NO04G02020.1, NO04G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02020.1
Unique NameNO04G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2221
Alignment locationchr4:585880..588223 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:585880..588223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02020.1 vs.
Match: EWM28529.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 687.6 bits (1773), Expect = 3.400e-194
Identity = 398/600 (66.33%), Postives = 449/600 (74.83%), Query Frame = 0 
Query:    1 MSEDLTPEMVQKMKVAELKAELTKRDLDSSGLKADLVTRLNEHIVSAGVAGE---------------------GANAAPAEPQTQEIDEPLQGEKRKEPEAAPVDDAVEAAADDASN-EQCKKARVEENENGSAAAPTDPA---PAPAPTSTSRWNAEETVTTAPAEDQQQHHVSSAEYVVDTQPVVAAP-KIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQMMMQQQQRAAYGAAQGYSQGYQQA-YAQGTGYTAGGSYYQQTSGGAWQQQPTEAAYGAYGQQAAVTGQGVWQQQGYGTAGVGGVQQSYGTYGGQQGQQQQWGVGGQQQQGWDQGGTGAGGQSYGRY 574
            MS+ LTP+MV KMKVAELKA+LT   LD+SGLKA L  RL EHI  A   GE                      A   P EP TQ  +E   GEKRKEPE  P + + E  A+   + E  KKARVEE  NG+     + +   PA AP STSRW A+  V TA  + QQ     SA +V+D++PV A P  +KK KGAE+YVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQ GGRNF FVRFSDK+AAARAV+ELDRRLELHGR LTIS+TAVNDKLRF+N+P HWRADQIE AL +QGC+GVYE+E+PL  DG+SNQGFCV+EFDNHPAAQRAYR+TTT + GV MDG+RLTV+WPDGVDRSTQQQ  QR GL  QLD  MQVKN+YVGGVPVDVTE EMR+VF  +GEIDNVRLAGQAPNARRPDFAF+NYRDR+SAIRALE+LRVEP+AQIRGHAL+VEMA+PPK+ MM  QQQR+ YG A  Y+QG QQA YAQGTGYTAGGSYYQQT GG WQQQPTEAAYG Y QQ A   QG   QQGY T    GVQQ +  +G  Q QQQQW  G  QQQ W+Q  TG G QSYGR+
Sbjct:    1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKADDDGEEKEKKAEEVKEEKEEEERKEDEAATPPPEPPTQTEEESHPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEET-NGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQG---GSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSMM--QQQRSMYGQAAVYAQGLQQAQYAQGTGYTAGGSYYQQTQGGGWQQQPTEAAYGIYAQQLAAQ-QGWTGQQGYSTT---GVQQPFAAFG--QQQQQQW-TGTGQQQTWNQ--TGTGQQSYGRF 585
The following BLAST results are available for this feature:
BLAST of NO04G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200Expect = 3.40e-194 / Id = 66.33SequenceEWM28529.1
Match NameE-valueIdentityDescription
EWM28529.13.400e-19466.33DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02020NO04G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02020.1NO04G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02020.1.cds1NO04G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02020.1.cds2NO04G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02020.1 ID=NO04G02020.1|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp
AGGAGTCATCACGCACGCCAGCCGGAAGCAGAGCCATGTCCGAGGACTTG
