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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:481024..482757 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01590.1 vs.
Match: EWM28579.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 332.8 bits (852), Expect = 1.500e-87 Identity = 229/392 (58.42%), Postives = 273/392 (69.64%), Query Frame = 0
Query: 1 MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALDRVVQHQRVVSTGG---LPTSTVRMMASSSSSSSSSSSSSFSCLRNSRRTCSGAGAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGEEEEAKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAALKAELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKE 390
M R P+AATA+ CL VALWS P MAW YL P ST GS S A+ R VVS + +S+ RM A++SS ++ R T + +C + C C+CA R A+ R SRRTRLWA A+D EEE +++GKK DE E+ V+AEE + E + EEE E LSPE+Q KAAL+AELK+LE LAKKRNELTEAQDRLKTVGKEG+MRLAAEVETYKRRRADGLTYVREEAA+E M+QLLPV DLMEELE +YA V++EASLKVLNGY+NL QVFVGKAERLG+K L AAGDA+D E+ME+ E+VVG+ D VVVEV KGY+IG+ V RRARVKVSATE T++KA+EEEKEEE E KE
Sbjct: 1 MRRIPKAATAVSCCL---VALWSYPTMAWTYLAPR-STIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTV----------RSTINQKSEQCK---YACTSLCNCATRKRAVLRPSRRTRLWAT---------AQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSATEATLQKAKEEEKEEEGDSEAKE 366
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGCCGTGGTGGCCTT GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT CGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG GGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGCTGCGGCAGGTGA TGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGGTGGTTGGGAAAG AGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTATAGAATCGGCGAT ACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCACTGAGGAGACGAT GAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGAAGGGGGAGGAGA AGGAGGCGGAGGCGGGGAGTTTGGAGGAGGAGGGGAAGCAGTAGAGGTGA TGAGATGTAGAGGAAAGGTGTGGTTTCTATGTTTTTGTGTGGGTGGACGG GAGGGATGGAAGGCGAGAGGAAGGGAAGGAGCGGCTCGAGAGTGGATCGA GATTCTTCCCTTTTCTGCCTACCCACACCAACACTCACATGCGCGTGCAA TCAAGACACACACACGGACACACATTAAAAGATTAAGGAAATTTTTCATA AAAGAAATGACTC back to topprotein sequence of NO04G01590.1 >NO04G01590.1-protein ID=NO04G01590.1-protein|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALD RVVQHQRVVSTGGLPTSTVRMMASSSSSSSSSSSSSFSCLRNSRRTCSGA GAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGAEDGE EEEAKKGKKGKDEEEEEAVSAEETQEEEEVVEEEEEAKEHLSPEEQEKAA LKAELKDLEAALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRAD GLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQ QVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGY RIGDTVVRRARVKVSATEETMKKAQEEEKEEEEKGEEKEAEAGSLEEEGK Q* back to topmRNA from alignment at chr4:481024..482757+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr4:481024..482757+ (Nannochloropsis oceanica) ACAGGCTTCAAGCAAGCAGCCACTTCATCATCGTCATCATGCATCGCACC
CCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGCCGTGGTGGCCTT
GTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCCCGTCGCCTTCGA
CTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGACAGGGTCGTGCAG
CACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAGCACAGTCAGAAT
GATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCT
CGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCCGGGGCAGAATGT
GGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTGTGCTAAGAGGCC
CCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGTGGGCAGCAGCAG
GGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAGGAAGAGGAAGCG
AAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGAGGCAGTATCAGC
AGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGGAGGAGGAGGCCA
AGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCGCTCAAGGCAGAA
TTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAATGAGCTGACCGA
GGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCTATATGCGTTTGG
CCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGATGGCTTGACCTAT
GTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCTCTTGCCTGTGTT
GGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGGTGACAAATGAGG
CATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAGCAGGTGTTCGTG
GGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGCTGGTGAGTGAGG
AAGGGAGGGAAGGAGGAATGGATGGCGGGATATTTGTAAATGGCGGGAGG
GGACAGAGCCAGACGTGCGGTGATGTGGATGATGAATAGGATAATGATGC
ATGTATTGTCTCAGACTATGGTCCATGCCGAAACTATCACCTTGGAGAAC
TGACACACACACACACCTACCCTCCCTCCCTCCCTCCCTTCCTCGCTCGA
CCTTCGAATGTACCTCTTCTCTCACCCTCTCTCTCCTTTGTACACATGAA
AAACAACACAGCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAA
GTGAGATGGTGGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTG
AAGGGGTATAGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGT
CAGTGCCACTGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGG
AAGAGGAGAAGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTGGAGGAG
GAGGGGAAGCAGTAGAGGTGATGAGATGTAGAGGAAAGGTGTGGTTTCTA
TGTTTTTGTGTGGGTGGACGGGAGGGATGGAAGGCGAGAGGAAGGGAAGG
AGCGGCTCGAGAGTGGATCGAGATTCTTCCCTTTTCTGCCTACCCACACC
AACACTCACATGCGCGTGCAATCAAGACACACACACGGACACACATTAAA
AGATTAAGGAAATTTTTCATAAAAGAAATGACTC back to topCoding sequence (CDS) from alignment at chr4:481024..482757+ >NO04G01590.1 ID=NO04G01590.1|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr4:481024..482757+ (Nannochloropsis oceanica) ATGCATCGCACCCCGCAAGCCGCAACAGCCATGTTGATGTGCCTTTGTGC CGTGGTGGCCTTGTGGTCGTGCCCGGCGATGGCGTGGGCGTACCTGGTCC CGTCGCCTTCGACTACCGGCTCACGTACCACCAGCAGCAGCGCGTTGGAC AGGGTCGTGCAGCACCAAAGAGTCGTGTCGACAGGCGGCCTTCCTACCAG CACAGTCAGAATGATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTTCTCGTGCTTGCGCAATTCCCGACGCACTTGCAGCGGTGCC GGGGCAGAATGTGGTGAGAGCATACACGTTTGCAACCCGTGGTGCGACTG TGCTAAGAGGCCCCACGCTCTGTCAAGGCAAAGTCGTCGCACTCGACTGT GGGCAGCAGCAGGGGAAGGAGACGAGTCAACTGGGGCCGAGGATGGGGAG GAAGAGGAAGCGAAGAAGGGGAAGAAAGGAAAAGATGAGGAGGAAGAAGA GGCAGTATCAGCAGAGGAAACCCAGGAGGAGGAAGAGGTGGTGGAGGAGG AGGAGGAGGCCAAGGAGCATCTTTCCCCAGAAGAGCAAGAGAAGGCAGCG CTCAAGGCAGAATTGAAGGACTTGGAAGCCGCCTTGGCTAAGAAGCGGAA TGAGCTGACCGAGGCGCAGGATAGGTTAAAAACAGTGGGCAAAGAGGGCT ATATGCGTTTGGCCGCGGAAGTAGAAACCTACAAGCGTCGTCGTGCGGAT GGCTTGACCTATGTGAGGGAAGAGGCAGCAAAGGAAGCGATGGAGCAGCT CTTGCCTGTGTTGGACCTAATGGAGGAGCTGGAGATTAAATACGCGGGGG TGACAAATGAGGCATCCTTGAAGGTATTGAACGGTTACAGGAATCTGCAG CAGGTGTTCGTGGGTAAGGCGGAACGGTTGGGGATAAAGGCATTGCCGGC TGCGGCAGGTGATGCGTTTGACGGAGAGACGATGGAGATAAGTGAGATGG TGGTTGGGAAAGAGGACGCGGTGGTGGTGGAGGTGGCGGTGAAGGGGTAT AGAATCGGCGATACGGTGGTGAGGCGGGCGAGGGTGAAGGTCAGTGCCAC TGAGGAGACGATGAAGAAGGCTCAAGAGGAGGAGAAAGAGGAAGAGGAGA AGGGGGAGGAGAAGGAGGCGGAGGCGGGGAGTTTGGAGGAGGAGGGGAAG CAGTAG back to top
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