NO04G01540.1, NO04G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01540.1
Unique NameNO04G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr4:472482..473302 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:472482..473302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01540.1 vs.
Match: EWM28524.1 (hypothetical protein Naga_100009g38 [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 1.500e-21
Identity = 83/209 (39.71%), Postives = 105/209 (50.24%), Query Frame = 0 
Query:   19 MDDAAFEAFASCRFQEAARLAAEELAQAKPHQDDSQADM---LKRPTQGVPLPCSLLDGFLEKEGGKTCILVELHEHCARSD-----------------------------KLAAILVQCAYELKHEAEESLFVQHYAAQGSIPFPVALIWLQVCLAKGETHCSTVRRVLMQLLVALEKKDEELLQLSDLSNLEKEESQSS--AHQLGG 194
            MDD AFEAFASCRF +AARLAA ELA     Q D + D    +    +   LPC+  +   +    +  IL+ L EHC R D                              + +IL+QCA+ELK E +E LF++HY  Q +IP PVALIWL+VCL KG      VRR + QLL AL    E  L L +  N  K  S+ S  +H L G
Sbjct:    1 MDDGAFEAFASCRFGDAARLAAAELASQGKEQLDRKEDSPFSMNARDESTFLPCAPWNWEGDGRTDERRILIRLEEHCRRQDFPGESETAESELIVRSRLCAFLAQRFILVAMLSILLQCAFELKEEEQERLFIKHYTTQKNIPLPVALIWLRVCLTKGRFWNEAVRRAVTQLLAALH--TEIHLMLPNGINGTKSPSKVSEFSHPLEG 207
The following BLAST results are available for this feature:
BLAST of NO04G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28524.11.500e-2139.71hypothetical protein Naga_100009g38 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01540NO04G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01540.1NO04G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01540.1.cds1NO04G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01540.1.cds2NO04G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01540.1.cds3NO04G01540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01540.1 ID=NO04G01540.1|Name=NO04G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGACAGCGGCGTCCCCAGCACCATATCCACTACAAGCAGTGCCTGCATT
CATCATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAG
AGGCGGCTCGATTGGCAGCAGAAGAACTGGCCCAGGCGAAGCCTCATCAG
GACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCT
GCCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACAT
GCATCCTCGTTGAGCTACATGAGCACTGTGCGAGGTCGGACAAGCTCGCC
GCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGAAGCCGAGGAAAG
CCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCCCCTTTCCCGTGG
CATTGATATGGCTTCAAGTCTGCCTCGCCAAGGGCGAGACGCACTGTAGC
ACTGTTCGGCGAGTGTTAATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGA
TGAAGAGCTGCTGCAGTTGTCAGATCTAAGTAATTTGGAAAAAGAAGAAT
CGCAGTCCTCGGCGCACCAACTGGGGGGGGAGGAGTAA
back to top

protein sequence of NO04G01540.1

>NO04G01540.1-protein ID=NO04G01540.1-protein|Name=NO04G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MTAASPAPYPLQAVPAFIMDDAAFEAFASCRFQEAARLAAEELAQAKPHQ
DDSQADMLKRPTQGVPLPCSLLDGFLEKEGGKTCILVELHEHCARSDKLA
AILVQCAYELKHEAEESLFVQHYAAQGSIPFPVALIWLQVCLAKGETHCS
TVRRVLMQLLVALEKKDEELLQLSDLSNLEKEESQSSAHQLGGEE*
back to top

mRNA from alignment at chr4:472482..473302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01540.1 ID=NO04G01540.1|Name=NO04G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=821bp|location=Sequence derived from alignment at chr4:472482..473302- (Nannochloropsis oceanica)
ATGACAGCGGCGTCCCCAGCACCATATCCACTACAAGCAGTGCCTGCATT
CATCATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAG
AGGCGGCTCGATTGGCAGCAGAAGAACTGGCCCAGGCGAAGCCTCATCAG
GACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCT
GCCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACAT
GCATCCTCGTTGAGCTACATGAGCACTGTGCGAGGTAGGGTGCAAATCGG
CAGGGTTCCAAAATATGAGCTAAATCCCCTCTCCTTCATAACTACCCTTC
CCTCACCCCTACTCCTGTCCAGGACATAACAAATAGCTTGTTCGCCATCT
CATGCATATTTCCCCTCTTTGTCCTTAACATCCTTTTTCTGGTCAGGTCG
GACAAGCTCGCCGCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGA
AGCCGAGGAAAGCCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCC
CCTTTCCCGTGGCATTGATATGGTACGTTAGACAGCATGTCTTGTTGAAG
CGGAGATTTCGGGTCATTGACATTATCCTCCTCCTCCTCACAGGCTTCAA
GTCTGCCTCGCCAAGGGCGAGACGCACTGTAGCACTGTTCGGCGAGTGTT
AATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGATGAAGAGCTGCTGCAGT
TGTCAGATCTAAGTAATTTGGAAAAAGAAGAATCGCAGTCCTCGGCGCAC
CAACTGGGGGGGGAGGAGTAA
back to top

Coding sequence (CDS) from alignment at chr4:472482..473302-

>NO04G01540.1 ID=NO04G01540.1|Name=NO04G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr4:472482..473302- (Nannochloropsis oceanica)
ATGACAGCGGCGTCCCCAGCACCATATCCACTACAAGCAGTGCCTGCATT
CATCATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAG
AGGCGGCTCGATTGGCAGCAGAAGAACTGGCCCAGGCGAAGCCTCATCAG
GACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCT
GCCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACAT
GCATCCTCGTTGAGCTACATGAGCACTGTGCGAGGTCGGACAAGCTCGCC
GCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGAAGCCGAGGAAAG
CCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCCCCTTTCCCGTGG
CATTGATATGGCTTCAAGTCTGCCTCGCCAAGGGCGAGACGCACTGTAGC
ACTGTTCGGCGAGTGTTAATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGA
TGAAGAGCTGCTGCAGTTGTCAGATCTAAGTAATTTGGAAAAAGAAGAAT
CGCAGTCCTCGGCGCACCAACTGGGGGGGGAGGAGTAA
back to top
Synonyms
Publications