NO04G01670.1, NO04G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01670.1
Unique NameNO04G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length753
Alignment locationchr4:502197..502949 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:502197..502949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01670.1 vs.
Match: EWM28537.1 (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-13
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0 
Query:   43 SKLRESAPGKGPQNSQAITSTYTSAQDGRSIASTSSKACGIAKGSTSN--TPS-FDLDLARRGVVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPSQNALLLREPFLQNPSR 167
            S  R   P    +N  A      + +    + S S+ +  I  G+  +  TP+   L  + + ++VDK+ L+ L+SQY+ C GC AAVK LL+RPL ELRLLNAVMAD PS   LLLRE F+QNPSR
Sbjct:   33 SSRRTDLPPSSFENVAAKKKNVNARKKSHGLFSQSTDSKMITPGTKDDNGTPTNTGLAASGQAILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVMADGPSSTTLLLREQFMQNPSR 159
The following BLAST results are available for this feature:
BLAST of NO04G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28537.11.500e-1344.09hypothetical protein Naga_100009g52 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01670NO04G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01670.1NO04G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01670.1.cds1NO04G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01670.1 ID=NO04G01670.1|Name=NO04G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
ATGTCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTA
TGGCCATTACCACCAGCCACATCGTTCCAGGGAGTCCTCTTCGGGGGGGA
GGTCTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCA
GGAAAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGC
TCAGGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCG
CTAAAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGG
CGCGGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATA
CACAGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTC
CTTTGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCT
CAAAACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGAC
CATCCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCC
AATCCCATGGAGCCAGTGGCCGATGTCCCGTACATCGTCGAGCAGGGTCG
TCGGCGGTGATTCATCATAGAAGCAGCATCAGCAGCAGCAGCAGCAGCAG
TAACAGTAACAATGGTTGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGA
GGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGA
TAG
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protein sequence of NO04G01670.1

>NO04G01670.1-protein ID=NO04G01670.1-protein|Name=NO04G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSSSAAPDPTSCSHSHYGHYHQPHRSRESSSGGRSSPGDGRASKLRESAP
GKGPQNSQAITSTYTSAQDGRSIASTSSKACGIAKGSTSNTPSFDLDLAR
RGVVVDKAHLMRLASQYTACTGCSAAVKALLARPLHELRLLNAVMADDPS
QNALLLREPFLQNPSRTIQLVNRFPLPPVPKKVQSHGASGRCPVHRRAGS
SAVIHHRSSISSSSSSSNSNNGWGGGWMESGSGRKPGKGYLQKRKKRWPR
*
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mRNA from alignment at chr4:502197..502949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01670.1 ID=NO04G01670.1|Name=NO04G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at chr4:502197..502949- (Nannochloropsis oceanica)
ATGTCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTA
TGGCCATTACCACCAGCCACATCGTTCCAGGGAGTCCTCTTCGGGGGGGA
GGTCTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCA
GGAAAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGC
TCAGGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCG
CTAAAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGG
CGCGGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATA
CACAGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTC
CTTTGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCT
CAAAACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGAC
CATCCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCC
AATCCCATGGAGCCAGTGGCCGATGTCCCGTACATCGTCGAGCAGGGTCG
TCGGCGGTGATTCATCATAGAAGCAGCATCAGCAGCAGCAGCAGCAGCAG
TAACAGTAACAATGGTTGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGA
GGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGA
TAG
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Coding sequence (CDS) from alignment at chr4:502197..502949-

>NO04G01670.1 ID=NO04G01670.1|Name=NO04G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr4:502197..502949- (Nannochloropsis oceanica)
ATGTCCTCGTCCGCCGCGCCCGACCCCACGTCTTGCAGTCACAGCCATTA
TGGCCATTACCACCAGCCACATCGTTCCAGGGAGTCCTCTTCGGGGGGGA
GGTCTTCACCTGGGGATGGAAGGGCAAGCAAGCTGAGGGAAAGTGCTCCA
GGAAAGGGGCCGCAAAACTCCCAGGCCATTACTAGCACTTATACTAGCGC
TCAGGACGGAAGATCGATAGCTTCCACTTCCTCCAAGGCATGCGGCATCG
CTAAAGGTAGCACTAGCAATACCCCGAGCTTTGACCTGGATCTAGCACGG
CGCGGCGTCGTAGTGGATAAGGCCCATTTAATGCGCCTCGCCTCCCAATA
CACAGCTTGCACCGGGTGCTCCGCCGCAGTCAAAGCCCTCCTCGCCCGTC
CTTTGCATGAACTCCGCCTCCTGAATGCCGTGATGGCCGATGACCCTTCT
CAAAACGCTCTTTTGCTTCGAGAGCCATTCCTACAAAACCCCTCACGGAC
CATCCAGCTTGTCAATCGCTTCCCCCTCCCCCCTGTGCCTAAGAAAGTCC
AATCCCATGGAGCCAGTGGCCGATGTCCCGTACATCGTCGAGCAGGGTCG
TCGGCGGTGATTCATCATAGAAGCAGCATCAGCAGCAGCAGCAGCAGCAG
TAACAGTAACAATGGTTGGGGGGGGGGATGGATGGAGTCTGGAAGTGGGA
GGAAGCCTGGGAAAGGTTACCTGCAGAAGCGAAAGAAAAGGTGGCCACGA
TAG
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Synonyms
Publications