NO04G00860.1, NO04G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00860.1
Unique NameNO04G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr4:285807..287768 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:285807..287768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00860.1 vs.
Match: EWM28475.1 (pleckstriny domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 3.700e-64
Identity = 218/517 (42.17%), Postives = 293/517 (56.67%), Query Frame = 0 
Query:    1 MSYVKRLWKRGMRRQTSFE-KHRQHPHQQVE---SSSPALLSSSDAGPASRTPLAPGSEASAVRLQQEDLAQQEALIGALQTTVLEQSRKIKDLTQTIARMHGESRHTAHHVEALQRLLAQVVGCDADGSGSCGVRQEEMRGGGKGKSGSNSTGHGARMLAPTPMPMSNYVMAKEAATAAAAAKTTTETVTTEAVA--ADSSTSMEVGTAAPANELEEQGLYSYISGFLPSSLIPFYSTDNTPAAASSSSSPSSSIASCNVLCSLAVHSSAPLTSHAINNSSTNSLDYAQSLLMGQILEKLHLTEDQYAFQAEELHAFQRQVEMLEEELVALREEKQRHDRLLVGLKRELAAYKSKLRARDYKEATMEVEIDRYRHEKQSITRMLSEAVDGVTASASAAASAGASAASTPCLAEVGETEHFPLADSPVPATGGILIMGDGQQHQQSLYYSQRHEQHQQERQYWSQLQPHKQQQQQQQQLAVTPTTQHTMASTLH-ALDQLIEASSEGRGRGGQGGGG 511
            M+YVKRLWKRG+RRQ+SFE K R     Q++     S AL +  D  P     L PGSEAS+ R QQ+D  QQEAL+GALQTTVLEQSRK+KDL+++I R+H E+R   HH+EAL+ LL  V GCD  GSG    + EE+R          +     RMLA          +  E A  +    +    + +  +A  A S+T   +    P    + QG+Y+Y+S  + S+    + +   P   S +S+ SSS  S   L SLA  +S   T          S++  Q+LLMGQILEKLHL ED+YAFQAEE+HA  +++E LEEE  ALR EKQR++RLL+GLKREL AYK+KL+ARDYKEATMEVEIDRYRHEKQ +TRMLSE VD     ++AA+SA ASA +TP   E+G  E FPL  +    TG +    +    Q  L  ++   + +  ++  ++   H+    ++      P       S       + +    +G G GG GGGG
Sbjct:    1 MAYVKRLWKRGVRRQSSFETKPRSDSQTQIDLLLEPSCALANDVDGRPR----LVPGSEASSSRHQQDDRMQQEALVGALQTTVLEQSRKLKDLSRSIDRLHAENRRAGHHIEALRSLLGHVTGCDLGGSGP-DFQMEEVR---------ETEEKEGRMLA----------LEDETAPVSDDQASGVTNIASRGIAPGAFSTTQAAISEEGPGTSHDIQGVYAYLSSLVASATSTLFPSVE-PLGGSLASAASSSSTSYADLPSLAFPAS---TGAGPRKGVPTSVEDTQALLMGQILEKLHLAEDRYAFQAEEIHACHKRLEGLEEEAAALRAEKQRYERLLLGLKRELTAYKNKLQARDYKEATMEVEIDRYRHEKQRMTRMLSEVVD-----SAAASSAPASATNTPGSQELG--EFFPLPGASPLGTGRMRARVEMAALQAELDAARAVSEVEVRKRVAAE---HELSVWRKALAESGPRLSSVQGSAARPGGGESVSGEGKGPGIGGVGGGG 479
The following BLAST results are available for this feature:
BLAST of NO04G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28475.13.700e-6442.17pleckstriny domain-containing [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00860NO04G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00860.1NO04G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00860.1.cds1NO04G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00860.1 ID=NO04G00860.1|Name=NO04G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
ATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGACATC
CTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTAGCC
CCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCCCTT
GCACCGGGGAGCGAAGCCAGCGCTGTCCGGCTGCAACAAGAAGACCTCGC
ACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGCAAA
GTCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGCGAG
AGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGCCCA
GGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGACAGG
AAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACAGGC
CATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTATGT
GATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAACAG
AAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATGGAG
GTGGGAACAGCGGCGCCGGCCAATGAACTTGAAGAGCAGGGGTTATACTC
GTATATTAGCGGTTTTCTTCCTTCCTCTCTCATTCCCTTCTATTCAACCG
ACAACACCCCTGCCGCTGCCTCCTCTTCCTCCTCCCCCTCCTCCTCCATA
GCTTCGTGCAATGTCCTATGCTCTCTCGCTGTCCATTCATCCGCCCCCTT
AACCAGTCACGCGATCAATAACAGCAGCACCAACAGTTTAGATTATGCCC
AGTCCCTCTTAATGGGACAGATTCTTGAGAAGTTGCACCTGACGGAAGAC
CAGTACGCATTTCAAGCAGAGGAGCTCCATGCCTTTCAACGACAGGTGGA
AATGTTGGAGGAAGAGCTGGTGGCTTTGCGAGAGGAGAAGCAGCGGCATG
ATCGGCTTCTGGTGGGGTTGAAGCGAGAATTGGCGGCGTATAAGAGCAAG
TTGCGTGCGAGGGACTACAAGGAAGCGACGATGGAGGTAGAGATCGATCG
ATACCGGCACGAGAAGCAGAGCATTACGCGGATGTTGAGTGAAGCGGTGG
ATGGAGTGACGGCCTCTGCCTCTGCTGCTGCGTCCGCGGGGGCGTCGGCC
GCGAGCACGCCTTGTCTTGCCGAGGTAGGTGAGACAGAGCATTTTCCTCT
AGCCGACTCTCCGGTGCCAGCGACAGGGGGAATACTGATTATGGGGGACG
GACAGCAGCATCAGCAGTCGCTGTACTACTCTCAGCGACACGAGCAGCAT
CAGCAGGAACGGCAATATTGGTCTCAGCTACAACCTCACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCTTGCGGTGACACCCACCACCCAGCATACCATGG
CCTCGACGCTCCATGCACTAGATCAGCTGATTGAAGCAAGCAGTGAAGGA
AGAGGGAGAGGAGGACAAGGAGGAGGAGGGGCGCCTGCTGCACCTTCCCC
TCTTCCCACTCCTCTGGCGATCCACTCGCGAGCCGATCAAGGGACAAACA
GCAACAGAAACAGCAGCAGCAGCAGCAGTCGTCACGGGATCCATTGCTCC
CCTAAAGCTGGGAGTAGCCAAATACACGCTCTAGCAGCACCGCATCGCAT
CACTCCCCCGGCCAAGGCTACTGCTTCGTCCCCATCCTCCACGGCCCCCC
CCTCGTCCTTCCCTCTGCTGTCTCAGCCGCCTTCTCCATGTCCTCCCTCC
ATACCGATCATCGCCAACATCATCATCATCATCATCATCACCAACAACAG
CAGCAACAACAGCAACAACAGCAACAACAGCAGCAACCCAACACTCAACT
CCGAGTTGAAATGGCTGCACTGCAGGCGGAATTGGAAGCGGCGCGCGCCG
TGTCGGAAGTAG
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protein sequence of NO04G00860.1

>NO04G00860.1-protein ID=NO04G00860.1-protein|Name=NO04G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MSYVKRLWKRGMRRQTSFEKHRQHPHQQVESSSPALLSSSDAGPASRTPL
APGSEASAVRLQQEDLAQQEALIGALQTTVLEQSRKIKDLTQTIARMHGE
SRHTAHHVEALQRLLAQVVGCDADGSGSCGVRQEEMRGGGKGKSGSNSTG
HGARMLAPTPMPMSNYVMAKEAATAAAAAKTTTETVTTEAVAADSSTSME
VGTAAPANELEEQGLYSYISGFLPSSLIPFYSTDNTPAAASSSSSPSSSI
