NO04G00430, NO04G00430 (gene) Nannochloropsis oceanica

Overview
NameNO04G00430
Unique NameNO04G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1519
Alignment locationchr4:170613..172131 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:170613..172131 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO04G00430 vs. NCBI_GenBank
Match: EWM28510.1 (hypothetical protein Naga_100131g1 [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 1.200e-81
Identity = 143/165 (86.67%), Postives = 158/165 (95.76%), Query Frame = 0
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVESHRSVLQYGHMLRLPVMDSNMN 166
            MTATLVYQVP GDFGAYLLGPWKRTLECREFGK+YEHQRTS+SVVVIEHA+GVAAEPPTYFLNWKFGRSLE+EDLKLG+CMHFM+D DITNLEWR+EE+KCHGWFLP I+VATLNFR+ +RSTTVTYRVVDEDTMAVSIVEVES RS +QYGHMLRLPV+D++ N
Sbjct:    1 MTATLVYQVPGGDFGAYLLGPWKRTLECREFGKSYEHQRTSNSVVVIEHAVGVAAEPPTYFLNWKFGRSLEEEDLKLGFCMHFMQDPDITNLEWRFEEHKCHGWFLPSISVATLNFRSYDRSTTVTYRVVDEDTMAVSIVEVESQRSSVQYGHMLRLPVVDTSKN 165          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: XP_008611924.1 (hypothetical protein SDRG_07846 [Saprolegnia diclina VS20] >EQC34518.1 hypothetical protein SDRG_07846 [Saprolegnia diclina VS20])

HSP 1 Score: 156.8 bits (395), Expect = 6.500e-35
Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = 0
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            M +   + VP GDF +YLLG WKRTLE R FG T++H RT+++VV+IE  +  A +P T FL W FGR + K +L   Y + F+ D   T +EW +E   CHG F P  +VA  NF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M R+
Sbjct:    1 MNSATRFDVPGGDFCSYLLGTWKRTLEWRNFGSTFKHLRTTNNVVLIEEDMLAAKQPNTRFLKWSFGRGIRKSELTNAYTIQFIPDEQGTFMEWSFEGVTCHGLFKPESSVAIFNFCLQESMVTITYRVLDANTMAVCIVDVDSDHAPTIQYGNMYRI 158          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: XP_009825075.1 (hypothetical protein H257_02934 [Aphanomyces astaci] >ETV85057.1 hypothetical protein H257_02934 [Aphanomyces astaci])

HSP 1 Score: 156.8 bits (395), Expect = 6.500e-35
Identity = 77/166 (46.39%), Postives = 101/166 (60.84%), Query Frame = 0
Query:    3 ATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRLPVMDSNMNDA 168
            +T  Y+V  GDF AYL+G WKRTLE R FG T+ H RT+++VVVIE     A +P T FL W FGR L K +L   Y + F+ D   T +EW +E   CHG F P  +VA  NF   +   T+TYR++D  TMAV IV+V+S H   +QYG+M R+       +DA
Sbjct:    2 STTRYEVKDGDFSAYLVGTWKRTLEWRNFGSTFGHVRTTNNVVVIEEDTTAAKQPNTKFLKWSFGRGLRKNELTAAYTIQFIPDDKGTFMEWSFEGATCHGLFKPEASVAIFNFCLHDSMVTITYRMLDASTMAVCIVDVDSDHTPTIQYGNMYRIDPTKYRPDDA 167          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: OQR85465.1 (hypothetical protein ACHHYP_11812 [Achlya hypogyna])

HSP 1 Score: 156.4 bits (394), Expect = 8.500e-35
Identity = 74/155 (47.74%), Postives = 98/155 (63.23%), Query Frame = 0
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHM 155
            M +   Y VP  DFG+YLLG WKRTLE R FG T++H RT+++VV++E     A +P T FL W FGR + K +L   Y + F+ D   T +EW +E   CHG F P  +VA  NF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M
Sbjct:    1 MNSATRYDVPDADFGSYLLGTWKRTLEWRNFGSTFKHIRTTNNVVLVEEDTQAAKQPNTRFLKWSFGRGIRKSELTSAYTIQFIPDEQGTFMEWSFEGVTCHGLFKPESSVAIFNFCLQESMVTITYRVLDANTMAVCIVDVDSDHTPTIQYGNM 155          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: XP_009522867.1 (hypothetical protein PHYSODRAFT_312938 [Phytophthora sojae] >EGZ20150.1 hypothetical protein PHYSODRAFT_312938 [Phytophthora sojae])

