NO04G00430.1, NO04G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00430.1
Unique NameNO04G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length540
Alignment locationchr4:170613..172131 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:170613..172131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00430.1 vs.
Match: EWM28510.1 (hypothetical protein Naga_100131g1 [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 1.200e-81
Identity = 143/165 (86.67%), Postives = 158/165 (95.76%), Query Frame = 0 
Query:    1 MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHAIGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENKCHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVESHRSVLQYGHMLRLPVMDSNMN 166
            MTATLVYQVP GDFGAYLLGPWKRTLECREFGK+YEHQRTS+SVVVIEHA+GVAAEPPTYFLNWKFGRSLE+EDLKLG+CMHFM+D DITNLEWR+EE+KCHGWFLP I+VATLNFR+ +RSTTVTYRVVDEDTMAVSIVEVES RS +QYGHMLRLPV+D++ N
Sbjct:    1 MTATLVYQVPGGDFGAYLLGPWKRTLECREFGKSYEHQRTSNSVVVIEHAVGVAAEPPTYFLNWKFGRSLEEEDLKLGFCMHFMQDPDITNLEWRFEEHKCHGWFLPSISVATLNFRSYDRSTTVTYRVVDEDTMAVSIVEVESQRSSVQYGHMLRLPVVDTSKN 165
The following BLAST results are available for this feature:
BLAST of NO04G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28510.11.200e-8186.67hypothetical protein Naga_100131g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00430NO04G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00430.1NO04G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00430.1.cds1NO04G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00430.1.cds2NO04G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00430.1.cds3NO04G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00430.1.cds4NO04G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00430.1 ID=NO04G00430.1|Name=NO04G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=540bp
ATGACAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTA
TTTACTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGA
CCTACGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCC
ATAGGAGTCGCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGG
CCGCTCATTGGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTA
TGCGCGATACGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAA
TGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACTCTCAATTTTCG
GACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATA
CCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAA
TACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGACGC
GCTTGCTGTTACCGCCGTTCGCCACCTGCTTGTTTGCTGA
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protein sequence of NO04G00430.1

>NO04G00430.1-protein ID=NO04G00430.1-protein|Name=NO04G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MTATLVYQVPAGDFGAYLLGPWKRTLECREFGKTYEHQRTSSSVVVIEHA
IGVAAEPPTYFLNWKFGRSLEKEDLKLGYCMHFMRDTDITNLEWRYEENK
CHGWFLPHIAVATLNFRTPERSTTVTYRVVDEDTMAVSIVEVESHRSVLQ
YGHMLRLPVMDSNMNDALAVTAVRHLLVC*
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mRNA from alignment at chr4:170613..172131+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00430.1 ID=NO04G00430.1|Name=NO04G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at chr4:170613..172131+ (Nannochloropsis oceanica)
ATGACAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTA
TTTACTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGA
CCTACGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCC
ATAGGAGTCGCAGCCGAGCCGCCGACTTATGTAAGTTATGCATGCATATG
TGTAGGCAATCATCGAGTGTGAATTTGCGGGAAGACAGGTGCGCGCTTCG
CTTCCCGCGGTAAGTGTGGATGGAGAAATGGGAAAGGGCATGCGACGGAA
AGAGAGGTGATGGCAGCAATGCGATTTGCCTGTACCCACCAAGCTGTATA
CGTATGAGGTTTCTGGATAGATATGCCGCTACGCACCAGGGGAGAATAAA
ATAATAAGGTTGAAAAGTAAGACGATAGGGCATAATCAAATTAGTCTCAT
GGCGGCCACTGTGAGTGCTTGGCGCATGGTCTTTTGAAGCACTCTCTCGG
CCTGCTTTCCTTCACATACTCATGTGCCTGTATTTTATGATTTCGGATGT
TGGCAATTTTGACATGTAGCCAAATATCTGATAACGACGACATTGATACC
AAAGCTTGCAGCAATTGCCACCCAGCCAATTTACCGCGCTTTACCCCATC
CATTCACTCTCACTCCTTCTTGGCACCCCTACACCCAACAACAGTTTCTC
AATTGGAAGTTTGGCCGCTCATTGGAGAAGGAGGATCTGAAACTTGGCTA
CTGCATGCACTTTATGCGCGATACGGATATAACGAATCTGGAATGGCGGT
ATGAAGGTATGTGCACCATGCTGGATAGGCGTATAGGGTCACGCTGATTG
AGAGCAGGAAAGAAAATAGTACAGTGTGGATCAAATCATTTTTCACACGA
TGTACTCATAAAATTTACTCTTTCCTTTTTTTGACCCAATCCTCTTGCCC
AGAAAACAAATGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACTC
TCAATTTTCGGACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTG
GACGAGGATACCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATC
CGTTTTACAATACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATA
TGAATGTAAGCGGCGTTGGGAGACGGAGTAGGGGTGGCATGGGGGGAGAG
AGATGATGATGATGCTGTGAGGCGAAAGCAAAGGTATAACGCGACGCTTG
ACAAAAAGAAATATAGATATTAACATGCCGCCATGTTACATCGTTTTCAG
ATGCGTTTGCTTTCTTTATTGGTGGGGGGATGGGGGAAGAGGGTTGGGCA
GCTCGAGTTGATTTCTGCACTTTTCGTCTTGGGGATTTCGTGAGTGCATT
ACAACCAACAGAGCCCATTTGGTCCACACACCCACACCCAACACCCTCTC
CTCTCTCTCATACCTCATACACAGGACGCGCTTGCTGTTACCGCCGTTCG
CCACCTGCTTGTTTGCTGA
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Coding sequence (CDS) from alignment at chr4:170613..172131+

>NO04G00430.1 ID=NO04G00430.1|Name=NO04G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr4:170613..172131+ (Nannochloropsis oceanica)
ATGACAGCGACACTTGTCTATCAAGTCCCGGCAGGCGATTTTGGGGCTTA
TTTACTCGGGCCCTGGAAGCGCACTCTCGAGTGCCGGGAGTTTGGCAAGA
CCTACGAGCATCAACGGACGTCCAGTTCAGTTGTGGTAATTGAACATGCC
ATAGGAGTCGCAGCCGAGCCGCCGACTTATTTTCTCAATTGGAAGTTTGG
CCGCTCATTGGAGAAGGAGGATCTGAAACTTGGCTACTGCATGCACTTTA
TGCGCGATACGGATATAACGAATCTGGAATGGCGGTATGAAGAAAACAAA
TGCCATGGTTGGTTCCTGCCGCATATTGCCGTCGCCACTCTCAATTTTCG
GACGCCCGAGCGCTCCACGACGGTGACATACAGGGTAGTGGACGAGGATA
CCATGGCGGTCTCCATTGTGGAGGTGGAAAGTCATCGATCCGTTTTACAA
TACGGACACATGCTGCGCTTGCCAGTGATGGACAGCAATATGAATGACGC
GCTTGCTGTTACCGCCGTTCGCCACCTGCTTGTTTGCTGA
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Synonyms
Publications