ASCNVLCSLAVHSSAPLTSHAINNSSTNSLDYAQSLLMGQILEKLHLTED
QYAFQAEELHAFQRQVEMLEEELVALREEKQRHDRLLVGLKRELAAYKSK
LRARDYKEATMEVEIDRYRHEKQSITRMLSEAVDGVTASASAAASAGASA
ASTPCLAEVGETEHFPLADSPVPATGGILIMGDGQQHQQSLYYSQRHEQH
QQERQYWSQLQPHKQQQQQQQQLAVTPTTQHTMASTLHALDQLIEASSEG
RGRGGQGGGGAPAAPSPLPTPLAIHSRADQGTNSNRNSSSSSSRHGIHCS
PKAGSSQIHALAAPHRITPPAKATASSPSSTAPPSSFPLLSQPPSPCPPS
IPIIANIIIIIIITNNSSNNSNNSNNSSNPTLNSELKWLHCRRNWKRRAP
CRK*
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mRNA from alignment at chr4:285807..287768+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00860.1 ID=NO04G00860.1|Name=NO04G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at chr4:285807..287768+ (Nannochloropsis oceanica)
ATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGACATC
CTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTAGCC
CCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCCCTT
GCACCGGGGAGCGAAGCCAGCGCTGTCCGGCTGCAACAAGAAGACCTCGC
ACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGCAAA
GTCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGCGAG
AGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGCCCA
GGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGACAGG
AAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACAGGC
CATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTATGT
GATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAACAG
AAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATGGAG
GTGGGAACAGCGGCGCCGGCCAATGAACTTGAAGAGCAGGGGTTATACTC
GTATATTAGCGGTTTTCTTCCTTCCTCTCTCATTCCCTTCTATTCAACCG
ACAACACCCCTGCCGCTGCCTCCTCTTCCTCCTCCCCCTCCTCCTCCATA
GCTTCGTGCAATGTCCTATGCTCTCTCGCTGTCCATTCATCCGCCCCCTT
AACCAGTCACGCGATCAATAACAGCAGCACCAACAGTTTAGATTATGCCC
AGTCCCTCTTAATGGGACAGATTCTTGAGAAGTTGCACCTGACGGAAGAC
CAGTACGCATTTCAAGCAGAGGAGCTCCATGCCTTTCAACGACAGGTGGA
AATGTTGGAGGAAGAGCTGGTGGCTTTGCGAGAGGAGAAGCAGCGGCATG
ATCGGCTTCTGGTGGGGTTGAAGCGAGAATTGGCGGCGTATAAGAGCAAG
TTGCGTGCGAGGGACTACAAGGAAGCGACGATGGAGGTAGAGATCGATCG
ATACCGGCACGAGAAGCAGAGCATTACGCGGATGTTGAGTGAAGCGGTGG
ATGGAGTGACGGCCTCTGCCTCTGCTGCTGCGTCCGCGGGGGCGTCGGCC
GCGAGCACGCCTTGTCTTGCCGAGGTAGGTGAGACAGAGCATTTTCCTCT
AGCCGACTCTCCGGTGCCAGCGACAGGGGGAATACTGATTATGGGGGACG
GACAGCAGCATCAGCAGTCGCTGTACTACTCTCAGCGACACGAGCAGCAT
CAGCAGGAACGGCAATATTGGTCTCAGCTACAACCTCACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCTTGCGGTGACACCCACCACCCAGCATACCATGG
CCTCGACGCTCCATGCACTAGATCAGCTGATTGAAGCAAGCAGTGAAGGA
AGAGGGAGAGGAGGACAAGGAGGAGGAGGGGCGCCTGCTGCACCTTCCCC
TCTTCCCACTCCTCTGGCGATCCACTCGCGAGCCGATCAAGGGACAAACA
GCAACAGAAACAGCAGCAGCAGCAGCAGTCGTCACGGGATCCATTGCTCC
CCTAAAGCTGGGAGTAGCCAAATACACGCTCTAGCAGCACCGCATCGCAT
CACTCCCCCGGCCAAGGCTACTGCTTCGTCCCCATCCTCCACGGCCCCCC
