NO04G01590, NO04G01590 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01590 vs. NCBI_GenBank
Match: PIN15859.1 (Molecular chaperone of the GrpE family [Handroanthus impetiginosus]) HSP 1 Score: 65.1 bits (157), Expect = 5.700e-7 Identity = 49/160 (30.63%), Postives = 83/160 (51.88%), Query Frame = 0 Query: 212 LAKKRNELTEAQDRLK---TVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKE--DAVVVEVAVKGYRIGDTVVRRARVKVSA 367 L K++NELT+ L + GKE Y+RL A+ + Y++R VR +A E +E LLP++D E + + + E K+ Y+ + + FV L + A+P A G FD E +E + ++++ +G+ +GD ++R A VKVS+ Sbjct: 132 LEKEKNELTQKVSTLSEEISSGKEKYVRLQADFDNYRKRSEKERLTVRSDAQGEVIESLLPMVDSFERAK-QQIKLETEEEKKIDASYQGIYKQFVEIMRSLRVAAVP-AVGKPFDPSIHEAIAREESQEFKEGIIIQEFRRGFHLGDRLLRPAMVKVSS 289
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_107138224.1 (nucleotide exchange factor GrpE [Deinococcus sp. OD32] >PTA67684.1 nucleotide exchange factor GrpE [Deinococcus sp. OD32]) HSP 1 Score: 65.1 bits (157), Expect = 5.700e-7 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0 Query: 236 RLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEAS--LKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366 RLAA+ E+Y+RR D + + + +A E L+PV D ++ VT A+ K++ G + +Q +G LG++A G+AFD + E ++V G ED V+V+V G+R+GD +VR ARV VS Sbjct: 84 RLAADFESYRRRTQDDVQAAQGQGVSKAAEALMPVYDDLDR------AVTMGAADPAKLIPGMQAVQGKVLGVFAGLGLEA-TGKEGEAFDPQWHEALQVVPGDEDDVIVQVYQLGFRMGDRLVRPARVVVS 208
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_024284616.1 (nucleotide exchange factor GrpE [Algoriphagus marincola] >KPQ16304.1 molecular chaperone GrpE [Algoriphagus marincola HL-49]) HSP 1 Score: 64.7 bits (156), Expect = 7.500e-7 Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 0 Query: 212 LAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASL-KVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME-ISEMVVGKED--AVVVEVAVKGYRIGDTVVRRARVKVSA 367 LAK + EL E +D+ Y+RL ++ E +++R A + + A++E + L+PV+D + E + NE+ +V G + Q FV E G+K + G FD ET E I+++ E+ V++V KGY +GD VVR A+V A Sbjct: 45 LAKMQGELAEMKDK--------YLRLYSDFENFRKRNAKERLDLIKTASEEVLRDLIPVVD---DFERAFKASENESDAGRVREGNHLIFQKFVKVLESKGLKVMEDQIGHPFDAETQEAITQIPAPSEEMKGKVIDVVEKGYTLGDKVVRYAKVVTGA 192
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_011531197.1 (nucleotide exchange factor GrpE [Deinococcus geothermalis] >ABF46371.1 GrpE protein [Deinococcus geothermalis DSM 11300]) HSP 1 Score: 64.3 bits (155), Expect = 9.800e-7 Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 0 Query: 218 ELTEAQDRLKTVG---------KEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366 ++ E RL+ VG K RLAA+ E+Y+RR + + + +A E+L+PV D +E + +++ K++ G +Q + +LG++A G+ FD E ++V G+ED V+V+V G+R+GD +VR ARV VS Sbjct: 64 QVQEMMARLERVGELEQENADLKNKLGRLAADFESYRRRTQEDVAAAEGQGVAKAAERLMPVYDDLE----RALSMSSSEPAKLIPGVEAVQSTVLRIFGQLGLEA-TGKPGEPFDPRWHEAVQVVSGEEDDVIVQVYQLGFRMGDRLVRPARVVVS 215
BLAST of NO04G01590 vs. NCBI_GenBank
Match: XP_018731972.1 (PREDICTED: uncharacterized protein LOC104450968 [Eucalyptus grandis] >KCW71297.1 hypothetical protein EUGRSUZ_F04384 [Eucalyptus grandis]) HSP 1 Score: 64.3 bits (155), Expect = 9.800e-7 Identity = 49/160 (30.63%), Postives = 83/160 (51.88%), Query Frame = 0 Query: 216 RNELTEAQDRLK---TVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDA------VVVEVAVKGYRIGDTVVRRARVKVSA 367 R +L E L T GKE Y+RL A+ + Y++R + A +E +E LLP++D E + + T+E K+ Y+ + + FV L + A+ A+ G FD + +G+E++ +V++ +G+R+GD V+R A+VKVSA Sbjct: 136 RKQLVEQVSTLSEEMTSGKENYIRLQADFDNYRKRSEKERLTISSNAQRELIESLLPMVDNFERAKQQIKPETDEEK-KIDASYQGIYKQFVEVMRSLHVSAI-ASLGKPFD----PLQHEAIGREESQEFREGIVIQEIRRGFRLGDRVLRPAKVKVSA 289 The following BLAST results are available for this feature:
BLAST of NO04G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 15
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01590 ID=NO04G01590|Name=NO04G01590|organism=Nannochloropsis oceanica|type=gene|length=1734bpback to top protein sequence of NO04G01590.1 >NO04G01590.1-protein ID=NO04G01590.1-protein|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bpback to top Synonyms
Publications
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