NO03G05700, NO03G05700 (gene) Nannochloropsis oceanica

Overview
NameNO03G05700
Unique NameNO03G05700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr3:1640201..1640980 +

Link to JBrowse

Properties
Property NameValue
DescriptionCholine dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1640201..1640980 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf
IPR000172GMC_OxRdtase_N
Homology
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: EWM30046.1 (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 327.0 bits (837), Expect = 5.200e-86
Identity = 162/240 (67.50%), Postives = 194/240 (80.83%), Query Frame = 0 
Query:    5 SLLLYLSLLLPAASTSCTSGP-PFRGKGLQLDKTSLSFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRWGIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGDAQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            SL L LSL LP  S +CT      R    +L +     D++VVGAGNAGAVVAARLSEDP VRVLLLEEG+YSQDSG+  TS  + WI++QI TPR DYRTWA+PALT  L+TEANPA+NNRSG+L+GPV+TGKALGGST +NIGAYTRP PAYF+RWG+++W G+ET AYF K EDHED +PEYGK GPVHVE GDAQT+Y YL++AS++MDPPL S+SAGRLSYG+PQVYR ++ G R
Sbjct:    4 SLSLCLSLALP--SIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTR 241
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_020486489.1 (choline dehydrogenase [Sphingomonas melonis])

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-16
Identity = 71/208 (34.13%), Postives = 99/208 (47.60%), Query Frame = 0 
Query:   41 FDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIIT-PRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGDAQTVY-PYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            FD+IV+G G+AG V+AARLSEDP VRVLL+E G ++    RD        + E I T  + ++  W  P           P ++NR   L  P   GK LGGS+ +N   Y+R  P  ++RW   G+  W  D+   YF K E H    P +G  GP+ V  G++ + +      A      P+  +  G    G       I NGRR
Sbjct:    6 FDYIVIGGGSAGCVMAARLSEDPAVRVLLIEAGGHN----RDLLVRMPAGVGELIKTKSKHNWGFWTAP----------EPHLDNRR--LWWP--RGKGLGGSSAINGMIYSRGHPRDYDRWAQSGLAGWGWDDVLPYFRKLEGHHRSGPLHGTDGPLRVSPGESDSPFNAAFIAAGRQAGYPITDDFNGAHPEGFGPYDLTIANGRR 195
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_026189081.1 (choline dehydrogenase [Sphingomonas melonis] >KZB97111.1 choline dehydrogenase [Sphingomonas melonis TY] >AOW23516.1 choline dehydrogenase [Sphingomonas melonis TY] >ATI54460.1 choline dehydrogenase [Sphingomonas melonis])

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-16
Identity = 71/208 (34.13%), Postives = 99/208 (47.60%), Query Frame = 0 
Query:   41 FDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIIT-PRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGDAQTVY-PYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            FD+IV+G G+AG V+AARLSEDP VRVLL+E G ++    RD        + E I T  + ++  W  P           P ++NR   L  P   GK LGGS+ +N   Y+R  P  ++RW   G+  W  D+   YF K E H    P +G  GP+ V  G++ + +      A      P+  +  G    G       I NGRR
Sbjct:    6 FDYIVIGGGSAGCVMAARLSEDPAVRVLLIEAGGHN----RDLLVRMPAGVGELIKTKSKHNWGFWTAP----------EPHLDNRR--LWWP--RGKGLGGSSAINGMIYSRGHPRDYDRWAQSGLAGWGWDDVLPYFRKLEGHHRSGPLHGTDGPLRVSPGESDSPFNAAFIAAGRQAGYPITDDFNGAHPEGFGPYDLTIANGRR 195
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_063689074.1 (choline dehydrogenase [Sphingomonas sp. NIC1] >ANC88010.1 choline dehydrogenase [Sphingomonas sp. NIC1])

HSP 1 Score: 94.4 bits (233), Expect = 5.700e-16
Identity = 71/208 (34.13%), Postives = 97/208 (46.63%), Query Frame = 0 
Query:   41 FDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIIT-PRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGDAQTVY-PYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            FD+IV+G G+AG V+AARLSEDP VRVLL+E G       RD        + E I T  + ++  W  P           P ++NR   L  P   GK LGGS+ +N   Y+R  P  ++RW   G+  W  D+   YF K E H    P +G  GP+ V  G++ + +      A      P+  +  G    G       I NGRR
Sbjct:    6 FDYIVIGGGSAGCVMAARLSEDPAVRVLLIEAGG----PNRDLLVRMPAGVGELIKTKSKHNWGFWTAP----------EPHLDNRR--LWWP--RGKGLGGSSAINGMIYSRGHPRDYDRWAQSGLAGWGWDDVLPYFRKLEGHHRNGPLHGTDGPLRVSAGESDSPFNAAFIAAGRQAGYPITDDFNGAHPEGFGPYDLTIANGRR 195
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: SEN87031.1 (choline dehydrogenase [Rhodospirillales bacterium URHD0017])

