NO04G00860, NO04G00860 (gene) Nannochloropsis oceanica

Overview
NameNO04G00860
Unique NameNO04G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr4:285807..287768 +

Link to JBrowse

Properties
Property NameValue
DescriptionPleckstriny domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:285807..287768 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00860 vs. NCBI_GenBank
Match: EWM28475.1 (pleckstriny domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 194.1 bits (492), Expect = 1.300e-45
Identity = 156/430 (36.28%), Postives = 192/430 (44.65%), Query Frame = 0 
Query:    1 MSYVKRLWKRGMRRQTSFE-KHRQHPHQQVE---SSSPALLSSSDAGPASRTPLAPGSEASAVRLQQEDLAQQEALIGALQTTVLEQSRKIKDLTQTIARMHGESRHTAHHVEALQRLLAQVVGCDADGSGSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGTAAPANELEEQGLYSYISGFLPSSLIPFYSTDNTPAXXXXXXXXXXXIASCNVLCSLAVHSSAPLTSHAINNSSTNSLDYAQSLLMGQILEKLHLTEDQYAFQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYKSKLRARDYKEATMEVEIDRYRHEKQSITRMLSEAVDGVTAXXXXXXXXXXXXXXTPCLAEVGETEHFPLADSPVPATG 427
            M+YVKRLWKRG+RRQ+SFE K R     Q++     S AL +  D  P     L PGSEAS+ R QQ+D  QQEAL+GALQTTVLEQSRK+KDL+++I R+H E+R   HH+EAL+ LL  V GCD  GSG                                                                         +    P    + QG+Y+Y+S  + S+    + +   P              S   L SLA  +S   T          S++  Q+LLMGQILEKLHL ED+YAFQA                                       AYK+KL+ARDYKEATMEVEIDRYRHEKQ +TRMLSE VD   A              TP   E+G  E FPL  +    TG
Sbjct:    1 MAYVKRLWKRGVRRQSSFETKPRSDSQTQIDLLLEPSCALANDVDGRPR----LVPGSEASSSRHQQDDRMQQEALVGALQTTVLEQSRKLKDLSRSIDRLHAENRRAGHHIEALRSLLGHVTGCDLGGSG------------------PDFQMEEVRETEEKEGRMLALEDETAPVSDDQASGVTNIASRGIAPGAFSTTQAAISEEGPGTSHDIQGVYAYLSSLVASATSTLFPSVE-PLGGSLASAASSSSTSYADLPSLAFPAS---TGAGPRKGVPTSVEDTQALLMGQILEKLHLAEDRYAFQAEEIHACHKRLEGLEEEAAALRAEKQRYERLLLGLKRELTAYKNKLQARDYKEATMEVEIDRYRHEKQRMTRMLSEVVDSAAA-----SSAPASATNTPGSQELG--EFFPLPGASPLGTG 397
The following BLAST results are available for this feature:
BLAST of NO04G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28475.11.300e-4536.28pleckstriny domain-containing [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005017NSK005017Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00860.1NO04G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578235gene_1864Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g8gene2114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00860.1NO04G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00860 ID=NO04G00860|Name=NO04G00860|organism=Nannochloropsis oceanica|type=gene|length=1962bp
ATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGACATC
CTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTAGCC
CCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCCCTT
GCACCGGGGAGCGAAGCCAGCGCTGTCCGGCTGCAACAAGAAGACCTCGC
ACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGCAAA
GTCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGCGAG
AGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGCCCA
GGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGACAGG
AAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACAGGC
CATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTATGT
GATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAACAG
AAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATGGAG
GTGGGAACAGCGGCGCCGGCCAATGAACTTGAAGAGCAGGGGTTATACTC
GTATATTAGCGGTTTTCTTCCTTCCTCTCTCATTCCCTTCTATTCAACCG
ACAACACCCCTGCCGCTGCCTCCTCTTCCTCCTCCCCCTCCTCCTCCATA
GCTTCGTGCAATGTCCTATGCTCTCTCGCTGTCCATTCATCCGCCCCCTT
AACCAGTCACGCGATCAATAACAGCAGCACCAACAGTTTAGATTATGCCC
AGTCCCTCTTAATGGGACAGATTCTTGAGAAGTTGCACCTGACGGAAGAC
CAGTACGCATTTCAAGCAGAGGAGCTCCATGCCTTTCAACGACAGGTGGA
AATGTTGGAGGAAGAGCTGGTGGCTTTGCGAGAGGAGAAGCAGCGGCATG
ATCGGCTTCTGGTGGGGTTGAAGCGAGAATTGGCGGCGTATAAGAGCAAG
TTGCGTGCGAGGGACTACAAGGAAGCGACGATGGAGGTAGAGATCGATCG
ATACCGGCACGAGAAGCAGAGCATTACGCGGATGTTGAGTGAAGCGGTGG
ATGGAGTGACGGCCTCTGCCTCTGCTGCTGCGTCCGCGGGGGCGTCGGCC
GCGAGCACGCCTTGTCTTGCCGAGGTAGGTGAGACAGAGCATTTTCCTCT
AGCCGACTCTCCGGTGCCAGCGACAGGGGGAATACTGATTATGGGGGACG
GACAGCAGCATCAGCAGTCGCTGTACTACTCTCAGCGACACGAGCAGCAT
CAGCAGGAACGGCAATATTGGTCTCAGCTACAACCTCACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCTTGCGGTGACACCCACCACCCAGCATACCATGG
CCTCGACGCTCCATGCACTAGATCAGCTGATTGAAGCAAGCAGTGAAGGA
AGAGGGAGAGGAGGACAAGGAGGAGGAGGGGCGCCTGCTGCACCTTCCCC
TCTTCCCACTCCTCTGGCGATCCACTCGCGAGCCGATCAAGGGACAAACA
GCAACAGAAACAGCAGCAGCAGCAGCAGTCGTCACGGGATCCATTGCTCC
CCTAAAGCTGGGAGTAGCCAAATACACGCTCTAGCAGCACCGCATCGCAT
CACTCCCCCGGCCAAGGCTACTGCTTCGTCCCCATCCTCCACGGCCCCCC
CCTCGTCCTTCCCTCTGCTGTCTCAGCCGCCTTCTCCATGTCCTCCCTCC
ATACCGATCATCGCCAACATCATCATCATCATCATCATCACCAACAACAG
CAGCAACAACAGCAACAACAGCAACAACAGCAGCAACCCAACACTCAACT
CCGAGTTGAAATGGCTGCACTGCAGGCGGAATTGGAAGCGGCGCGCGCCG
TGTCGGAAGTAG
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protein sequence of NO04G00860.1