ACGCCAGAGATGGTGCAGAAGATGAAGGTGGCGGAACTGAAGGCGGAGCT
GACCAAGCGGGACCTGGACTCCAGTGGTTTGAAGGCAGACCTGGTGACCC
GTCTGAACGAACATATCGTTTCGGCCGGCGTAGCGGGGGAAGGGGCCAAT
GCTGCACCGGCCGAGCCACAAACACAAGAGATCGATGAACCTCTCCAGGG
CGAAAAGCGCAAGGAGCCCGAGGCGGCGCCGGTTGACGATGCCGTGGAAG
CCGCTGCGGATGATGCCTCCAACGAACAGTGCAAGAAGGCCCGCGTGGAG
GAAAACGAGAACGGAAGTGCCGCTGCTCCCACCGACCCCGCTCCTGCCCC
TGCCCCGACGTCGACAAGTCGTTGGAATGCCGAGGAGACGGTGACGACCG
CGCCGGCCGAAGACCAGCAGCAGCACCATGTGAGCTCGGCGGAGTATGTA
GTAGACACACAGCCGGTGGTGGCCGCACCCAAGATAAAGAAGACAAAGGG
GGCCGAGGTGTATGTCGGGAACTTGGACCCGTACACGACGGAGGAGGATT
TGCGGGCACTATTTTCACAGTTGGGTGAGGTGACAGAGATTCGTCTGAAG
ATGCGACAGCAGATGGGAGGACGTAACTTTGGATTTGTCCGGTTTTCAGA
CAAGGATGCCGCAGCCCGCGCGGTGTCGGAGTTGGATCGACGCTTGGAAC
TACATGGTCGTACATTGACCATTTCTTTCACGGCTGTTAATGATAAGCTA
CGATTTACAAACCTGCCGATTCATTGGCGGGCGGATCAGATTGAGGCCGC
GTTGGAGTCGCAAGGCTGTGAGGGAGTGTATGAGATGGAGTTACCTTTGG
AGGCAGACGGGGTGTCAAATCAAGGGTTTTGTGTGGTTGAATTCGACAAC
CATCCCGCGGCACAGCGCGCGTATCGCATCACGACGACACCATCGACTGG
GGTGGTTATGGATGGGAAGCGACTGACGGTCGACTGGCCTGATGGGGTGG
ATCGCTCGACGCAACAGCAGGCGCAGCAACGGATGGGGCTGGGAGGGCAA
CTAGACGGTGACATGCAAGTAAAGAACATATATGTGGGCGGGGTGCCTGT
GGATGTGACAGAGGCGGAGATGCGAAGTGTGTTTGAGGCCTTTGGGGAGA
TAGACAATGTACGCTTGGCTGGGCAGGCGCCCAATGCCCGTCGGCCCGAT
TTTGCCTTTGTCAACTACAGGGATCGAGAGAGCGCGATTCGTGCTTTGGA
AAGCTTGCGGGTGGAGCCCAGGGCGCAAATTCGTGGACATGCCTTAGACG
TGGAAATGGCCAAACCTCCCAAGAGTCAGATGATGATGCAGCAGCAACAA
CGGGCAGCCTATGGCGCCGCTCAGGGGTACAGTCAAGGATATCAGCAGGC
GTATGCCCAAGGGACAGGTTACACGGCGGGAGGGAGCTACTATCAGCAAA
CCTCGGGAGGTGCGTGGCAGCAGCAGCCCACGGAGGCGGCGTATGGTGCG
TATGGCCAGCAGGCAGCAGTGACGGGGCAGGGAGTATGGCAACAACAAGG
GTATGGCACGGCTGGCGTAGGGGGAGTGCAGCAATCGTATGGAACGTACG
GTGGACAGCAGGGGCAGCAGCAGCAATGGGGTGTTGGGGGACAGCAGCAG
CAGGGATGGGATCAGGGGGGAACGGGGGCGGGCGGACAGAGTTATGGACG
ATATTAAGTGATTGAAAGAGGGAATGGAGGATAAGAAGAGAGAGAGAGCA
TGGCCAGTGTTGTCTTCCCCCGGGGGAACGAGAAGATAGAAAATGCCACA
TGCACTTGGTAGAAATGCAGGATGAGGAGGCATGTGGGAAAGGGAGAGGG
TCAAACAAATCATAACTTGCTCAACGCTCACAAATCGGGAGAAGGGAGTG
AAAGGAGAGGGGAGGGAGAGGGGAGGCCTTGCGTGCGTCACGCGAAGATG
ACGAATAAATGTGAGGAATCTGGTGCGCTGACTCTTTTCTCTCTATGAGG
AGAGGCAATTGGCGTCTGTAAACCGAGTAATCACCGCTTTATTAACACCC
GCACCGTTTGAGGCAGCCATTTTGATCAAGGGGAAAAGAAGGAAAGATGA
GAGCAGGTACCCACAATAAGCAAGTGAGTGAGAGAAGCAACAAGGCAAAA
AAATATGATAACAAAACAAGC
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protein sequence of NO04G02020.1

>NO04G02020.1-protein ID=NO04G02020.1-protein|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MSEDLTPEMVQKMKVAELKAELTKRDLDSSGLKADLVTRLNEHIVSAGVA
GEGANAAPAEPQTQEIDEPLQGEKRKEPEAAPVDDAVEAAADDASNEQCK
KARVEENENGSAAAPTDPAPAPAPTSTSRWNAEETVTTAPAEDQQQHHVS
SAEYVVDTQPVVAAPKIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVT
EIRLKMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTA
VNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVSNQGFCV
VEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRM
GLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPN
ARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQMM
MQQQQRAAYGAAQGYSQGYQQAYAQGTGYTAGGSYYQQTSGGAWQQQPTE
AAYGAYGQQAAVTGQGVWQQQGYGTAGVGGVQQSYGTYGGQQGQQQQWGV
GGQQQQGWDQGGTGAGGQSYGRY*
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mRNA from alignment at chr4:585880..588223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02020.1 ID=NO04G02020.1|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp|location=Sequence derived from alignment at chr4:585880..588223+ (Nannochloropsis oceanica)
AGGAGTCATCACGCACGCCAGCCGGAAGCAGAGCCATGTCCGAGGACTTG
ACGCCAGAGATGGTGCAGAAGATGAAGGTATGCGGTGCCTGATAGAAAGA
ATCCTGATGTTGGTTGGATCTACGGGGGACTGCAGGCAACACGACAAGAC
CACGTCCTCACCCGTAGGTAAACCACCCACATAACACTTTCTCCTAACAG
GTGGCGGAACTGAAGGCGGAGCTGACCAAGCGGGACCTGGACTCCAGTGG
TTTGAAGGCAGACCTGGTGACCCGTCTGAACGAACATATCGTTTCGGCCG
GCGTAGCGGGGGAAGGGGCCAATGCTGCACCGGCCGAGCCACAAACACAA
GAGATCGATGAACCTCTCCAGGGCGAAAAGCGCAAGGAGCCCGAGGCGGC
GCCGGTTGACGATGCCGTGGAAGCCGCTGCGGATGATGCCTCCAACGAAC
AGTGCAAGAAGGCCCGCGTGGAGGAAAACGAGAACGGAAGTGCCGCTGCT
CCCACCGACCCCGCTCCTGCCCCTGCCCCGACGTCGACAAGTCGTTGGAA
TGCCGAGGAGACGGTGACGACCGCGCCGGCCGAAGACCAGCAGCAGCACC
ATGTGAGCTCGGCGGAGTATGTAGTAGACACACAGCCGGTGGTGGCCGCA
CCCAAGATAAAGAAGACAAAGGGGGCCGAGGTGTATGTCGGGAACTTGGA
CCCGTACACGACGGAGGAGGATTTGCGGGCACTATTTTCACAGTTGGGTG
AGGTGACAGAGATTCGTCTGAAGATGCGACAGCAGATGGGAGGACGTAAC
TTTGGATTTGTCCGGTTTTCAGACAAGGATGCCGCAGCCCGCGCGGTGTC
GGAGTTGGATCGACGCTTGGAACTACATGGTCGTACATTGACCATTTCTT
TCACGGCTGTTAATGATAAGCTACGATTTACAAACCTGCCGATTCATTGG
CGGGCGGATCAGATTGAGGCCGCGTTGGAGTCGCAAGGCTGTGAGGGAGT
GTATGAGATGGAGTTACCTTTGGAGGCAGACGGGGTGTCAAATCAAGGGT
TTTGTGTGGTTGAATTCGACAACCATCCCGCGGCACAGCGCGCGTATCGC
ATCACGACGACACCATCGACTGGGGTGGTTATGGATGGGAAGCGACTGAC
GGTCGACTGGCCTGATGGGGTGGATCGCTCGACGCAACAGCAGGCGCAGC
AACGGATGGGGCTGGGAGGGCAACTAGACGGTGACATGCAAGTAAAGAAC
ATATATGTGGGCGGGGTGCCTGTGGATGTGACAGAGGCGGAGATGCGAAG
TGTGTTTGAGGCCTTTGGGGAGATAGACAATGTACGCTTGGCTGGGCAGG
CGCCCAATGCCCGTCGGCCCGATTTTGCCTTTGTCAACTACAGGGATCGA
GAGAGCGCGATTCGTGCTTTGGAAAGCTTGCGGGTGGAGCCCAGGGCGCA
AATTCGTGGACATGCCTTAGACGTGGAAATGGCCAAACCTCCCAAGAGTC
AGATGATGATGCAGCAGCAACAACGGGCAGCCTATGGCGCCGCTCAGGGG
TACAGTCAAGGATATCAGCAGGCGTATGCCCAAGGGACAGGTTACACGGC
GGGAGGGAGCTACTATCAGCAAACCTCGGGAGGTGCGTGGCAGCAGCAGC
CCACGGAGGCGGCGTATGGTGCGTATGGCCAGCAGGCAGCAGTGACGGGG
CAGGGAGTATGGCAACAACAAGGGTATGGCACGGCTGGCGTAGGGGGAGT
GCAGCAATCGTATGGAACGTACGGTGGACAGCAGGGGCAGCAGCAGCAAT
