NO04G01560, NO04G01560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01560 vs. NCBI_GenBank
Match: EWM28589.1 (g patch domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 255.0 bits (650), Expect = 4.000e-64 Identity = 169/366 (46.17%), Postives = 201/366 (54.92%), Query Frame = 0 Query: 65 GHYGPATRHPPQXXXXXXXRLPCPPYVMAGFVRGKARYADEQVDEERQADQPSNRTSTSATTPNDECPSALYAALTARPAEGPEVMVLENDEVEILPTRKRRR--CAQGADPP-----THAADVT------ILFNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-------SIPVFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIELWARDGRAMAQGRAXXXXXXXXXVTFGEVGRCETARERERRLRKEKETRARIIADLNGE 411 GHYGP T P M FVRGK RYAD + D + + ++R +D CPS LYA L ARP E P+V +L ++++ ILPTRKRRR C + P T A+ +T I N + +I FDC++C ER+TSTD+ATHERSTLHTFNA+K S RI+LPESNRGVQLLARLGWK+D GLGK+ QG +QP KSILKLDRT LGH PARVTHFPSH A QAARA DGKS AQRKVEE+E +GRA A+ V + RCETAR R RRL KEKE+ +RI A LN E Sbjct: 39 GHYGPQTSKYTSFQ-------PHRAIPMISFVRGKTRYADPK-DVDGDFNHDNDRHPAPGPASDDVCPSTLYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATAASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVDEDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAR---------EGFVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE 387
BLAST of NO04G01560 vs. NCBI_GenBank
Match: CBJ33494.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 115.2 bits (287), Expect = 4.900e-22 Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 0 Query: 231 FDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIE 352 F C +C ER+ S + H STLH FN Q R++ + ESN+G QLLA +GWK D+GLG QGR+ P ++ K D TGLG +L RVTHFPSH QA A DGKS+A R E ++ Sbjct: 105 FFCRVCGERVASLSEEKHNTSTLHIFNQQHRPQGRKVQIHESNKGFQLLAGMGWKLDEGLGSRKQGRVNPLQTTFKRDTTGLGAGGKLRPRVTHFPSHVPSQALNAPDGKSDAVRAHERLD 225
BLAST of NO04G01560 vs. NCBI_GenBank
Match: ETP24437.1 (hypothetical protein F441_02570 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 109.0 bits (271), Expect = 3.500e-20 Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG QLL +GW+D+ GLG G G++ P + K DR G+G AR+THFPSH +QA AVDG+SEAQR + + Sbjct: 1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPSHDEQQARMAVDGRSEAQRMQDRL 122
BLAST of NO04G01560 vs. NCBI_GenBank
Match: XP_008899855.1 (hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >ETI54603.1 hypothetical protein F443_02612 [Phytophthora parasitica P1569] >ETK94463.1 hypothetical protein L915_02495 [Phytophthora parasitica] >ETL47840.1 hypothetical protein L916_02466 [Phytophthora parasitica] >ETM00950.1 hypothetical protein L917_02395 [Phytophthora parasitica] >ETN15279.1 hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >ETO83357.1 hypothetical protein F444_02612 [Phytophthora parasitica P1976] >ETP52391.1 hypothetical protein F442_02588 [Phytophthora parasitica P10297] >KUF89037.1 hypothetical protein AM588_10002125 [Phytophthora nicotianae]) HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG QLL +GW+D+ GLG G G++ P + K DR G+G AR+THFP+H +QA AVDG+SEAQR + + Sbjct: 1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 122
BLAST of NO04G01560 vs. NCBI_GenBank
Match: KUF80071.1 (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae]) HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG QLL +GW+D+ GLG G G++ P + K DR G+G AR+THFP+H +QA AVDG+SEAQR + + Sbjct: 450 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 571
BLAST of NO04G01560 vs. NCBI_GenBank
Match: KUF96727.1 (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae]) HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG QLL +GW+D+ GLG G G++ P + K DR G+G AR+THFP+H +QA AVDG+SEAQR + + Sbjct: 450 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 571
BLAST of NO04G01560 vs. NCBI_GenBank
Match: ETM54125.1 (hypothetical protein L914_02489, partial [Phytophthora parasitica]) HSP 1 Score: 107.5 bits (267), Expect = 1.000e-19 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG QLL +GW+D+ GLG G G++ P + K DR G+G AR+THFP+H +QA AVDG+SEAQR + + Sbjct: 1 MYFCASCNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 122
BLAST of NO04G01560 vs. NCBI_GenBank
Match: XP_002997103.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69691.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19 Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIEL 353 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG Q+L +GW+++ GLG G G++ P +I K DR G+G + ARVTHFP+H +QA A DG+SEAQR + + L Sbjct: 1 MYFCAACNVYVKDSCVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQMLKSMGWQENGGLGPTGDGKVTPIATIFKTDRAGVGVQSTAKQARVTHFPAHDEQQATMAADGRSEAQRTQDRLAL 124
BLAST of NO04G01560 vs. NCBI_GenBank
Match: GAY02519.1 (replication factor C subunit 3 [Pythium insidiosum]) HSP 1 Score: 104.4 bits (259), Expect = 8.700e-19 Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0 Query: 236 CQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQR 346 C + T H++S HT ++ ++ S++++ LPESNRG QLL +GW+ D GLG+ GRM+P ++LK DR GLG P RVTHFP H +Q A DG SEAQR Sbjct: 602 CNLYVHDTTVEDHDQSLAHTLSSTRAPSLKKVWLPESNRGYQLLLNMGWQQDSGLGRRNDGRMEPIATVLKTDRAGLGMPGPTP-RVTHFPPHDEQQQRAASDGLSEAQR 710
BLAST of NO04G01560 vs. NCBI_GenBank
Match: POM79883.1 (G patch domain containing protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 104.4 bits (259), Expect = 8.700e-19 Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0 Query: 230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIELWARDGRAMAQ 363 ++ C C + + A H+++T H ++ K S+R++ LPE+NRG Q+L +GW++ GLG +G G++ P + K DR G+G T RVTHFP+H +QA A DG+SEAQR + + AR +A Q Sbjct: 1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQMLKSMGWQETGGLGPSGDGKVTPIATTFKTDRAGVGIQTTTKQTRVTHFPAHDEQQARMAADGRSEAQRMQDRL---ARKRKASQQ 131 The following BLAST results are available for this feature:
BLAST of NO04G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01560 ID=NO04G01560|Name=NO04G01560|organism=Nannochloropsis oceanica|type=gene|length=1233bpback to top protein sequence of NO04G01560.1 >NO04G01560.1-protein ID=NO04G01560.1-protein|Name=NO04G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bpback to top Synonyms
Publications
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