HSP 1 Score: 94.4 bits (233), Expect = 5.700e-16
Identity = 74/209 (35.41%), Postives = 100/209 (47.85%), Query Frame = 0 
Query:   40 SFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHE-DPHPEYGKGGPVHV-EHGDAQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            ++DFIV GAG+AG  VA RLSED   RVLLLE G       +DS      WI      P   ++T+  P +     +E  P +NNR  I+  P   GK LGG++ +N   Y R   A ++ W   G + W  D    YF + ED E  P   +G GGP+ V +H    T+   +H+A+L    P   +  GR   GV      I   RR
Sbjct:    5 AYDFIVTGAGSAGCAVAGRLSEDGRFRVLLLEAG------PKDS----YPWIH----IPLGYHKTFNNPRVNWMFDSEPEPELNNR--IMYQP--RGKVLGGTSSINGMVYMRGNAADYDEWRQRGCEGWDYDSVLPYFKRAEDQERGPDEFHGVGGPLKVSDHRWQPTLAKAMHEAALQAGIPDNPDFNGRTQEGVGYYQTTINRARR 195
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_092821119.1 (choline dehydrogenase [Rhodospirillales bacterium URHD0017])

HSP 1 Score: 94.4 bits (233), Expect = 5.700e-16
Identity = 74/209 (35.41%), Postives = 100/209 (47.85%), Query Frame = 0 
Query:   40 SFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHE-DPHPEYGKGGPVHV-EHGDAQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            ++DFIV GAG+AG  VA RLSED   RVLLLE G       +DS      WI      P   ++T+  P +     +E  P +NNR  I+  P   GK LGG++ +N   Y R   A ++ W   G + W  D    YF + ED E  P   +G GGP+ V +H    T+   +H+A+L    P   +  GR   GV      I   RR
Sbjct:    6 AYDFIVTGAGSAGCAVAGRLSEDGRFRVLLLEAG------PKDS----YPWIH----IPLGYHKTFNNPRVNWMFDSEPEPELNNR--IMYQP--RGKVLGGTSSINGMVYMRGNAADYDEWRQRGCEGWDYDSVLPYFKRAEDQERGPDEFHGVGGPLKVSDHRWQPTLAKAMHEAALQAGIPDNPDFNGRTQEGVGYYQTTINRARR 196
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_038228052.1 (glucose-methanol-choline oxidoreductase [Vibrio sp. ER1A] >KFA96846.1 glucose-methanol-choline oxidoreductase [Vibrio sp. ER1A])

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-15
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 0 
Query:   40 SFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPEY-GKGGPVHVEHGDAQTVYPYLHQ---ASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            S+DFI+VG G+AG V+A+RLSEDP V V LLE G      G+D++      +   ++ P +    W          T   P +N R G        GK LGGS+ +N   Y R     ++RW   G + WS DE   YF K E++E  H ++ G+GGP++V   D ++  P + +   A  S+  P   +  G   +G  Q      NG R
Sbjct:    3 SYDFIIVGGGSAGCVLASRLSEDPTVNVCLLEAG------GKDTSPFIHTPVGCVVMMPTK-INNWG-------FETVPQPGLNGRKGY----QPRGKTLGGSSSINAMMYARGHRYDYDRWASLGNEGWSYDECLPYFKKAENNEVHHDDFHGQGGPLNV--ADLRSPSPMVERYLSACESIGVPTNHDVNGAEQFGAMQTQVTQLNGER 193
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: KII84131.1 (hypothetical protein PLICRDRAFT_118582 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-15
Identity = 70/183 (38.25%), Postives = 95/183 (51.91%), Query Frame = 0 
Query:   16 AASTSCTSGPPFRGKGLQLDKTSLSFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHED-PHPE-YGKGGP 194
            A S +  S    +G+G+        +D+IVVG G AG V+A+RLSED  V VLL+E G  S           Q+W   ++     DYR    PA+    +  +N  +NNR    +  +++GKALGG++ +N   YTR   + FNRW   G K WS DE E YF K ED    P PE +  GGP
Sbjct:   16 AGSETKLSDKESKGRGV--------YDYIVVGGGTAGCVLASRLSEDSNVSVLLVERGGAS-----------QSW-ESRVPLLSSDYRRKKAPAMLWDAAPLSN--INNR----VVDMLSGKALGGTSRINSMVYTRGSASEFNRWSRSGRKGWSYDEIEKYFKKSEDFTGRPVPEHHATGGP 172
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_046904175.1 (hypothetical protein [Altererythrobacter atlanticus] >AKH43681.1 Oxygen-dependent choline dehydrogenase [Altererythrobacter atlanticus])