HSP 1 Score: 153.7 bits (387), Expect = 5.500e-34
Identity = 75/157 (47.77%), Postives = 101/157 (64.33%), Query Frame = 0
Query:    2 TATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            T  + Y VP GDF AYL G WKR LE R FG +++H R++++VV IE  +  A +P T FL W FGR+ +K+DL   Y + F+ D   T +EW +E   CHG F P  +VA LNF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M R+
Sbjct:    6 TNVVRYDVPNGDFCAYLKGFWKRNLEWRHFGASFKHLRSTNNVVFIEEDLDAARQPNTQFLRWSFGRTHKKQDLASAYTVQFIPDEQGTFMEWSFEGVTCHGVFKPEASVAILNFCLQESMVTITYRVLDANTMAVCIVDVDSEHTPTIQYGNMYRI 162          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: OQS02568.1 (hypothetical protein THRCLA_21388 [Thraustotheca clavata])

HSP 1 Score: 153.7 bits (387), Expect = 5.500e-34
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 0
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            M+AT  Y VP GD  +YLLG WKRTLE R FG TY+H RTS++VV+IE     A +P T FL W FGR + K +L   Y + F+ D     +EW +E   CHG F P  +VA  NF   E   T+TYR++D +TMAV I++V+S H   +QYG+M R+
Sbjct:    1 MSATR-YDVPNGDLCSYLLGTWKRTLEWRNFGSTYKHLRTSNNVVLIEEDTMAAKQPGTRFLKWSFGRGIRKNELTNAYTIQFIPDEQGMFMEWSFEGVTCHGLFKPESSVAIFNFCLQESLVTITYRILDANTMAVCIIDVDSEHTPTIQYGNMYRI 157          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: XP_012195292.1 (hypothetical protein SPRG_19096 [Saprolegnia parasitica CBS 223.65] >KDO34276.1 hypothetical protein SPRG_19096 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 152.9 bits (385), Expect = 9.400e-34
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            M +   + VP  DF +YLLG WKRTLE R FG T++H RT+++VV+IE     A +P T FL W FGR + K +L   Y + F+ D   T +EW +E   CHG F P  +VA  NF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M R+
Sbjct:    1 MNSATRFDVPDADFCSYLLGTWKRTLEWRNFGSTFKHLRTTNNVVLIEEDTLAAKQPNTRFLKWSFGRGIRKSELTNAYTIQFIPDEQGTFMEWSFEGVTCHGLFKPESSVAIFNFCLQESMVTITYRVLDANTMAVCIVDVDSDHAPTIQYGNMYRI 158          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: XP_008901953.1 (hypothetical protein PPTG_08956, partial [Phytophthora parasitica INRA-310] >ETI52134.1 hypothetical protein F443_04657, partial [Phytophthora parasitica P1569] >ETK92022.1 hypothetical protein L915_04542, partial [Phytophthora parasitica] >ETL45404.1 hypothetical protein L916_04496, partial [Phytophthora parasitica] >ETL98583.1 hypothetical protein L917_04375, partial [Phytophthora parasitica] >ETM51750.1 hypothetical protein L914_04476, partial [Phytophthora parasitica] >ETN12949.1 hypothetical protein PPTG_08956, partial [Phytophthora parasitica INRA-310] >ETO80908.1 hypothetical protein F444_04688, partial [Phytophthora parasitica P1976] >ETP21936.1 hypothetical protein F441_04644, partial [Phytophthora parasitica CJ01A1] >ETP49841.1 hypothetical protein F442_04705, partial [Phytophthora parasitica P10297])

HSP 1 Score: 152.5 bits (384), Expect = 1.200e-33
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 0
Query:    7 YQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            Y VP GDF AYL G WKR LE R FG +++H R+++++V IE  +  A +P T FL W FGR+L+++DL   Y + F+ D   T +EW +E   CHG F P   VA LNF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M R+
Sbjct:   27 YDVPNGDFCAYLKGFWKRNLEWRRFGASFKHLRSTNNIVFIEEDLDAARQPNTQFLRWSFGRTLKQQDLASAYTVQFIPDEQGTFMEWSFEGVTCHGVFKPEANVAILNFCLQESMVTITYRVLDANTMAVCIVDVDSEHTPTIQYGNMYRI 178          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: KUF88571.1 (hypothetical protein AM587_10007881 [Phytophthora nicotianae])

