAGGGTCGTTGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGG
AAAGAATGGGGGAAGAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAG
GAGGGTGGGGATGAGCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGG
AGGGAGTGGGACAGGAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTA
GTTGTAGCACGGCGATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTG
CAGTTAAGGGAATATAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAG
GACGGAGGGCGAGGAAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGG
GAGGGCCTCAGGATGGGATTGTACAGGGTCGGACAGGAATTGCATCGGAT
TACGGAAATGTGTGA
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protein sequence of NO04G02100.1

>NO04G02100.1-protein ID=NO04G02100.1-protein|Name=NO04G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MALGGKAWDGFYSTDFRELGSLLLEEGEGKTNKERMGEEEENEGQKGEEK
EGGDEPYFSLVSGGFKGGSGTGRAGGSVSMSSSSCSTAMTQFSSPAGDFL
QLREYRGLGHDKLAGARTEGEEERENGEEDEDEGGPQDGIVQGRTGIASD
YGNV*
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mRNA from alignment at chr4:607435..607899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02100.1 ID=NO04G02100.1|Name=NO04G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp|location=Sequence derived from alignment at chr4:607435..607899- (Nannochloropsis oceanica)
ATGGCCCTGGGGGGAAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAG
GGAGTTAGGGTCGTTGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGG
AAAGAATGGGGGAAGAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAG
GAGGGTGGGGATGAGCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGG
AGGGAGTGGGACAGGAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTA
GTTGTAGCACGGCGATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTG
CAGTTAAGGGAATATAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAG
GACGGAGGGCGAGGAAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGG
GAGGGCCTCAGGATGGGATTGTACAGGGTCGGACAGGAATTGCATCGGAT
TACGGAAATGTGTGA
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Coding sequence (CDS) from alignment at chr4:607435..607899-

>NO04G02100.1 ID=NO04G02100.1|Name=NO04G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr4:607435..607899- (Nannochloropsis oceanica)
ATGGCCCTGGGGGGAAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAG
GGAGTTAGGGTCGTTGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGG
AAAGAATGGGGGAAGAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAG
GAGGGTGGGGATGAGCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGG
AGGGAGTGGGACAGGAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTA
GTTGTAGCACGGCGATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTG
CAGTTAAGGGAATATAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAG
GACGGAGGGCGAGGAAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGG
GAGGGCCTCAGGATGGGATTGTACAGGGTCGGACAGGAATTGCATCGGAT
TACGGAAATGTGTGA
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Synonyms
Publications