NO04G00870, NO04G00870 (gene) Nannochloropsis oceanica

Overview
NameNO04G00870
Unique NameNO04G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr4:287929..289149 +

Link to JBrowse

Properties
Property NameValue
DescriptionPleckstriny domain-containing expressed
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:287929..289149 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009769DUF1336
Homology
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: EWM28475.1 (pleckstriny domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 408.3 bits (1048), Expect = 2.800e-110
Identity = 244/368 (66.30%), Postives = 275/368 (74.73%), Query Frame = 0 
Query:   20 LVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388
            LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ  DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +G+ V  + E+                                 KKFL LLAEFLEG D E+N RFKLIPS++EGP ++   VGNKPVLLG KLTQRYW+GPGYLE+GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA     P+
Sbjct:  500 LVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--------------GDGECVQEKREE---------------------------------KKFLRLLAEFLEGDDEEKNRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 820
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_005854644.1 (pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526] >EKU21716.1 pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 408.3 bits (1048), Expect = 2.800e-110
Identity = 244/368 (66.30%), Postives = 275/368 (74.73%), Query Frame = 0 
Query:   20 LVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388
            LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ  DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +G+ V  + E+                                 KKFL LLAEFLEG D E+N RFKLIPS++EGP ++   VGNKPVLLG KLTQRYW+GPGYLE+GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA     P+
Sbjct:   31 LVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--------------GDGECVQEKREE---------------------------------KKFLRLLAEFLEGDDEEKNRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 351
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_009533390.1 (hypothetical protein PHYSODRAFT_519461 [Phytophthora sojae] >EGZ10645.1 hypothetical protein PHYSODRAFT_519461 [Phytophthora sojae])

HSP 1 Score: 125.6 bits (314), Expect = 3.600e-25
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ GS+R   +D G+A+ L
Sbjct:  254 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFRGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNPEELPERLFGSVRLVHIDLGVAKKL 372
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETI31657.1 (hypothetical protein F443_21399 [Phytophthora parasitica P1569])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETK72036.1 (hypothetical protein L915_20799 [Phytophthora parasitica] >ETL25465.1 hypothetical protein L916_20681 [Phytophthora parasitica] >ETM31939.1 hypothetical protein L914_20558 [Phytophthora parasitica] >ETP01462.1 hypothetical protein F441_21288 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETL78677.1 (hypothetical protein L917_20543 [Phytophthora parasitica])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: XP_008898288.1 (hypothetical protein PPTG_06151 [Phytophthora parasitica INRA-310] >ETN15875.1 hypothetical protein PPTG_06151 [Phytophthora parasitica INRA-310])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETO60369.1 (hypothetical protein F444_21418 [Phytophthora parasitica P1976])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: ETP29653.1 (hypothetical protein F442_21237 [Phytophthora parasitica P10297])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  503 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 621
[Close]
BLAST of NO04G00870 vs. NCBI_GenBank
Match: KUF80879.1 (hypothetical protein AM587_10015034 [Phytophthora nicotianae] >KUF82552.1 hypothetical protein AM587_10009069 [Phytophthora nicotianae])

HSP 1 Score: 124.4 bits (311), Expect = 8.100e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:  255 LLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESL 374
            L+A+FLEGSD  RN RFKLIP +VEG  ++  AVG+ P L+GKKL Q Y+ G  Y E+ +DIGSS +A+R +GLV  Y+K +V+++  +++G+   ELPE++ G+ R   +D G+A+ L
Sbjct:  449 LMADFLEGSDEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFKGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNSEELPERLFGTCRLVHIDLGVAKKL 567
The following BLAST results are available for this feature:
BLAST of NO04G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28475.12.800e-11066.30pleckstriny domain-containing [Nannochloropsis gad... [more]
XP_005854644.12.800e-11066.30pleckstriny domain-containing expressed, partial [... [more]
XP_009533390.13.600e-2548.74hypothetical protein PHYSODRAFT_519461 [Phytophtho... [more]
ETI31657.18.100e-2547.90hypothetical protein F443_21399 [Phytophthora para... [more]
ETK72036.18.100e-2547.90hypothetical protein L915_20799 [Phytophthora para... [more]
ETL78677.18.100e-2547.90hypothetical protein L917_20543 [Phytophthora para... [more]
XP_008898288.18.100e-2547.90hypothetical protein PPTG_06151 [Phytophthora para... [more]
ETO60369.18.100e-2547.90hypothetical protein F444_21418 [Phytophthora para... [more]
ETP29653.18.100e-2547.90hypothetical protein F442_21237 [Phytophthora para... [more]
KUF80879.18.100e-2547.90hypothetical protein AM587_10015034 [Phytophthora ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00870.1NO04G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659667gene_1865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00870.1NO04G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00870 ID=NO04G00870|Name=NO04G00870|organism=Nannochloropsis oceanica|type=gene|length=1221bp
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
AGGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGTAGAGGCTGC
GGCGGAGCAGCAAAGGAGGGAAGGTGATGAGGGGGGAGGGTTGCAGGGGA
GAGCGGAAGCGAAAGGCTTCCGGGCGGATTGGGAGGAGATGCACGCCGCT
GTTACGGTCGCTGCAGAGGGACAGGTAGTGTCAGTGGAGGGGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATAGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGGTTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGA
back to top

protein sequence of NO04G00870.1

>NO04G00870.1-protein ID=NO04G00870.1-protein|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MGRRKGGREEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVR
GETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLD
GVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQ
RRVRRRRAREAAAVEAAAEQQRREGDEGGGLQGRAEAKGFRADWEEMHAA
VTVAAEGQVVSVEGEKGEEEKGEEDEEEDEEEEEEVEIDEERMRTKQLEK
KFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLT
QRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEER
ELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPTAVSPVPSVESPEE
GGRESV*
back to top
Synonyms
Publications