NO04G02070.1, NO04G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02070.1
Unique NameNO04G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1717
Alignment locationchr4:596566..598282 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:596566..598282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G02070.1 vs.
Match: EWM28621.1 (tRNA methyltransferase complex GCD14 subunit [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 1.900e-127
Identity = 279/491 (56.82%), Postives = 327/491 (66.60%), Query Frame = 0 
Query:   58 MDFALAQA--QELAQQATPAKGATLSPSSSTVTKRRPRPFQAGDMVIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGKYIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGSLDMDGEEGEVLAAVPL---------PVNVMNGATATACTDMNNGASTEIEDTMIHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFGDEE-----------------LRNDEAEEKETEKEENRKEIEGEVQTKEGKRKRREGAGEGGEEEEERLFAKARSVMRGHTAFLTYAIACLHPPDR---RSAPPAPPSSFHPEKTPATATVCSTSAGLKKDEIVNELAAEA 518
            MDFAL Q   +E +Q+ TP+          T TKRR RPFQAGDMV++MERHD+YSH+YLEPGGMFQNRLGHFHHDD+IG+ VGAKV+SRSA G++IRLLLPSPELWT+SIKQRTQIVQDLDQSMVVF LGLRPGM VLESGTGSGAMSHAILR+ISP+GHLHTFEFNEARA +A+VDFE N+V HLVTV H DICQ+L   D   EE  ++              P+   NG         N  A+    +     + P  VS+ P  RTLRG++DAVFLDVP PWLAIPLAAAVLK NA +ATYSPC EQVFKTCEALREHNFHSIRTMEVRHKQF+L RT MP +DFGD +                 +R D+       +   +K     ++    KRK RE   EGG  ++ R FAKAR VMRGHTAFLT+A+A LHPP      +  P  P+ + P   P               + V+ELAAEA
Sbjct:    1 MDFALVQEWEREESQRGTPSTKPD-GRVVCTATKRR-RPFQAGDMVVVMERHDSYSHVYLEPGGMFQNRLGHFHHDDIIGKHVGAKVMSRSAGGRFIRLLLPSPELWTMSIKQRTQIVQDLDQSMVVFKLGLRPGMRVLESGTGSGAMSHAILRSISPHGHLHTFEFNEARAIDAQVDFERNRVSHLVTVMHGDICQDLSLSD---EESTIVCTSAHMETESDGKDPLGEHNGLAP------NGTAAASQPEAPPPLAHPPAVSVAPVARTLRGRIDAVFLDVPSPWLAIPLAAAVLKANARIATYSPCFEQVFKTCEALREHNFHSIRTMEVRHKQFELRRTCMPHLDFGDGDSVGVGEDLGGAAEKGNGVRGDDQNTAHARETGPKKSESEGMEAWRSKRKHRE--AEGG--KDARPFAKARPVMRGHTAFLTFAVAGLHPPKSLGPGAVGPTVPAPWIPTSGPPAPA----------PDPVDELAAEA 466
The following BLAST results are available for this feature:
BLAST of NO04G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28621.11.900e-12756.82tRNA methyltransferase complex GCD14 subunit [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02070NO04G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02070.1NO04G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02070.1.cds1NO04G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02070.1 ID=NO04G02070.1|Name=NO04G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
ATGAAGAGAAGACTCATATACGCTTCCTTCCAAAAGCACAGGTTCTATCA
GACGCGATATTTCCAGCAGAAGCTGCAGTGCTGCTCCCCACCCCTGAAGC
AGCAAGAATCCGAAACGCGGCGGCAAAAATACAGGGACCACCACCCCACC
ACCCACCCCACCCGAAGCACCATGGACTTTGCCTTGGCACAGGCCCAGGA
GCTGGCGCAGCAAGCCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGT
CGTCGACAGTCACCAAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATG
GTCATTATCATGGAGCGGCACGATAACTACTCCCACATTTACTTGGAGCC
GGGCGGCATGTTCCAAAACCGTCTAGGCCACTTCCACCATGACGACATGA
TCGGTAGATCCGTTGGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAG
TACATCCGTCTCTTGCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAA
GCAACGCACGCAAATCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCA
TGCTGGGCTTGCGACCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCA
GGGGCCATGTCACATGCGATTTTGCGGACGATCAGCCCCAACGGGCATTT
GCACACATTTGAGTTTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATT
TTGAGCATAACAAGGTCGGGCATCTCGTAACGGTGCGGCATGCGGATATT
TGCCAGGAACTGGGGTCGTTGGATATGGACGGAGAGGAGGGTGAGGTGCT
TGCTGCAGTTCCTCTTCCTGTGAATGTCATGAATGGTGCTACAGCAACTG
CTTGTACAGATATGAATAACGGGGCCTCGACCGAAATCGAAGACACTATG
ATCCATTCCTCATCACCTCTTCCTGTAAGTATCACCCCAACCATCAGGAC
GCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGTGGT
TAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTCGCC
ACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTTGAG
AGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGCAAT
TTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAGGAA
CTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAATAG
AAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGCGGA
GGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTTGCA
AAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGCAAT
TGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTCCTT
CATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCGACA
TCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGAAGC
GTAACAATTGACTTCGAAGGAGAGAAACAAACACAAAATTATATAGTTGC
TCCATCGCATTGACGGAATAACTCCGTCACTGACGTGTTTCAGGCGCAAT
TGTTTGAAACCTTGGGGTGTAGCGGGGCAGGACACGGCGTGCATCTTAGG
CAGAAAATCGTCAAAGA
back to top

