NO04G02070, NO04G02070 (gene) Nannochloropsis oceanica

Overview
NameNO04G02070
Unique NameNO04G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1717
Alignment locationchr4:596566..598282 -

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA methyltransferase complex GCD14 subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:596566..598282 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016429tRNA (adenine-N1-)-methyltransferase activity
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0031515tRNA (m1A) methyltransferase complex
Vocabulary: Biological Process
TermDefinition
GO:0030488tRNA methylation
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR014816tRNA_MeTrfase_Gcd14
Homology
BLAST of NO04G02070 vs. NCBI_GenBank
Match: EWM28621.1 (tRNA methyltransferase complex GCD14 subunit [Nannochloropsis gaditana])

HSP 1 Score: 461.1 bits (1185), Expect = 4.600e-126
Identity = 259/440 (58.86%), Postives = 293/440 (66.59%), Query Frame = 0
Query:   58 MDFALAQ--AQELAQQATPAKGATLSPSSSTVTKRRPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGKYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPL---------PVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFGD-------------EELRNDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFAKARSVMRGHTAFLTYAIACLHPP 474
            MDFAL Q   +E +Q+ TP+          T TKRR RPFQAGDMV++MERHD+YSH+YLEPGGMFQNRLGHFHHDD+IG+ VGAKV+SRSA G++IRLLLPSPELWT+SIKQRTQIVQDLDQSMVVF LGLRPGM VLESGTGSGAMSHAILR+ISP+GHLHTFEFNEARA +A+VDFE N+V HLVTV H DICQ+L   D   EE  ++              P+   NG         N  A+    +     + P  VS+ P  RTLRG++DAVFLDVP PWLAIPLAAAVLK NA +ATYSPC EQVFKTCEALREHNFHSIRTMEVRHKQF+L RT MP +DFGD              E  N                                           R FAKAR VMRGHTAFLT+A+A LHPP
Sbjct:    1 MDFALVQEWEREESQRGTPSTKPD-GRVVCTATKRR-RPFQAGDMVVVMERHDSYSHVYLEPGGMFQNRLGHFHHDDIIGKHVGAKVMSRSAGGRFIRLLLPSPELWTMSIKQRTQIVQDLDQSMVVFKLGLRPGMRVLESGTGSGAMSHAILRSISPHGHLHTFEFNEARAIDAQVDFERNRVSHLVTVMHGDICQDLSLSD---EESTIVCTSAHMETESDGKDPLGEHNGLAP------NGTAAASQPEAPPPLAHPPAVSVAPVARTLRGRIDAVFLDVPSPWLAIPLAAAVLKANARIATYSPCFEQVFKTCEALREHNFHSIRTMEVRHKQFELRRTCMPHLDFGDGDSVGVGEDLGGAAEKGNGVRGDDQNTAHARETGPKKSESEGMEAWRSKRKHREAEGGKDARPFAKARPVMRGHTAFLTFAVAGLHPP 429          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: GAX20040.1 (tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [Fistulifera solaris])

HSP 1 Score: 246.9 bits (629), Expect = 1.400e-61
Identity = 154/392 (39.29%), Postives = 201/392 (51.28%), Query Frame = 0
Query:   91 RPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASG-KYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDL--------WRTVMPKMDFGDEELR--NDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFAKARSVMRGHTAFLTYAIACLH 472
            R    Q GD+V+IME  D  +  Y+E  GM+ NR GHF H D IG+  G+KV SR+  G  +  LL P+PELW  S+  RTQIV +LDQS ++F L LRP M V+ESGTGSGAMSHAILRTI+P+G LHT+EFN+ RA  AR +FE N V HLVTV H D+C ++          E  A   LP                                  P S+           DAVFLD+P+PW A+P AA VLKPNA +A+YSPC+EQ  +T EA+++  FHS++TME R ++  +         +   PK +  D E R  +  A                                         + A+  + MRGH+AFLT+A A LH