>NO04G00860.1-protein ID=NO04G00860.1-protein|Name=NO04G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MSYVKRLWKRGMRRQTSFEKHRQHPHQQVESSSPALLSSSDAGPASRTPL
APGSEASAVRLQQEDLAQQEALIGALQTTVLEQSRKIKDLTQTIARMHGE
SRHTAHHVEALQRLLAQVVGCDADGSGSCGVRQEEMRGGGKGKSGSNSTG
HGARMLAPTPMPMSNYVMAKEAATAAAAAKTTTETVTTEAVAADSSTSME
VGTAAPANELEEQGLYSYISGFLPSSLIPFYSTDNTPAAASSSSSPSSSI
ASCNVLCSLAVHSSAPLTSHAINNSSTNSLDYAQSLLMGQILEKLHLTED
QYAFQAEELHAFQRQVEMLEEELVALREEKQRHDRLLVGLKRELAAYKSK
LRARDYKEATMEVEIDRYRHEKQSITRMLSEAVDGVTASASAAASAGASA
ASTPCLAEVGETEHFPLADSPVPATGGILIMGDGQQHQQSLYYSQRHEQH
QQERQYWSQLQPHKQQQQQQQQLAVTPTTQHTMASTLHALDQLIEASSEG
RGRGGQGGGGAPAAPSPLPTPLAIHSRADQGTNSNRNSSSSSSRHGIHCS
PKAGSSQIHALAAPHRITPPAKATASSPSSTAPPSSFPLLSQPPSPCPPS
IPIIANIIIIIIITNNSSNNSNNSNNSSNPTLNSELKWLHCRRNWKRRAP
CRK*
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Synonyms
Publications