NO04G02020, NO04G02020 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G02020 vs. NCBI_GenBank
Match: EWM28529.1 (DNA-binding SAP [Nannochloropsis gaditana]) HSP 1 Score: 538.1 bits (1385), Expect = 3.300e-149 Identity = 294/474 (62.03%), Postives = 334/474 (70.46%), Query Frame = 0 Query: 1 MSEDLTPEMVQKMKVAELKAELTKRDLDSSGLKADLVTRLNEHIVSA---------------------GVAGEGANAAPAEPQTQEIDEPLQGEKRKEPEAAPVDDAVEAAADDASN-EQCKKARVE--XXXXXXXXXXXXXXXXXXXXXXXXXXAEXXXXXXXXXXQQQHHVSSAEYVVDTQPVVAAP-KIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQM 450 MS+ LTP+MV KMKVAELKA+LT LD+SGLKA L RL EHI A GEKRKEPE P + + E A+ + E KKARVE A+ QQ SA +V+D++PV A P +KK KGAE+YVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQ GGRNF FVRFSDK+AAARAV+ELDRRLELHGR LTIS+TAVNDKLRF+N+P HWRADQIE AL +QGC+GVYE+E+PL DG+SNQGFCV+EFDNHPAAQRAYR+TTT + GV MDG+RLTV+WPDGVDRSTQQQ QR GL QLD MQVKN+YVGGVPVDVTE EMR+VF +GEIDNVRLAGQAPNARRPDFAF+NYRDR+SAIRALE+LRVEP+AQIRGHAL+VEMA+PPK+ M Sbjct: 1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQG---GSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSM 471
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_020880195.1 (heterogeneous nuclear ribonucleoprotein R [Arabidopsis lyrata subsp. lyrata] >XP_020880196.1 heterogeneous nuclear ribonucleoprotein R [Arabidopsis lyrata subsp. lyrata] >EFH52421.1 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 143.7 bits (361), Expect = 1.800e-30 Identity = 91/279 (32.62%), Postives = 143/279 (51.25%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE DL+ +GEVTE+R+ ++ G G+ + FV F +KD A++A+ L+ E G+ + S T +L N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ + + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 90 GSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASKAIDTLN-STEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 349
BLAST of NO04G02020 vs. NCBI_GenBank
Match: OAP02054.1 (hypothetical protein AXX17_AT3G47100 [Arabidopsis thaliana]) HSP 1 Score: 141.4 bits (355), Expect = 9.000e-30 Identity = 91/279 (32.62%), Postives = 140/279 (50.18%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE DL+ +GEVTE+R+ + G G+ + FV F KD AA A+ L+ + G+ + S T +L N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ + + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 92 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 351
BLAST of NO04G02020 vs. NCBI_GenBank
Match: NP_190834.1 (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >NP_001030849.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >NP_001327786.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >CAB89227.1 putative RNA binding protein [Arabidopsis thaliana] >BAD44088.1 putative RNA-binding protein [Arabidopsis thaliana] >BAD44625.1 putative RNA-binding protein [Arabidopsis thaliana] >ABJ17093.1 At3g52660 [Arabidopsis thaliana] >AEE78976.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >AEE78977.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >ANM65847.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]) HSP 1 Score: 141.4 bits (355), Expect = 9.000e-30 Identity = 91/279 (32.62%), Postives = 140/279 (50.18%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE DL+ +GEVTE+R+ + G G+ + FV F KD AA A+ L+ + G+ + S T +L N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ + + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 91 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 350
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_010426887.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Camelina sativa]) HSP 1 Score: 140.6 bits (353), Expect = 1.500e-29 Identity = 92/279 (32.97%), Postives = 143/279 (51.25%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE DL+ + +GEVTE+R+ ++ G G+ + FV F +KD AA A+ L+ + G+ + S T +L N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ A + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 92 GSEVYLGGIPTDATEGDLKGFCNSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLAAEAIETLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYAKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 350
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_020272954.1 (heterogeneous nuclear ribonucleoprotein Q-like [Asparagus officinalis]) HSP 1 Score: 140.6 bits (353), Expect = 1.500e-29 Identity = 85/280 (30.36%), Postives = 147/280 (52.50%), Query Frame = 0 Query: 168 KKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEME-LPLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGH-ALDVEMAKP 445 K K E+++G LD EEDLR +F ++GE+ E+R+ M Q G + + FVR++D A +AV++ + ++E+ G+ S ND + N+ W+ D I L+ G E + + +P ++ SN+GF +VE + + A AY+ G+ + VDW + +D +++ + +VK++Y G+P E ++R F+ FGEI+ + LA +++R DFAFVNY++RE+A+ +ES E + V +AKP Sbjct: 84 KSRKKTEIFIGGLDRDAKEEDLRKVFGEVGEIVEVRMIMDGQSGKNKGYAFVRYADASQAKKAVAQFE-KVEVCGKLCGASALKGNDTIFLGNIDKKWKKDDIVKFLQEIGIEKIEAVTVMPDSSNADSNRGFALVELETNKDAVNAYK--KLQKKDAFGKGRSIKVDWAEPLDDPDEEEMK-------------KVKSVYAEGIPDSWDEEKVREPFKKFGEIERIVLARNIKSSKRKDFAFVNYQNREAALSCIESFDKEELTDNGSKVTVKVSLAKP 347