Sbjct:   85 RKETIQVGDLVVIMESFDRLTFAYIEEKGMYSNRHGHFSHKDFIGKPFGSKVRSRNNQGYGFCFLLKPTPELWARSLTHRTQIVHELDQSQIIFQLYLRPNMTVVESGTGSGAMSHAILRTIAPHGKLHTYEFNKMRADTARNEFEKNGVSHLVTVHHRDVCAKI----------EAEAGFDLP----------------------------------PCSV-----------DAVFLDLPEPWHAVPHAAKVLKPNARIASYSPCVEQTQRTVEAMKKAGFHSMKTMEYRLQEHYVDEIEYKSPPKAKRPKFEAHDNEARIMSASAAGSASGNGEQSDDLSDEVETGDDGELAGDEMGEGNEIKAKMVVARPFASMRGHSAFLTFATAGLH 421          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: XP_002178514.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC50179.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 242.3 bits (617), Expect = 3.400e-60
Identity = 134/286 (46.85%), Postives = 170/286 (59.44%), Query Frame = 0
Query:   96 QAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASG-KYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVR 381
            + GD+V+IME  DN + +Y + G +F NR G+FHH+D IG+  G K+ SRS  G  ++ LL P+PELW  S+  RTQIV +LDQS V+F L L+P M V+ESGTGSGAMSHAILRTI+P+G LHT+EFNE RA  AR +F +N VGHLV+V H D+C   G    D           LP                                  P S+           D VFLD+P+PWLA+P AA V+KPNA LA+YSPC+EQ  +  E LR+  FHSI+TME R
Sbjct:    2 RTGDLVVIMESFDNLAFVYAKEGEIFSNRNGNFHHNDFIGKPFGCKIRSRSHRGYGFVYLLKPTPELWARSLNHRTQIVHELDQSQVIFQLHLKPNMTVVESGTGSGAMSHAILRTIAPHGKLHTYEFNEHRADTARHEFANNGVGHLVSVHHKDVCGIRGDGGFD-----------LP----------------------------------PQSV-----------DGVFLDLPEPWLAVPHAAFVMKPNARLASYSPCVEQTQRMVETLRQSGFHSIKTMEYR 231          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: EJK71082.1 (hypothetical protein THAOC_07513 [Thalassiosira oceanica])

HSP 1 Score: 226.9 bits (577), Expect = 1.500e-55
Identity = 124/301 (41.20%), Postives = 175/301 (58.14%), Query Frame = 0
Query:   98 GDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASG-KYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSL-----DMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMP 393
            GD+V++ E  ++ + +Y +   +F NR GHF H+  IG+  G K+ S + SG  ++ LL P+PELW  S+  RTQIV +LD SM+V  L L P M V ESGTGSGAMSHAI+R+I+P G LHTFEFN+ RA +A+ +FE + +GHLV V H D+C +   L     +  GE G+   A         G+      +  N    E +              T      + +  A+FLD+P+PWLA+P AA  L PN  + +YSPC+EQ  +TC ALR + FHS+RT+E R K+F +    +P
Sbjct:  131 GDLVVVFESFNDLNFVYAKKDAIFSNRNGHFKHNSFIGKPYGCKIRSNNNSGLGFLYLLRPTPELWARSLPHRTQIVHELDASMIVHYLNLCPNMTVCESGTGSGAMSHAIMRSIAPRGMLHTFEFNKVRADKAKKEFEEHGLGHLVQVHHRDVCGKKSLLLQKSGEKPGEAGDEPKA--------GGSRDDGPNESENNGVEEDDG-------------TGGFLIGQAKAHAIFLDLPEPWLAVPHAAHTLCPNGRICSYSPCMEQTQRTCAALRRNGFHSLRTVEARLKEFYVASVELP 410          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: XP_005854625.1 (hypothetical protein NGA_2123900, partial [Nannochloropsis gaditana CCMP526] >EKU21739.1 hypothetical protein NGA_2123900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.3 bits (573), Expect = 4.300e-55
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0
Query:   86 TVTKRRPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGKYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRT 211
            T TKRR RPFQAGDMV++MERHD+YSH+YLEPGGMFQNRLGHFHHDD+IG+ VGAKV+SRSA G++IRLLLPSPELWT+SIKQRTQIVQDLDQSMVVF LGLRPGM VLESGTGSGAMSHAILR+
