NO04G00870.1, NO04G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00870.1
Unique NameNO04G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr4:287929..289149 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:287929..289149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00870.1 vs.
Match: XP_005854644.1 (pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526]; EKU21716.1 pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.7 bits (831), Expect = 4.100e-85
Identity = 216/394 (54.82%), Postives = 259/394 (65.74%), Query Frame = 0 
Query:    2 GRRKGGR---EEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQRRVRRRRARE--AAAVEAAAEQQRREGDEGGGLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKGEEEKGEEDEEEDEEEEEEVEIDEERMRTKQLEKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNK---PVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388
            GRR   R   EE+ ED +VT LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ  DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A+ RVRRR+ARE   AA E   E+Q  E +E       AE +G     E++        +G+ V    EK EE+K      E  E ++E    E+  R K        L+   +EG          L+  MV    ++   +GNK       G    +          +GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA     P+
Sbjct:   10 GRRVEDRWSGEEDVEDREVTTLVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARERVRRRKAREGAVAAAEIIGEEQEEEEEE-----EEAEEEGM----EDL-------GDGECVQ---EKREEKKFLRLLAEFLEGDDE----EKNRRFK--------LIPSIIEGP--------ALVRLMVGNKPVL---LGNKLTQRYWTGPGYLE----------IGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 351
The following BLAST results are available for this feature:
BLAST of NO04G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854644.14.100e-8554.82pleckstriny domain-containing expressed, partial [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00870NO04G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00870.1NO04G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00870.1.cds1NO04G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
AGGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGTAGAGGCTGC
GGCGGAGCAGCAAAGGAGGGAAGGTGATGAGGGGGGAGGGTTGCAGGGGA
GAGCGGAAGCGAAAGGCTTCCGGGCGGATTGGGAGGAGATGCACGCCGCT
GTTACGGTCGCTGCAGAGGGACAGGTAGTGTCAGTGGAGGGGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATAGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGGTTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGA
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protein sequence of NO04G00870.1

>NO04G00870.1-protein ID=NO04G00870.1-protein|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MGRRKGGREEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVR
GETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLD
GVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQ
RRVRRRRAREAAAVEAAAEQQRREGDEGGGLQGRAEAKGFRADWEEMHAA
VTVAAEGQVVSVEGEKGEEEKGEEDEEEDEEEEEEVEIDEERMRTKQLEK
KFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLT
QRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEER
ELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPTAVSPVPSVESPEE
GGRESV*
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mRNA from alignment at chr4:287929..289149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr4:287929..289149+ (Nannochloropsis oceanica)
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
AGGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGTAGAGGCTGC
GGCGGAGCAGCAAAGGAGGGAAGGTGATGAGGGGGGAGGGTTGCAGGGGA
GAGCGGAAGCGAAAGGCTTCCGGGCGGATTGGGAGGAGATGCACGCCGCT
GTTACGGTCGCTGCAGAGGGACAGGTAGTGTCAGTGGAGGGGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATAGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGGTTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGA
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Coding sequence (CDS) from alignment at chr4:287929..289149+

>NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr4:287929..289149+ (Nannochloropsis oceanica)
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
AGGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGTAGAGGCTGC
GGCGGAGCAGCAAAGGAGGGAAGGTGATGAGGGGGGAGGGTTGCAGGGGA
GAGCGGAAGCGAAAGGCTTCCGGGCGGATTGGGAGGAGATGCACGCCGCT
GTTACGGTCGCTGCAGAGGGACAGGTAGTGTCAGTGGAGGGGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATAGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGGTTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGA
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Synonyms
Publications