CCTCGTCCTTCCCTCTGCTGTCTCAGCCGCCTTCTCCATGTCCTCCCTCC
ATACCGATCATCGCCAACATCATCATCATCATCATCATCACCAACAACAG
CAGCAACAACAGCAACAACAGCAACAACAGCAGCAACCCAACACTCAACT
CCGAGTTGAAATGGCTGCACTGCAGGCGGAATTGGAAGCGGCGCGCGCCG
TGTCGGAAGTAG
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Coding sequence (CDS) from alignment at chr4:285807..287768+

>NO04G00860.1 ID=NO04G00860.1|Name=NO04G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at chr4:285807..287768+ (Nannochloropsis oceanica)
ATGTCCTACGTTAAGCGGCTGTGGAAGCGGGGAATGCGTCGTCAGACATC
CTTTGAAAAGCACAGACAACATCCGCACCAGCAGGTTGAGTCCTCTAGCC
CCGCCCTTCTCTCCTCGTCCGATGCCGGTCCTGCGTCACGCACACCCCTT
GCACCGGGGAGCGAAGCCAGCGCTGTCCGGCTGCAACAAGAAGACCTCGC
ACAGCAAGAAGCATTGATCGGAGCATTGCAGACGACTGTTCTGGAGCAAA
GTCGGAAGATCAAGGATTTAACTCAGACAATTGCGCGGATGCATGGCGAG
AGCCGACACACGGCTCACCACGTGGAAGCGTTGCAGCGCCTGCTTGCCCA
GGTGGTGGGGTGCGATGCTGATGGCAGCGGGAGTTGTGGTGTCAGACAGG
AAGAAATGCGCGGTGGTGGGAAAGGAAAGAGTGGATCGAACTCGACAGGC
CATGGGGCAAGGATGCTAGCCCCGACGCCCATGCCGATGTCGAACTATGT
GATGGCCAAGGAAGCAGCAACAGCAGCAGCAGCAGCAAAGACAACAACAG
AAACAGTAACCACAGAAGCAGTAGCAGCTGACAGCAGCACCAGTATGGAG
GTGGGAACAGCGGCGCCGGCCAATGAACTTGAAGAGCAGGGGTTATACTC
GTATATTAGCGGTTTTCTTCCTTCCTCTCTCATTCCCTTCTATTCAACCG
ACAACACCCCTGCCGCTGCCTCCTCTTCCTCCTCCCCCTCCTCCTCCATA
GCTTCGTGCAATGTCCTATGCTCTCTCGCTGTCCATTCATCCGCCCCCTT
AACCAGTCACGCGATCAATAACAGCAGCACCAACAGTTTAGATTATGCCC
AGTCCCTCTTAATGGGACAGATTCTTGAGAAGTTGCACCTGACGGAAGAC
CAGTACGCATTTCAAGCAGAGGAGCTCCATGCCTTTCAACGACAGGTGGA
AATGTTGGAGGAAGAGCTGGTGGCTTTGCGAGAGGAGAAGCAGCGGCATG
ATCGGCTTCTGGTGGGGTTGAAGCGAGAATTGGCGGCGTATAAGAGCAAG
TTGCGTGCGAGGGACTACAAGGAAGCGACGATGGAGGTAGAGATCGATCG
ATACCGGCACGAGAAGCAGAGCATTACGCGGATGTTGAGTGAAGCGGTGG
ATGGAGTGACGGCCTCTGCCTCTGCTGCTGCGTCCGCGGGGGCGTCGGCC
GCGAGCACGCCTTGTCTTGCCGAGGTAGGTGAGACAGAGCATTTTCCTCT
AGCCGACTCTCCGGTGCCAGCGACAGGGGGAATACTGATTATGGGGGACG
GACAGCAGCATCAGCAGTCGCTGTACTACTCTCAGCGACACGAGCAGCAT
CAGCAGGAACGGCAATATTGGTCTCAGCTACAACCTCACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCTTGCGGTGACACCCACCACCCAGCATACCATGG
CCTCGACGCTCCATGCACTAGATCAGCTGATTGAAGCAAGCAGTGAAGGA
AGAGGGAGAGGAGGACAAGGAGGAGGAGGGGCGCCTGCTGCACCTTCCCC
TCTTCCCACTCCTCTGGCGATCCACTCGCGAGCCGATCAAGGGACAAACA
GCAACAGAAACAGCAGCAGCAGCAGCAGTCGTCACGGGATCCATTGCTCC
CCTAAAGCTGGGAGTAGCCAAATACACGCTCTAGCAGCACCGCATCGCAT
CACTCCCCCGGCCAAGGCTACTGCTTCGTCCCCATCCTCCACGGCCCCCC
CCTCGTCCTTCCCTCTGCTGTCTCAGCCGCCTTCTCCATGTCCTCCCTCC
ATACCGATCATCGCCAACATCATCATCATCATCATCATCACCAACAACAG
CAGCAACAACAGCAACAACAGCAACAACAGCAGCAACCCAACACTCAACT
CCGAGTTGAAATGGCTGCACTGCAGGCGGAATTGGAAGCGGCGCGCGCCG
TGTCGGAAGTAG
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Synonyms
Publications