GGGGTGTTGGGGGACAGCAGCAGCAGGGATGGGATCAGGGGGGAACGGGG
GCGGGCGGACAGAGTTATGGACGATATTAAGTGATTGAAAGAGGGAATGG
AGGATAAGAAGAGAGAGAGAGCATGGCCAGTGTTGTCTTCCCCCGGGGGA
ACGAGAAGATAGAAAATGCCACATGCACTTGGTAGAAATGCAGGATGAGG
AGGCATGTGGGAAAGGGAGAGGGTCAAACAAATCATAACTTGCTCAACGC
TCACAAATCGGGAGAAGGGAGTGAAAGGAGAGGGGAGGGAGAGGGGAGGC
CTTGCGTGCGTCACGCGAAGATGACGAATAAATGTGAGGAATCTGGTGCG
CTGACTCTTTTCTCTCTATGAGGAGAGGCAATTGGCGTCTGTAAACCGAG
TAATCACCGCTTTATTAACACCCGCACCGTTTGAGGCAGCCATTTTGATC
AAGGGGAAAAGAAGGAAAGATGAGAGCAGGTACCCACAATAAGCAAGTGA
GTGAGAGAAGCAACAAGGCAAAAAAATATGATAACAAAACAAGC
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Coding sequence (CDS) from alignment at chr4:585880..588223+

>NO04G02020.1 ID=NO04G02020.1|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at chr4:585880..588223+ (Nannochloropsis oceanica)
ATGTCCGAGGACTTGACGCCAGAGATGGTGCAGAAGATGAAGGTGGCGGA
ACTGAAGGCGGAGCTGACCAAGCGGGACCTGGACTCCAGTGGTTTGAAGG
CAGACCTGGTGACCCGTCTGAACGAACATATCGTTTCGGCCGGCGTAGCG
GGGGAAGGGGCCAATGCTGCACCGGCCGAGCCACAAACACAAGAGATCGA
TGAACCTCTCCAGGGCGAAAAGCGCAAGGAGCCCGAGGCGGCGCCGGTTG
ACGATGCCGTGGAAGCCGCTGCGGATGATGCCTCCAACGAACAGTGCAAG
AAGGCCCGCGTGGAGGAAAACGAGAACGGAAGTGCCGCTGCTCCCACCGA
CCCCGCTCCTGCCCCTGCCCCGACGTCGACAAGTCGTTGGAATGCCGAGG
AGACGGTGACGACCGCGCCGGCCGAAGACCAGCAGCAGCACCATGTGAGC
TCGGCGGAGTATGTAGTAGACACACAGCCGGTGGTGGCCGCACCCAAGAT
AAAGAAGACAAAGGGGGCCGAGGTGTATGTCGGGAACTTGGACCCGTACA
CGACGGAGGAGGATTTGCGGGCACTATTTTCACAGTTGGGTGAGGTGACA
GAGATTCGTCTGAAGATGCGACAGCAGATGGGAGGACGTAACTTTGGATT
TGTCCGGTTTTCAGACAAGGATGCCGCAGCCCGCGCGGTGTCGGAGTTGG
ATCGACGCTTGGAACTACATGGTCGTACATTGACCATTTCTTTCACGGCT
GTTAATGATAAGCTACGATTTACAAACCTGCCGATTCATTGGCGGGCGGA
TCAGATTGAGGCCGCGTTGGAGTCGCAAGGCTGTGAGGGAGTGTATGAGA
TGGAGTTACCTTTGGAGGCAGACGGGGTGTCAAATCAAGGGTTTTGTGTG
GTTGAATTCGACAACCATCCCGCGGCACAGCGCGCGTATCGCATCACGAC
GACACCATCGACTGGGGTGGTTATGGATGGGAAGCGACTGACGGTCGACT
GGCCTGATGGGGTGGATCGCTCGACGCAACAGCAGGCGCAGCAACGGATG
GGGCTGGGAGGGCAACTAGACGGTGACATGCAAGTAAAGAACATATATGT
GGGCGGGGTGCCTGTGGATGTGACAGAGGCGGAGATGCGAAGTGTGTTTG
AGGCCTTTGGGGAGATAGACAATGTACGCTTGGCTGGGCAGGCGCCCAAT
GCCCGTCGGCCCGATTTTGCCTTTGTCAACTACAGGGATCGAGAGAGCGC
GATTCGTGCTTTGGAAAGCTTGCGGGTGGAGCCCAGGGCGCAAATTCGTG
GACATGCCTTAGACGTGGAAATGGCCAAACCTCCCAAGAGTCAGATGATG
ATGCAGCAGCAACAACGGGCAGCCTATGGCGCCGCTCAGGGGTACAGTCA
AGGATATCAGCAGGCGTATGCCCAAGGGACAGGTTACACGGCGGGAGGGA
GCTACTATCAGCAAACCTCGGGAGGTGCGTGGCAGCAGCAGCCCACGGAG
GCGGCGTATGGTGCGTATGGCCAGCAGGCAGCAGTGACGGGGCAGGGAGT
ATGGCAACAACAAGGGTATGGCACGGCTGGCGTAGGGGGAGTGCAGCAAT
CGTATGGAACGTACGGTGGACAGCAGGGGCAGCAGCAGCAATGGGGTGTT
GGGGGACAGCAGCAGCAGGGATGGGATCAGGGGGGAACGGGGGCGGGCGG
ACAGAGTTATGGACGATATTAA
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Synonyms
Publications