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_010515736.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R [Camelina sativa] >XP_010515737.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R [Camelina sativa]) HSP 1 Score: 139.4 bits (350), Expect = 3.400e-29 Identity = 90/279 (32.26%), Postives = 143/279 (51.25%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE DL+ + +GEVTE+R+ ++ G G+ + FV F +KD AA A+ L+ + G+ + S T ++ N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ + + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 90 GSEVYLGGIPTDATEGDLKGFCNSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLAAEAIESLN-NTDFRGKRIKCSTTQAKHRIFLGNVPRNWMESDIKKAANKIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 348
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_024367475.1 (uncharacterized protein LOC112278357 [Physcomitrella patens] >PNR26509.1 hypothetical protein PHYPA_031084 [Physcomitrella patens]) HSP 1 Score: 139.4 bits (350), Expect = 3.400e-29 Identity = 95/276 (34.42%), Postives = 141/276 (51.09%), Query Frame = 0 Query: 152 AEYVVDTQPVVAAPKIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMEL--PLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESL 425 AEY + Q + + +K K EVYVG LD TTEEDL+ LF + GEV E+RL Q G R + FVR+S A RA EL +E+ GR T + ND L N+ W+ + + L+S E + E+ L + +G+ N+GF +EF H A A+R P D G DRS + Q + + D QVK+++V G+P E +R F +GEI+ + LA +A+R DF FVN+ +R++A+ +++L Sbjct: 358 AEYDAEAQHSLPFSERRKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEELG-TIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVVETLKSLCIERIEELTLMEDPQVEGL-NRGFAFIEFSTHKDALEAFRKLQQP-------------DAIFGADRSAKVAWAQPLYEPDE-DTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 617
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_006291062.1 (heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >XP_023638619.1 heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >XP_023638621.1 heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >EOA23960.1 hypothetical protein CARUB_v10017177mg [Capsella rubella]) HSP 1 Score: 139.0 bits (349), Expect = 4.500e-29 Identity = 90/279 (32.26%), Postives = 142/279 (50.90%), Query Frame = 0 Query: 172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGV-SNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449 G+EVY+G + TE D++ +GEVTE+R+ ++ G G+ + FV F +KD A+ A+ L+ E G+ + S T +L N+P +W I+ A G GV +ELP E + N+GF +E+ NH A+ + + + PS +D TV W A+ R G GG QVK +Y+ +P D+T+ ++++FE G+I V + P + FV+Y +R S +RAL++ R +I GH LD +AKP Q Sbjct: 90 GSEVYLGGIPTDATEGDIKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASEAIDNLN-NTEFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNICRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 348
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_015617428.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Oryza sativa Japonica Group]) HSP 1 Score: 139.0 bits (349), Expect = 4.500e-29 Identity = 97/296 (32.77%), Postives = 153/296 (51.69%), Query Frame = 0 Query: 171 KGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEA-DGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDW--PDGVDRSTQQQAQQRMGLGGQLDGDMQ------------------VKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKP 445 +G+EV++G L TTEEDLR L GE+ E+RL K ++ + F FV F+ K+AA RA+ EL + E GRTL S + +L N+P +++ ++ +G GV +E+ + D N+GF VE+ NH A A + + P+ V DG +LTV W P G S+ AQ + G +L G + VK IYV +P + ++ +++ +FE GE+ V L A + + DF FV++ +R SA++A++ + + G L+V MAKP Sbjct: 102 QGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEELHDK-EHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKV--DGSQLTVSWAEPKGSSDSSSAAAQLKEAAGERLHGKWEKACINKIVWTRVQPSIEMVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLP-PAKDGHKRDFGFVHFAERSSALKAVKG---SEKYEFNGQVLEVSMAKP 389 The following BLAST results are available for this feature:
BLAST of NO04G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G02020 ID=NO04G02020|Name=NO04G02020|organism=Nannochloropsis oceanica|type=gene|length=2344bpback to top protein sequence of NO04G02020.1 >NO04G02020.1-protein ID=NO04G02020.1-protein|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bpback to top Synonyms
Publications
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