NO03G05700.1, NO03G05700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05700.1
Unique NameNO03G05700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr3:1640201..1640980 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1640201..1640980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05700.1 vs.
Match: EWM30046.1 (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 327.0 bits (837), Expect = 5.200e-86
Identity = 163/240 (67.92%), Postives = 195/240 (81.25%), Query Frame = 0 
Query:    5 SLLLYLSLLLPAASTSCTSGPPFRGKGLQLDKTSLS-FDFIVVGAGNAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRRDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAYTRPEPAYFNRWGIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGDAQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRR 244
            SL L LSL LP  S +CT       K  +  K +L   D++VVGAGNAGAVVAARLSEDP VRVLLLEEG+YSQDSG+  TS  + WI++QI TPR DYRTWA+PALT  L+TEANPA+NNRSG+L+GPV+TGKALGGST +NIGAYTRP PAYF+RWG+++W G+ET AYF K EDHED +PEYGK GPVHVE GDAQT+Y YL++AS++MDPPL S+SAGRLSYG+PQVYR ++ G R
Sbjct:    4 SLSLCLSLALP--SIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTR 241
The following BLAST results are available for this feature:
BLAST of NO03G05700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30046.15.200e-8667.92choline dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05700NO03G05700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05700.1NO03G05700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05700.1.cds1NO03G05700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05700.1 ID=NO03G05700.1|Name=NO03G05700.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTGCTCCCCGCAGC
CTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCCAGT
TGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGCAAT
GCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCGCGT
GCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACAGCA
CCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGTCGT
GACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCACTGA
AGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGGTGG
TGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCTTAC
ACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTGGAG
CGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGGATC
CTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGCGAC
GCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAGCATGGACCC
CCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGCAGG
TGTACCGTGTCATTGAGAACGGGAGGCGCGGGCGCCTACACCGCCTACCT
GCGGCCTGTAGTTGCAGAGCGCAACGATAA
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protein sequence of NO03G05700.1

>NO03G05700.1-protein ID=NO03G05700.1-protein|Name=NO03G05700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPFSSLLLYLSLLLPAASTSCTSGPPFRGKGLQLDKTSLSFDFIVVGAGN
AGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPRR
DYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGAY
TRPEPAYFNRWGIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHGD
AQTVYPYLHQASLSMDPPLRSNSAGRLSYGVPQVYRVIENGRRGRLHRLP
AACSCRAQR*
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mRNA from alignment at chr3:1640201..1640980+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05700.1 ID=NO03G05700.1|Name=NO03G05700.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp|location=Sequence derived from alignment at chr3:1640201..1640980+ (Nannochloropsis oceanica)
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTGCTCCCCGCAGC
CTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCCAGT
TGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGCAAT
GCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCGCGT
GCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACAGCA
CCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGTCGT
GACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCACTGA
AGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGGTGG
TGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCTTAC
ACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTGGAG
CGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGGATC
CTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGCGAC
GCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAGCATGGACCC
CCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGCAGG
TGTACCGTGTCATTGAGAACGGGAGGCGCGGGCGCCTACACCGCCTACCT
GCGGCCTGTAGTTGCAGAGCGCAACGATAA
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Coding sequence (CDS) from alignment at chr3:1640201..1640980+

>NO03G05700.1 ID=NO03G05700.1|Name=NO03G05700.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr3:1640201..1640980+ (Nannochloropsis oceanica)
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTGCTCCCCGCAGC
CTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCCAGT
TGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGCAAT
GCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCGCGT
GCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACAGCA
CCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGTCGT
GACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCACTGA
AGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGGTGG
TGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCTTAC
ACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTGGAG
CGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGGATC
CTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGCGAC
GCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAGCATGGACCC
CCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGCAGG
TGTACCGTGTCATTGAGAACGGGAGGCGCGGGCGCCTACACCGCCTACCT
GCGGCCTGTAGTTGCAGAGCGCAACGATAA
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Synonyms
Publications