NO04G01540, NO04G01540 (gene) Nannochloropsis oceanica

Overview
NameNO04G01540
Unique NameNO04G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length821
Alignment locationchr4:472482..473302 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:472482..473302 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G01540 vs. NCBI_GenBank
Match: EWM28524.1 (hypothetical protein Naga_100009g38 [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 1.500e-21
Identity = 83/209 (39.71%), Postives = 105/209 (50.24%), Query Frame = 0 
Query:   19 MDDAAFEAFASCRFQEAARLAAEELAQAKPHQDDSQAD---MLKRPTQGVPLPCSLLDGFLEKEGGKTCILVELHEHCARSD-----------------------------KLAAILVQCAYELKHEAEESLFVQHYAAQGSIPFPVALIWLQVCLAKGETHCSTVRRVLMQLLVALEKKDEELLQLSDLSNLEKEESQSS--AHQLGG 194
            MDD AFEAFASCRF +AARLAA ELA     Q D + D    +    +   LPC+  +   +    +  IL+ L EHC R D                              + +IL+QCA+ELK E +E LF++HY  Q +IP PVALIWL+VCL KG      VRR + QLL AL    E  L L +  N  K  S+ S  +H L G
Sbjct:    1 MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDESTFLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRLCAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALIWLRVCLTKGRFWNEAVRRAVTQLLAALH--TEIHLMLPNGINGTKSPSKVSEFSHPLEG 207
The following BLAST results are available for this feature:
BLAST of NO04G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28524.11.500e-2139.71hypothetical protein Naga_100009g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01540.1NO04G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100009g38gene2027Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01540.1NO04G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01540 ID=NO04G01540|Name=NO04G01540|organism=Nannochloropsis oceanica|type=gene|length=821bp
ATGACAGCGGCGTCCCCAGCACCATATCCACTACAAGCAGTGCCTGCATT
CATCATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAG
AGGCGGCTCGATTGGCAGCAGAAGAACTGGCCCAGGCGAAGCCTCATCAG
GACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCT
GCCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACAT
GCATCCTCGTTGAGCTACATGAGCACTGTGCGAGgtagggtgcaaatcgg
cagggttccaaaatatgagctaaatcccctctccttcataactacccttc
cctcacccctactcctgtccaggacataacaaatagcttgttcgccatct
catgcatatttcccctctttgtccttaacatcctttttctggtcagGTCG
GACAAGCTCGCCGCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGA
AGCCGAGGAAAGCCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCC
CCTTTCCCGTGGCATTGATATGgtacgttagacagcatgtcttgttgaag
cggagatttcgggtcattgacattatcctcctcctcctcacagGCTTCAA
GTCTGCCTCGCCAAGGGCGAGACGCACTGTAGCACTGTTCGGCGAGTGTT
AATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGATGAAGAGCTGCTGCAGT
TGTCAGATCTAAGTAATTTGGAAAAAGAAGAATCGCAGTCCTCGGCGCAC
CAACTGGGGGGGGAGGAGTAA
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protein sequence of NO04G01540.1

>NO04G01540.1-protein ID=NO04G01540.1-protein|Name=NO04G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MTAASPAPYPLQAVPAFIMDDAAFEAFASCRFQEAARLAAEELAQAKPHQ
DDSQADMLKRPTQGVPLPCSLLDGFLEKEGGKTCILVELHEHCARSDKLA
AILVQCAYELKHEAEESLFVQHYAAQGSIPFPVALIWLQVCLAKGETHCS
TVRRVLMQLLVALEKKDEELLQLSDLSNLEKEESQSSAHQLGGEE*
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Synonyms
Publications