NO04G00870, NO04G00870 (gene) Nannochloropsis oceanica

Overview
NameNO04G00870
Unique NameNO04G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr4:287929..289149 +

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Properties
Property NameValue
DescriptionPleckstriny domain-containing expressed
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:287929..289149 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009769DUF1336
Homology
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: EWM28475.1 (pleckstriny domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 408.3 bits (1048), Expect = 2.800e-110
Identity = 244/368 (66.30%), Postives = 275/368 (74.73%), Query Frame = 0 
Query:   20 LVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388
            LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ  DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +G+ V  + E+                                 KKFL LLAEFLEG D E+N RFKLIPS++EGP ++   VGNKPVLLG KLTQRYW+GPGYLE+GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA     P+
Sbjct:  500 LVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--------------GDGECVQEKREE---------------------------------KKFLRLLAEFLEGDDEEKNRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 820
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BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_005854644.1 (pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526] >EKU21716.1 pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 408.3 bits (1048), Expect = 2.800e-110
Identity = 244/368 (66.30%), Postives = 275/368 (74.73%), Query Frame = 0 
Query:   20 LVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388
            LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ  DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +G+ V  + E+                                 KKFL LLAEFLEG D E+N RFKLIPS++EGP ++   VGNKPVLLG KLTQRYW+GPGYLE+GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA     P+
Sbjct:   31 LVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--------------GDGECVQEKREE---------------------------------KKFLRLLAEFLEGDDEEKNRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 351
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_009533390.1 (hypothetical protein PHYSODRAFT_519461 [Phytophthora sojae] >EGZ10645.1 hypothetical protein PHYSODRAFT_519461 [Phytophthora sojae])

HSP 1 Score: 125.6 bits (314), Expect = 3.600e-25
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ GS+R   +D G+A+ L
Sbjct:  254 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFRGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNPEELPERLFGSVRLVHIDLGVAKKL 372
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BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETI31657.1 (hypothetical protein F443_21399 [Phytophthora parasitica P1569])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETK72036.1 (hypothetical protein L915_20799 [Phytophthora parasitica] >ETL25465.1 hypothetical protein L916_20681 [Phytophthora parasitica] >ETM31939.1 hypothetical protein L914_20558 [Phytophthora parasitica] >ETP01462.1 hypothetical protein F441_21288 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETL78677.1 (hypothetical protein L917_20543 [Phytophthora parasitica])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_008898288.1 (hypothetical protein PPTG_06151 [Phytophthora parasitica INRA-310] >ETN15875.1 hypothetical protein PPTG_06151 [Phytophthora parasitica INRA-310])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETO60369.1 (hypothetical protein F444_21418 [Phytophthora parasitica P1976])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETP29653.1 (hypothetical protein F442_21237 [Phytophthora parasitica P10297])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: KUF80879.1 (hypothetical protein AM587_10015034 [Phytophthora nicotianae] >KUF82552.1 hypothetical protein AM587_10009069 [Phytophthora nicotianae])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  449 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 567
The following BLAST results are available for this feature:
BLAST of NO04G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28475.12.800e-11066.30pleckstriny domain-containing [Nannochloropsis gad... [more]
XP_005854644.12.800e-11066.30pleckstriny domain-containing expressed, partial [... [more]
XP_009533390.13.600e-2548.74hypothetical protein PHYSODRAFT_519461 [Phytophtho... [more]
ETI31657.18.100e-2547.90hypothetical protein F443_21399 [Phytophthora para... [more]
ETK72036.18.100e-2547.90hypothetical protein L915_20799 [Phytophthora para... [more]
ETL78677.18.100e-2547.90hypothetical protein L917_20543 [Phytophthora para... [more]
XP_008898288.18.100e-2547.90hypothetical protein PPTG_06151 [Phytophthora para... [more]
ETO60369.18.100e-2547.90hypothetical protein F444_21418 [Phytophthora para... [more]
ETP29653.18.100e-2547.90hypothetical protein F442_21237 [Phytophthora para... [more]
KUF80879.18.100e-2547.90hypothetical protein AM587_10015034 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00870.1NO04G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659667gene_1865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00870.1NO04G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00870 ID=NO04G00870|Name=NO04G00870|organism=Nannochloropsis oceanica|type=gene|length=1221bp
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
AGGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGTAGAGGCTGC
GGCGGAGCAGCAAAGGAGGGAAGGTGATGAGGGGGGAGGGTTGCAGGGGA
GAGCGGAAGCGAAAGGCTTCCGGGCGGATTGGGAGGAGATGCACGCCGCT
GTTACGGTCGCTGCAGAGGGACAGGTAGTGTCAGTGGAGGGGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATAGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGGTTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGA
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protein sequence of NO04G00870.1

>NO04G00870.1-protein ID=NO04G00870.1-protein|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MGRRKGGREEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVR
GETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLD
GVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQ
RRVRRRRAREAAAVEAAAEQQRREGDEGGGLQGRAEAKGFRADWEEMHAA
VTVAAEGQVVSVEGEKGEEEKGEEDEEEDEEEEEEVEIDEERMRTKQLEK
KFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLT
QRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEER
ELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPTAVSPVPSVESPEE
GGRESV*
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Synonyms
Publications