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-15
Identity = 74/212 (34.91%), Postives = 108/212 (50.94%), Query Frame = 0 
Query:   40 SFDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPEY-GKGGPVHV-EHGDAQTVYPYLHQASLSMDPPLRSNSAG--RLSYGVPQVYRVIENGRRG 245
            S DFIVVGAG+AGAVVAARLSE+P +RV L+E GN      R+        IA  ++   + +  W           E  P  +NR   L  P   GK LGGS+++N   Y R  P  ++ W   G++ WS ++   +F K E+H  P  +Y GKGGP+ + +H     +YP   +A   +    +++  G  +  +G P +   I  GRRG
Sbjct:    4 STDFIVVGAGSAGAVVAARLSENPDIRVTLIEAGN------RELHPLLTMPIAFPMVMADKRF-NWGYEG-------EPEPHADNRR--LRQP--RGKGLGGSSLINGMLYARGHPRDYDEWRQLGLEGWSYEDVLPFFKKSEEHWGPADQYHGKGGPLTITKHIPDDKLYPRFIEAVTKLGYKTQADHHGPDQEGWGSPDI--SIHKGRRG 195
[Close]
BLAST of NO03G05700 vs. NCBI_GenBank
Match: WP_096355855.1 (choline dehydrogenase [Variibacter gotjawalensis] >BAT60004.1 oxygen-dependent choline dehydrogenase [Variibacter gotjawalensis])

HSP 1 Score: 92.0 bits (227), Expect = 2.800e-15
Identity = 75/210 (35.71%), Postives = 98/210 (46.67%), Query Frame = 0 
Query:   41 FDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRW---GIKNWSGDETEAYFHKQEDHEDPHPE-YGKGGPVHVEHGDAQTVYPYLH---QASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            +D+IVVGAG+AG V+AARLSEDP  +VLLLE G      G+D       WI      P    + +  P +    +TE  P +NNR   ++ P   GK LGGS+ +N   Y R +P  +N W   G   WS D+   YF K ED +      +GKGGP+ V   D    +P       AS     P   +  G    G         NGRR
Sbjct:    4 YDYIVVGAGSAGCVLAARLSEDPRNKVLLLEAG------GKD----RNLWIH----VPLGYGKLFNNPNVNWLYNTEPEPELNNRQ--IIQP--RGKVLGGSSSINGLLYLRGQPEDYNHWRQLGNAGWSFDDVLPYFRKAEDQQRGADRLHGKGGPLAV--SDVSEPHPLCEAFIDASQQAGHPRNDDFNGETQEGAGYFQLTARNGRR 193
The following BLAST results are available for this feature:
BLAST of NO03G05700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30046.15.200e-8667.50choline dehydrogenase [Nannochloropsis gaditana][more]
WP_020486489.11.500e-1634.13choline dehydrogenase [Sphingomonas melonis][more]
WP_026189081.11.500e-1634.13choline dehydrogenase [Sphingomonas melonis] >KZB9... [more]
WP_063689074.15.700e-1634.13choline dehydrogenase [Sphingomonas sp. NIC1] >ANC... [more]
SEN87031.15.700e-1635.41choline dehydrogenase [Rhodospirillales bacterium ... [more]
WP_092821119.15.700e-1635.41choline dehydrogenase [Rhodospirillales bacterium ... [more]
WP_038228052.12.200e-1533.18glucose-methanol-choline oxidoreductase [Vibrio sp... [more]
KII84131.12.200e-1538.25hypothetical protein PLICRDRAFT_118582 [Plicaturop... [more]
WP_046904175.12.200e-1534.91hypothetical protein [Altererythrobacter atlanticu... [more]
WP_096355855.12.800e-1535.71choline dehydrogenase [Variibacter gotjawalensis] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005295NSK005295Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05700.1NO03G05700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562503gene_1783Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100225g10gene602Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05700.1NO03G05700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05700 ID=NO03G05700|Name=NO03G05700|organism=Nannochloropsis oceanica|type=gene|length=780bp
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTGCTCCCCGCAGC
CTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCCAGT
TGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGCAAT
GCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCGCGT
GCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACAGCA
CCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGTCGT
GACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCACTGA
AGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGGTGG
TGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCTTAC
ACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTGGAG
CGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGGATC
CTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGCGAC
GCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAGCATGGACCC
CCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGCAGG
TGTACCGTGTCATTGAGAACGGGAGGCGCGGGCGCCTACACCGCCTACCT
GCGGCCTGTAGTTGCAGAGCGCAACGATAA
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protein sequence of NO03G05700.1

>NO03G05700.1-protein ID=NO03G05700.1-protein|Name=NO03G05700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPFSSLLLYLSLLLPAASTSCTSGPPFRGKGLQLDKTSLSFDFIVVGAGN
AGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRR
DYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAY
TRPEPAYFNRWGIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGD
AQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRRGRLHRLP
AACSCRAQR*
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Synonyms
Publications