HSP 1 Score: 150.6 bits (379), Expect = 4.700e-33
Identity = 72/149 (48.32%), Postives = 97/149 (65.10%), Query Frame = 0
Query:    7 YQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHM 155
            Y VP GDF AYL G WKR LE R FG +++H R+++++V IE  +  A +P T FL W FGR+L+++DL   Y + F+ D   T +EW +E   CHG F P   VA LNF   E   T+TYRV+D +TMAV IV+V+S H   +QYG+M
Sbjct:   11 YDVPNGDFCAYLKGFWKRNLEWRRFGASFKHLRSTNNIVFIEEDLDAARQPNTQFLRWSFGRTLKQQDLASAYTVQFIPDEQGTFMEWSFEGVTCHGVFKPEANVAILNFCLQESMVTITYRVLDANTMAVCIVDVDSEHTPTIQYGNM 159          
BLAST of NO04G00430 vs. NCBI_GenBank
Match: POM67571.1 (Hypothetical protein PHPALM_16403 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 149.8 bits (377), Expect = 7.900e-33
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 0
Query:    2 TATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVES-HRSVLQYGHMLRL 158
            T  + Y VP GDF  YL G WKR LE R FG +++H R++++VV IE  +  A +P T FL W FGR+ +++DL   Y + F+ D   T +EW +E   CHG F P  +VA LNF   E   T+TYR++D +TMAV IV+V+S H   +QYG+M R+
Sbjct:    5 TNVVRYDVPNGDFCTYLKGFWKRNLEWRHFGASFKHLRSTNNVVHIEEDLNAARQPNTQFLRWSFGRTHKQQDLASAYTVQFIPDEQGTFMEWSFEGVTCHGVFKPEASVAILNFCLQESMVTITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRI 161          
The following BLAST results are available for this feature:
BLAST of NO04G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28510.11.200e-8186.67hypothetical protein Naga_100131g1 [Nannochloropsi... [more]
XP_008611924.16.500e-3547.47hypothetical protein SDRG_07846 [Saprolegnia dicli... [more]
XP_009825075.16.500e-3546.39hypothetical protein H257_02934 [Aphanomyces astac... [more]
OQR85465.18.500e-3547.74hypothetical protein ACHHYP_11812 [Achlya hypogyna... [more]
XP_009522867.15.500e-3447.77hypothetical protein PHYSODRAFT_312938 [Phytophtho... [more]
OQS02568.15.500e-3448.10hypothetical protein THRCLA_21388 [Thraustotheca c... [more]
XP_012195292.19.400e-3446.84hypothetical protein SPRG_19096 [Saprolegnia paras... [more]
XP_008901953.11.200e-3348.03hypothetical protein PPTG_08956, partial [Phytopht... [more]
KUF88571.14.700e-3348.32hypothetical protein AM587_10007881 [Phytophthora ... [more]
POM67571.17.900e-3345.86Hypothetical protein PHPALM_16403 [Phytophthora pa... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009720NSK009720Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00430.1NO04G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578069gene_1824Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g1gene2076Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00430.1NO04G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00430 ID=NO04G00430|Name=NO04G00430|organism=Nannochloropsis oceanica|type=gene|length=1519bp
ATGACAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTA
TTTACTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGA
CCTACGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCC
ATAGGAGTCGCAGCCGAGCCGCCGACTTATgtaagttatgcatgcatatg
tgtaggcaatcatcgagtgtgaatttgcgggaagacaggtgcgcgcttcg
cttcccgcggtaagtgtggatggagaaatgggaaagggcatgcgacggaa
agagaggtgatggcagcaatgcgatttgcctgtacccaccaagctgtata
cgtatgaggtttctggatagatatgccgctacgcaccaggggagaataaa
ataataaggttgaaaagtaagacgatagggcataatcaaattagtctcat
ggcggccactgtgagtgcttggcgcatggtcttttgaagcactctctcgg
cctgctttccttcacatactcatgtgcctgtattttatgatttcggatgt
tggcaattttgacatgtagccaaatatctgataacgacgacattgatacc
aaagcttgcagcaattgccacccagccaatttaccgcgctttaccccatc
cattcactctcactccttcttggcacccctacacccaacaacagTTTCTC
AATTGGAAGTTTGGCCGCTCATTGGAGAAGGAGGATCTGAAACTTGGCTA
CTGCATGCACTTTATGCGCGATACGGATATAACGAATCTGGAATGGCGGT
ATGAAGgtatgtgcaccatgctggataggcgtatagggtcacgctgattg
agagcaggaaagaaaatagtacagtgtggatcaaatcatttttcacacga
tgtactcataaaatttactctttcctttttttgacccaatcctcttgccc
agAAAACAAATGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACTC
TCAATTTTCGGACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTG
GACGAGGATACCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATC
CGTTTTACAATACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATA
TGAATgtaagcggcgttgggagacggagtaggggtggcatggggggagag
agatgatgatgatgctgtgaggcgaaagcaaaggtataacgcgacgcttg
acaaaaagaaatatagatattaacatgccgccatgttacatcgttttcag
atgcgtttgctttctttattggtggggggatgggggaagagggttgggca
gctcgagttgatttctgcacttttcgtcttggggatttcgtgagtgcatt
acaaccaacagagcccatttggtccacacacccacacccaacaccctctc
ctctctctcatacctcatacacagGACGCGCTTGCTGTTACCGCCGTTCG
CCACCTGCTTGTTTGCTGA
back to top

protein sequence of NO04G00430.1

>NO04G00430.1-protein ID=NO04G00430.1-protein|Name=NO04G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHA
IGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENK
CHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVESHRSVLQ
YGHMLRLPVMDSNMNDALAVTAVRHLLVC*
back to top
Synonyms
Publications