NO04G01590, NO04G01590 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01590 vs. NCBI_GenBank
Match: EWM28579.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 268.5 bits (685), Expect = 3.400e-68 Identity = 206/367 (56.13%), Postives = 230/367 (62.67%), Query Frame = 0 Query: 1 MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALDRVVQHQRVVSTGGLPTXXXXXXXXXXXXXXXXXXXXXXCLRNSRRTCSGAGAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSAT 368 M R P+AATA+ CL VALWS P MAW YL P ST GS S A+ R VVS + C + C C+CA R A+ R SRRTRLWA A + +E XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX LAKKRNELTEAQDRLKTVGKEG+MRLAAEVETYKRRRADGLTYVREEAA+E M+QLLPV DLMEELE +YA V++EASLKVLNGY+NL QVFVGKAERLG+K L AAGDA+D E+ME+ E+VVG+ D VVVEV KGY+IG+ V RRARVKVSAT Sbjct: 1 MRRIPKAATAVSCCL---VALWSYPTMAWTYLAPR-STIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCK----------YACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEE---------GXXXXXXXXDETEDMDVAAEEGEGVXXXXXXXXXXXXXXXXXXXXXXXXRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSAT 344
BLAST of NO04G01590 vs. NCBI_GenBank
Match: XP_005854875.1 (GrpE, partial [Nannochloropsis gaditana CCMP526] >EKU21483.1 GrpE, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 229.6 bits (584), Expect = 1.800e-56 Identity = 121/151 (80.13%), Postives = 135/151 (89.40%), Query Frame = 0 Query: 217 NELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSAT 368 NELTEAQDRLKTVGKEG+MRLAAEVETYKRRRADGLTYVREEAA+E M+QLLPV DLMEELE +YA VT+EASLKVLNGY+NL QVFVGKAERLG+K L AAGDA+D E+ME+ E+VVG+ D VVVEV KGY+IG+ V RRARVKVSAT Sbjct: 119 NELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVTSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIAAGDAYDEESMEVGEVVVGEADGVVVEVEQKGYQIGERVARRARVKVSAT 269
BLAST of NO04G01590 vs. NCBI_GenBank
Match: EWM28580.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 205.7 bits (522), Expect = 2.700e-49 Identity = 171/315 (54.29%), Postives = 188/315 (59.68%), Query Frame = 0 Query: 1 MHRTPQAATAMLMCLCAVVALWSCPAMAWAYLVPSPSTTGSRTTSSSALDRVVQHQRVVSTGGLPTXXXXXXXXXXXXXXXXXXXXXXCLRNSRRTCSGAGAECGESIHVCNPWCDCAKRPHALSRQSRRTRLWAAAGEGDESTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKAL 316 M R P+AATA+ CL VALWS P MAW YL P ST GS S A+ R VVS + C + C C+CA R A+ R SRRTRLWA A + +E XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX LAKKRNELTEAQDRLKTVGKEG+MRLAAEVETYKRRRADGLTYVREEAA+E M+QLLPV DLMEELE +YA V++EASLKVLNGY+NL QVFVGKAERLG+K L Sbjct: 1 MRRIPKAATAVSCCL---VALWSYPTMAWTYLAPR-STIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCK----------YACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEE---------GXXXXXXXXDETEDMDVAAEEGEGVXXXXXXXXXXXXXXXXXXXXXXXXRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVL 292
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_013458511.1 (nucleotide exchange factor GrpE [Oceanithermus profundus] >ADR37341.1 GrpE protein [Oceanithermus profundus DSM 14977]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0 Query: 231 KEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSATEE 370 K+ YMRL A+ + Y++R + R++ +A+ LLPVLD +E +++AG EA V G R + Q F LG++ +P G+ F+ E +V G+ED V +V KGYR G+ ++R ARV V+ +E Sbjct: 53 KDKYMRLLADFDNYRKRMQAEVEAARKDGEIKAIRALLPVLDDLER-ALEHAGAKPEA---VAEGVRAVHQGFQRILSGLGVEPVP-GEGEPFNPSVHEAVGIVEGEEDEKVAQVYQKGYRYGEQLIRPARVAVTKKKE 186
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_035484387.1 (nucleotide exchange factor GrpE [Algoriphagus marincola]) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7 Identity = 52/159 (32.70%), Postives = 82/159 (51.57%), Query Frame = 0 Query: 212 LAKKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASL-KVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME-ISEMVVGKED--AVVVEVAVKGYRIGDTVVRRARVKVSA 367 LAK + EL E +D+ Y+RL ++ E +++R A + + A++E + L+PV+D + E + NE+ KV G + Q FV E G+K + G FD ET E I+++ E+ V++V KGY +GD VVR A+V A Sbjct: 45 LAKMQGELAEMKDK--------YLRLYSDFENFRKRNAKERLDLIKTASEEVLRDLIPVVD---DFERAFKASENESDAGKVREGNHLIFQKFVNVLESKGLKVMEDQIGHPFDAETQEAITQIPAPSEEMKGKVIDVVEKGYTLGDKVVRYAKVVTGA 192
