NO04G01670, NO04G01670 (gene) Nannochloropsis oceanica

Overview
NameNO04G01670
Unique NameNO04G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length753
Alignment locationchr4:502197..502949 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:502197..502949 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01670 vs. NCBI_GenBank
Match: EWM28537.1 (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-13
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0 
Query:   43 SKLRESAPGKGPQNSQAITSTYTSAQDGRSIASTSSKACGIAKGS--TSNTP-SFDLDLARRGVVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPSQNALLLREPFLQNPSR 167
            S  R   P    +N  A      + +    + S S+ +  I  G+   + TP +  L  + + ++VDK+ L+ L+SQY+ C GC AAVK LL+RPL ELRLLNAVMAD PS   LLLRE F+QNPSR
Sbjct:   33 SSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSR 159
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BLAST of NO04G01670 vs. NCBI_GenBank
Match: CBJ48347.1 (hypothetical protein Esi_0002_0101 [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 6.300e-12
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  103 VVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPS-----QNALLLREPFLQNPSRTIQLVNRFPLPPVPKKVQSHGASGRCPVHR 197
            +VV+K  L +LA   T+C GC A+V+ALLARPL ELR+L AV+ +          A  L+E ++++P R  QL++ FP+  V KKVQ  G++ RC +HR
Sbjct:   49 IVVEKELLAKLALHNTSCAGCVASVRALLARPLSELRMLKAVVDEHGGNGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKVQPMGSAQRCQLHR 147
The following BLAST results are available for this feature:
BLAST of NO04G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
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x 1
100200300400500600700SequenceEWM28537.1CBJ48347.1
Match NameE-valueIdentityDescription
EWM28537.11.500e-1344.09hypothetical protein Naga_100009g52 [Nannochlorops... [more]
CBJ48347.16.300e-1244.44hypothetical protein Esi_0002_0101 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01670.1NO04G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01670.1NO04G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01670 ID=NO04G01670|Name=NO04G01670|organism=Nannochloropsis oceanica|type=gene|length=753bp
ATGTCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTA
TGGCCATTACCACCAGCCACATCGTTCCAGGGAGTCCTCTTCGGGGGGGA
GGTCTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCA
GGAAAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGC
TCAGGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCG
CTAAAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGG
CGCGGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATA
CACAGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTC
CTTTGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCT
CAAAACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGAC
CATCCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCC
AATCCCATGGAGCCAGTGGCCGATGTCCCGTACATCGTCGAGCAGGGTCG
TCGGCGGTGATTCATCATAGAAGCAGCATCAGCAGCAGCAGCAGCAGCAG
TAACAGTAACAATGGTTGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGA
GGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGA
TAG
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protein sequence of NO04G01670.1

>NO04G01670.1-protein ID=NO04G01670.1-protein|Name=NO04G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSSSAAPDPTSCSHSHYGHYHQPHRSRESSSGGRSSPGDGRASKLRESAP
GKGPQNSQAITSTYTSAQDGRSIASTSSKACGIAKGSTSNTPSFDLDLAR
RGVVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPS
QNALLLREPFLQNPSRTIQLVNRFPLPPVPKKVQSHGASGRCPVHRRAGS
SAVIHHRSSISSSSSSSNSNNGWGGGWMESGSGRKPGKGYLQKRKKRWPR
*
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Synonyms
Publications