Sbjct:   15 TATKRR-RPFQAGDMVVVMERHDSYSHVYLEPGGMFQNRLGHFHHDDIIGKHVGAKVMSRSAGGRFIRLLLPSPELWTMSIKQRTQIVQDLDQSMVVFKLGLRPGMRVLESGTGSGAMSHAILRS 138          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: XP_002288909.1 (hypothetical protein THAPSDRAFT_261852, partial [Thalassiosira pseudonana CCMP1335] >EED94345.1 hypothetical protein THAPSDRAFT_261852, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 221.1 bits (562), Expect = 8.100e-54
Identity = 115/290 (39.66%), Postives = 164/290 (56.55%), Query Frame = 0
Query:   96 QAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASG-KYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQF 385
            Q  D+V+I E  ++ + +Y  P  +F NR GHFHH+D IG+  G K+ SR+  G  ++ LL P+PELW  S+  RTQIV +LD +M+V  L + P M V ESGTGSGAMSH  LR+++P G LHT+EFN+ R  +AR +F  + +GHLV V H D+C +   L ++G+                                    ++ H                     A+FLD+P+PWLA+P AA  +KPN  + +YSPC+EQ  +TC ALR+H FHSI+T+E R K++
Sbjct:    2 QPTDLVVIFESFNDINFVYATPNDIFSNRNGHFHHNDFIGKPYGCKIRSRNNDGLGFLYLLRPTPELWARSLPHRTQIVHELDAAMIVHHLNVSPNMIVCESGTGSGAMSHVFLRSLAPMGKLHTYEFNKVRVEKARDEFVGHGLGHLVEVHHRDVCGKKALLKLNGQ------------------------------------SVAH---------------------AIFLDLPEPWLAVPHAAHTIKPNGRICSYSPCMEQTQRTCTALRQHGFHSIQTVEARLKEY 234          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: OEU16159.1 (tRNA methyltransferase, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 218.0 bits (554), Expect = 6.800e-53
Identity = 114/287 (39.72%), Postives = 159/287 (55.40%), Query Frame = 0
Query:   98 GDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASG-KYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQ 384
            G++V+I E  D+ +  Y E G +F NR GHFHHDD IG+  G K+ SR+  G  ++ LL P+PELW+ S+  RTQI+  LD SM+VF L +RP M + ESGTGSGA+SH I+R+I+P G LHT+EFN+ RA  A+++F +N V H+  V H D+C + G    D  +  V                                                        DA+ LD+P+PW A+P AA  +KPN+ + +YSPC+EQ  KT  A++   FHSI+TME R K+
Sbjct:    4 GNLVVIFENFDSSNFCYAEKGKIFNNRNGHFHHDDFIGKPYGCKIRSRNNRGWGFVYLLKPTPELWSQSLNHRTQIIHFLDASMIVFYLNIRPNMVICESGTGSGALSHCIMRSIAPKGMLHTYEFNQQRAETAKLEFANNGVSHISEVHHKDVCGKHGPGGFDRPQSSV--------------------------------------------------------DAIVLDLPEPWSAVPYAAHCIKPNSRIVSYSPCVEQAQKTIIAMKTSGFHSIKTMEFRLKE 234          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: CBJ27631.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 215.3 bits (547), Expect = 4.400e-52
Identity = 120/283 (42.40%), Postives = 156/283 (55.12%), Query Frame = 0
Query:   98 GDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGKYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVR 381
            GDMV+  E  +      ++   ++Q R G FHHD++IG+  G++V SR+  G Y+  L P+PELW+  +  RTQIVQD DQS+V+F L L+PG  V+ESGTGSG MS AI+RTI+P+G LH+FEFNE RA  A+ +FE N +G LV   H D+C   G     GEE                                                      L G+ DAVFLD+P+PWLA+  A   LKP   L +YSPC+EQV KTCEALR   FHS+ T+E R
Sbjct:   30 GDMVVFFEGREPIGFDRMKAKTIWQCRHGAFHHDEIIGKPFGSRVFSRTTKG-YVYALSPTPELWSHVVPNRTQIVQDFDQSIVIFRLDLKPGDTVVESGTGSGVMSTAIMRTIAPSGFLHSFEFNEFRATRAQEEFEENALGGLVKAVHRDVCAARGDGGGFGEE------------------------------------------------------LDGKADAVFLDLPEPWLAVAHAKMTLKPGKKLCSYSPCIEQVMKTCEALRSEGFHSVSTIEFR 257          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: XP_002998926.1 (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit, putative [Phytophthora infestans T30-4] >EEY69072.1 tRNA (adenine-N(1)-)-methyltransferase catalytic subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 202.2 bits (513), Expect = 3.900e-48