protein sequence of NO04G02070.1

>NO04G02070.1-protein ID=NO04G02070.1-protein|Name=NO04G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MKRRLIYASFQKHRFYQTRYFQQKLQCCSPPLKQQESETRRQKYRDHHPT
THPTRSTMDFALAQAQELAQQATPAKGATLSPSSSTVTKRRPRPFQAGDM
VIIMERHDNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGK
YIRLLLPSPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGS
GAMSHAILRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADI
CQELGSLDMDGEEGEVLAAVPLPVNVMNGATATACTDMNNGASTEIEDTM
IHSSSPLPVSITPTIRTLRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLA
TYSPCLEQVFKTCEALREHNFHSIRTMEVRHKQFDLWRTVMPKMDFGDEE
LRNDEAEEKETEKEENRKEIEGEVQTKEGKRKRREGAGEGGEEEEERLFA
KARSVMRGHTAFLTYAIACLHPPDRRSAPPAPPSSFHPEKTPATATVCST
SAGLKKDEIVNELAAEA*
back to top

mRNA from alignment at chr4:596566..598282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02070.1 ID=NO04G02070.1|Name=NO04G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at chr4:596566..598282- (Nannochloropsis oceanica)
ATGAAGAGAAGACTCATATACGCTTCCTTCCAAAAGCACAGGTTCTATCA
GACGCGATATTTCCAGCAGAAGCTGCAGTGCTGCTCCCCACCCCTGAAGC
AGCAAGAATCCGAAACGCGGCGGCAAAAATACAGGGACCACCACCCCACC
ACCCACCCCACCCGAAGCACCATGGACTTTGCCTTGGCACAGGCCCAGGA
GCTGGCGCAGCAAGCCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGT
CGTCGACAGTCACCAAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATG
GTCATTATCATGGAGCGGCACGATAACTACTCCCACATTTACTTGGAGCC
GGGCGGCATGTTCCAAAACCGTCTAGGCCACTTCCACCATGACGACATGA
TCGGTAGATCCGTTGGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAG
TACATCCGTCTCTTGCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAA
GCAACGCACGCAAATCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCA
TGCTGGGCTTGCGACCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCA
GGGGCCATGTCACATGCGATTTTGCGGACGATCAGCCCCAACGGGCATTT
GCACACATTTGAGTTTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATT
TTGAGCATAACAAGGTCGGGCATCTCGTAACGGTGCGGCATGCGGATATT
TGCCAGGAACTGGGGTCGTTGGATATGGACGGAGAGGAGGGTGAGGTGCT
TGCTGCAGTTCCTCTTCCTGTGAATGTCATGAATGGTGCTACAGCAACTG
CTTGTACAGATATGAATAACGGGGCCTCGACCGAAATCGAAGACACTATG
ATCCATTCCTCATCACCTCTTCCTGTAAGTATCACCCCAACCATCAGGAC
GCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGTGGT
TAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTCGCC
ACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTTGAG
AGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGCAAT
TTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAGGAA
CTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAATAG
AAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGCGGA
GGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTTGCA
AAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGCAAT
TGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTCCTT
CATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCGACA
TCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGAAGC
GTAACAATTGACTTCGAAGGAGAGAAACAAACACAAAATTATATAGTTGC
TCCATCGCATTGACGGAATAACTCCGTCACTGACGTGTTTCAGGCGCAAT
TGTTTGAAACCTTGGGGTGTAGCGGGGCAGGACACGGCGTGCATCTTAGG
CAGAAAATCGTCAAAGA
back to top

Coding sequence (CDS) from alignment at chr4:596566..598282-

>NO04G02070.1 ID=NO04G02070.1|Name=NO04G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr4:596566..598282- (Nannochloropsis oceanica)
ATGAAGAGAAGACTCATATACGCTTCCTTCCAAAAGCACAGGTTCTATCA
GACGCGATATTTCCAGCAGAAGCTGCAGTGCTGCTCCCCACCCCTGAAGC
AGCAAGAATCCGAAACGCGGCGGCAAAAATACAGGGACCACCACCCCACC
ACCCACCCCACCCGAAGCACCATGGACTTTGCCTTGGCACAGGCCCAGGA
GCTGGCGCAGCAAGCCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGT
CGTCGACAGTCACCAAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATG
GTCATTATCATGGAGCGGCACGATAACTACTCCCACATTTACTTGGAGCC
GGGCGGCATGTTCCAAAACCGTCTAGGCCACTTCCACCATGACGACATGA
TCGGTAGATCCGTTGGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAG
TACATCCGTCTCTTGCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAA
GCAACGCACGCAAATCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCA
TGCTGGGCTTGCGACCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCA
GGGGCCATGTCACATGCGATTTTGCGGACGATCAGCCCCAACGGGCATTT
GCACACATTTGAGTTTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATT
TTGAGCATAACAAGGTCGGGCATCTCGTAACGGTGCGGCATGCGGATATT
TGCCAGGAACTGGGGTCGTTGGATATGGACGGAGAGGAGGGTGAGGTGCT
TGCTGCAGTTCCTCTTCCTGTGAATGTCATGAATGGTGCTACAGCAACTG
CTTGTACAGATATGAATAACGGGGCCTCGACCGAAATCGAAGACACTATG
ATCCATTCCTCATCACCTCTTCCTGTAAGTATCACCCCAACCATCAGGAC
GCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGTGGT
TAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTCGCC
ACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTTGAG
AGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGCAAT
TTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAGGAA
CTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAATAG
AAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGCGGA
GGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTTGCA
AAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGCAAT
TGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTCCTT
CATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCGACA
TCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGAAGC
GTAA
back to top
Synonyms
Publications