BLAST of NO04G01590 vs. NCBI_GenBank
Match: PIS34648.1 (nucleotide exchange factor GrpE [Parcubacteria group bacterium CG08_land_8_20_14_0_20_43_9]) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7 Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 0 Query: 214 KKRNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366 K+R ++ E +DR G+ R A+ YK+ +A+ + + ++ + +LL LDL E E G N VL G+ +++ F ++ G++ + + F+ E++E V G+E+ ++ EV KGY+IG+ V+R A+VKVS Sbjct: 19 KERKQMKEERDRYLA----GWQRSQADFLNYKKEQAERFQKMVKYEKEKWILELLDALDLFERAEKTNQGAENPV---VLAGFLQIKKYFEDFLKKHGVQEIVSEPDKKFNPRFEEVAETVEGEEEGIIAEVVRKGYQIGEKVIRPAKVKVS 163
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_019588767.1 (nucleotide exchange factor GrpE [Deinococcus apachensis]) HSP 1 Score: 66.2 bits (160), Expect = 2.600e-7 Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 0 Query: 216 RNELTEAQDRLKTVGKEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETMEISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVS 366 R E E +R T K RLAA+ E+Y+RR + + +++ +A EQL+PV D ++ + + + K++ G + +Q + LG++A G+ FD + E ++V G ED V+V+V G+R+GD +VR ARV VS Sbjct: 64 RLERAEELERENTDLKGKLGRLAADFESYRRRTQEDVQAAQQQGVAKAAEQLMPVYDDLD----RAVSMGSNDPAKLIPGVQAVQATVLRVFSGLGLEA-TGREGEHFDPQWHEALQVVPGDEDDVIVQVYQPGFRMGDRLVRPARVVVS 208
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_053977018.1 (MULTISPECIES: nucleotide exchange factor GrpE [Mangrovimonas] >OMP30515.1 nucleotide exchange factor GrpE [Mangrovimonas sp. DI 80]) HSP 1 Score: 65.9 bits (159), Expect = 3.400e-7 Identity = 41/137 (29.93%), Postives = 78/137 (56.93%), Query Frame = 0 Query: 231 KEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME-ISEMVVGKED--AVVVEVAVKGYRIGDTVVRRARVKV 365 K+ +MRL AE E YKRR + + + A+++ M+ +LPVLD + + Y+ ++ + +L G ++Q ++ G+ + AAGDAF+ + E ++++ ED +++V KGY++GD V+R +V + Sbjct: 48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKAMLPVLD---DFDRAYSEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVAAGDAFNADDHEAVTQIPAPNEDLKGKIIDVIEKGYKLGDKVIRFPKVVI 181
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_053992171.1 (nucleotide exchange factor GrpE [Mangrovimonas sp. TPBH4]) HSP 1 Score: 65.5 bits (158), Expect = 4.400e-7 Identity = 40/137 (29.20%), Postives = 77/137 (56.20%), Query Frame = 0 Query: 231 KEGYMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME-ISEMVVGKED--AVVVEVAVKGYRIGDTVVRRARVKV 365 K+ +MRL AE E YKRR + + + A+++ M+ +LPVLD + + YA ++ + +L G ++Q ++ G+ + AGDAF+ + E ++++ ED +++V KGY++GD ++R +V + Sbjct: 48 KDKFMRLFAEFENYKRRTSKERVELFKTASEDVMKSMLPVLD---DFDRAYAEISKSDAEDLLKGVELIRQKLKSTLQQKGLSEIEVTAGDAFNADDHEAVTQIPAPSEDLKGKIIDVIEKGYKLGDKIIRFPKVVI 181
BLAST of NO04G01590 vs. NCBI_GenBank
Match: WP_039727327.1 (nucleotide exchange factor GrpE [Lyngbya confervoides] >KIF15306.1 hypothetical protein QP59_33220 [Aphanocapsa montana BDHKU210001] >KIF41887.1 hypothetical protein QQ91_26110 [Lyngbya confervoides BDU141951]) HSP 1 Score: 65.1 bits (157), Expect = 5.700e-7 Identity = 46/138 (33.33%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 234 YMRLAAEVETYKRRRADGLTYVREEAAKEAMEQLLPVLDLMEELEIKYAGVTNEASLKVLNGYRNLQQVFVGKAERLGIKALPAAAGDAFDGETME--ISEMVVGKEDAVVVEVAVKGYRIGDTVVRRARVKVSATEE 370 YMR+AA+ E Y+RR + + + + +LLPV+D E + T EA + + Y+++ + V +RLG+ A+ A G FD E + E + V+E V+GY IGD V+R A VKV+A E Sbjct: 96 YMRIAADFENYRRRNSKERDEQEVQIKRNTITELLPVIDNFERARAQIKPQT-EAEMTIHKSYQSVYKQLVDCLKRLGVSAM-RAEGQEFDPNLHEAVMREPTADHPEGTVMEELVRGYMIGDRVLRHAMVKVAAEPE 231 The following BLAST results are available for this feature:
BLAST of NO04G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 15 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01590 ID=NO04G01590|Name=NO04G01590|organism=Nannochloropsis oceanica|type=gene|length=1734bpback to top protein sequence of NO04G01590.1 >NO04G01590.1-protein ID=NO04G01590.1-protein|Name=NO04G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bpback to top Synonyms
Publications
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