Identity = 118/331 (35.65%), Postives = 177/331 (53.47%), Query Frame = 0
Query:   68 LAQQATPAKGATLSPSSSTVTKRRPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGK-YIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFG 398
            +A  +     A+++   +++ K  P   + G +VI+ E H++ ++ Y + G ++QNR G F+H+DMIG+  G+K++SR  +   Y+ LL P+PELW+ +++ RTQIV  LD S ++F  GLR G  V+ESGTGSGA++ +  RT++P+GH+ TFEFN  RA  AR +F+ N +  ++TV   D C++                                     G   E+E                      G +D VFLD+P PW A+  AA +LK     A+YSPC+EQV KTC ALR  NF  IRT+E R   ++  R  +P  DFG
Sbjct:    1 MAMPSAEVNAASVTTIPNSMWKSLPL-IEEGSLVILFETHNSLTYCYAQRGAIYQNRHGAFYHNDMIGQPFGSKIISRKKNAHGYLILLAPTPELWSRALRHRTQIVFTLDASAIMFAAGLRSGSRVVESGTGSGALTTSFARTVAPHGHVFTFEFNAHRAEIAREEFKRNGLESVITVDCRDACEQ-------------------------------------GFPVELE----------------------GTIDMVFLDLPSPWKAVGHAAKMLKQGGFFASYSPCIEQVQKTCGALRSANFELIRTIETRLVPYNSRRIDLPVPDFG 271          
BLAST of NO04G02070 vs. NCBI_GenBank
Match: OWZ09622.1 (TRNA (adenine-N(1)-)-methyltransferase catalytic subunit [Phytophthora megakarya])

HSP 1 Score: 201.8 bits (512), Expect = 5.100e-48
Identity = 115/309 (37.22%), Postives = 167/309 (54.05%), Query Frame = 0
Query:   90 RRPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGK-YIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFG 398
            + P   + G +VI+ E H++ ++IY +   ++QNR G F+H+DMIG+  G+K++SR  + + Y+ LL P+PELW+ +++ RTQIV  LD S ++F   LR G  V+ESGTGSGA++ +  RT++P+GH+ TFEFN  RA  AR +F+ N +  ++TV   D C++                                     G   E+E                      G +D VFLD+P PW AI  AA +LK     A+YSPC+EQV KTC ALR  NF  IRT+E R   ++  R  +P  DFG
Sbjct:   20 KSPSLIEEGSLVILFETHNSLTYIYAQRDAIYQNRHGAFYHNDMIGQPFGSKIISRKKNAQGYLILLAPTPELWSRALRHRTQIVFTLDASAIMFAAALRSGSRVVESGTGSGALTTSFARTVAPHGHVFTFEFNAHRAEIAREEFKRNGLEKVITVDCRDACEQ-------------------------------------GFPVELE----------------------GTIDMVFLDLPSPWNAIGHAAKMLKQGGFFASYSPCIEQVQKTCGALRNANFELIRTIETRLVPYNSRRIDLPVPDFG 269          
The following BLAST results are available for this feature:
BLAST of NO04G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28621.14.600e-12658.86tRNA methyltransferase complex GCD14 subunit [Nann... [more]
GAX20040.11.400e-6139.29tRNA (adenine57-N1/adenine58-N1)-methyltransferase... [more]
XP_002178514.13.400e-6046.85predicted protein, partial [Phaeodactylum tricornu... [more]
EJK71082.11.500e-5541.20hypothetical protein THAOC_07513 [Thalassiosira oc... [more]
XP_005854625.14.300e-5586.40hypothetical protein NGA_2123900, partial [Nannoch... [more]
XP_002288909.18.100e-5439.66hypothetical protein THAPSDRAFT_261852, partial [T... [more]
OEU16159.16.800e-5339.72tRNA methyltransferase, partial [Fragilariopsis cy... [more]
CBJ27631.14.400e-5242.40conserved unknown protein [Ectocarpus siliculosus][more]
XP_002998926.13.900e-4835.65tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
OWZ09622.15.100e-4837.22TRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009594NSK009594Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02070.1NO04G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551643gene_1996Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g97gene1976Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02070.1NO04G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02070 ID=NO04G02070|Name=NO04G02070|organism=Nannochloropsis oceanica|type=gene|length=1717bp
ATGAAGAGAAGACTCATATACGCTTCCTTCCAAAAGCACAGGTTCTATCA
GACGCGATATTTCCAGCAGAAGCTGCAGTGCTGCTCCCCACCCCTGAAGC
AGCAAGAATCCGAAACGCGGCGGCAAAAATACAGGGACCACCACCCCACC
ACCCACCCCACCCGAAGCACCATGGACTTTGCCTTGGCACAGGCCCAGGA
GCTGGCGCAGCAAGCCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGT
CGTCGACAGTCACCAAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATG
GTCATTATCATGGAGCGGCACGATAACTACTCCCACATTTACTTGGAGCC
GGGCGGCATGTTCCAAAACCGTCTAGGCCACTTCCACCATGACGACATGA
TCGGTAGATCCGTTGGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAG
TACATCCGTCTCTTGCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAA
GCAACGCACGCAAATCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCA
TGCTGGGCTTGCGACCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCA
GGGGCCATGTCACATGCGATTTTGCGGACGATCAGCCCCAACGGGCATTT
GCACACATTTGAGTTTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATT
TTGAGCATAACAAGGTCGGGCATCTCGTAACGGTGCGGCATGCGGATATT
TGCCAGGAACTGGGGTCGTTGGATATGGACGGAGAGGAGGGTGAGGTGCT
TGCTGCAGTTCCTCTTCCTGTGAATGTCATGAATGGTGCTACAGCAACTG
CTTGTACAGATATGAATAACGGGGCCTCGACCGAAATCGAAGACACTATG
ATCCATTCCTCATCACCTCTTCCTGTAAGTATCACCCCAACCATCAGGAC
GCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGTGGT
TAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTCGCC
ACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTTGAG
AGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGCAAT
TTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAGGAA
CTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAATAG
AAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGCGGA
GGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTTGCA
AAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGCAAT
TGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTCCTT
CATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCGACA
TCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGAAGC
GTAACAATTGACTTCGAAGGAGAGAAACAAACACAAAATTATATAGTTGC
TCCATCGCATTGACGGAATAACTCCGTCACTGACGTGTTTCAGGCGCAAT
TGTTTGAAACCTTGGGGTGTAGCGGGGCAGGACACGGCGTGCATCTTAGG
CAGAAAATCGTCAAAGA
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protein sequence of NO04G02070.1

>NO04G02070.1-protein ID=NO04G02070.1-protein|Name=NO04G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MKRRLIYASFQKHRFYQTRYFQQKLQCCSPPLKQQESETRRQKYRDHHPT
THPTRSTMDFALAQAQELAQQATPAKGATLSPSSSTVTKRRPRPFQAGDM
VIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGK
YIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGS
GAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADI
CQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTM
IHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLA
TYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFGDEE
LRNDEAEEKETEKEENRKEIEGEVQTKEGKRKRREGAGEGGEEEEERLFA
KARSVMRGHTAFLTYAIACLHPPDRRSAPPAPPSSFHPEKTPATATVCST
SAGLKKDEIVNELAAEA*
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Synonyms
Publications