NO03G05200, NO03G05200 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05200
Unique Name	NO03G05200
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1029
Alignment location	chr3:1485775..1486803 +

Link to JBrowse

Properties


Property Name	Value
Description	Ubiquitin domain-containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1485775..1486803 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination

Vocabulary: **INTERPRO**
Term	Definition
IPR038765	Papain_like_cys_pep_sf
IPR028889	USP_dom
IPR001394	Peptidase_C19_UCH

Homology

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: XP_005854402.1 (ubiquitin carboxyl-terminal hydrolase 7, partial [Nannochloropsis gaditana CCMP526] >EKU21958.1 ubiquitin carboxyl-terminal hydrolase 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-13
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPLHKLQ 202
            YLY L GVV H+GT++SGHYYS+I+E        GGE   WFE+ND VV+ F+P+ +  ECFGG E           TGG GG   GR   R R  NA+LL Y     D+  +   ++   H+ Q
Sbjct:  610 YLYRLAGVVIHMGTANSGHYYSYIRER-------GGERSGWFEFNDTVVTDFNPADLEVECFGGQE-------TRGGTGG-GGYHGGRNWARERIRNAFLLVYDR--CDIRPEDDARNTVAHRPQ 717

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: EWM22435.1 (ubiquitin domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-13
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPLHKLQ 202
            YLY L GVV H+GT++SGHYYS+I+E        GGE   WFE+ND VV+ F+P+ +  ECFGG E           TGG GG   GR   R R  NA+LL Y     D+  +   ++   H+ Q
Sbjct: 2508 YLYRLAGVVIHMGTANSGHYYSYIRER-------GGERSGWFEFNDTVVTDFNPADLEVECFGGQE-------TRGGTGG-GGYHGGRNWARERIRNAFLLVYDR--CDIRPEDDARNTVAHRPQ 2615

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: OMJ91622.1 (hypothetical protein SteCoe_5768 [Stentor coeruleus])

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-13
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPL 198
            Y Y L+G++ HVGT+DSGHYYSFI+E+++           WFE+ND +V PFDPS IP E FGG E      S    +G    A       + ++ NAY+L Y+     V  ++ E   PL
Sbjct: 1593 YQYRLRGIIIHVGTADSGHYYSFIREQNQ-----------WFEFNDTLVRPFDPSDIPNEAFGGEEK----FSYQAQSGVTAAAF------KSKHRNAYILLYERSKFYVYRKEEESLKPL 1692

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: XP_004335984.1 (ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] >ELR13971.1 ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 85.1 bits (209), Expect = 4.600e-13
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQ 181
            Y YEL G++ H GT+D GHYYSFI+E      +  GE  +W+++ND +V PFDP  IPK CFGG +      +V       G  +P     R +  NAY+LFYQ
Sbjct: 1647 YKYELAGILVHTGTADYGHYYSFIRER---LPKVAGEACKWYQFNDTLVEPFDPEEIPKTCFGGAD------TVTEWDEVAGKHVP---KWRAKTYNAYMLFYQ 1738

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: EJY74810.1 (Ubiquitin carboxyl-terminal hydrolase family protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 84.3 bits (207), Expect = 7.800e-13
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQHKL 184
            Y Y+L G+V H GT+DSGHYYSFIK+ +        E G+W+E NDQ+V  FDP+ IP+EC+GG +       V              +   ++  NAYLLFY+ K+
Sbjct: 1879 YDYQLSGIVVHSGTADSGHYYSFIKDREHP------ESGKWYELNDQIVRDFDPNDIPQECYGGEDTFQGYNMV--------------QMKSMKWRNAYLLFYERKI 1965

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: ETI44198.1 (hypothetical protein F443_11094 [Phytophthora parasitica P1569])

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-12
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   79 YELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREG----GRVRNNNAYLLFY 180
            YEL G V H+GT+ SGHYYSF+K++   + ++     +W+E+ND VV+PFDPS IP ECFGG +      SV        G+    EG     +++N ++++LFY
Sbjct: 2260 YELVGTVVHLGTAHSGHYYSFLKDQQVPSHKN-----QWYEFNDTVVTPFDPSQIPDECFGGED------SVRTRHDSASGSSSLEEGSPLPAKMKNRSSFMLFY 2353

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: ETM44084.1 (hypothetical protein L914_10655 [Phytophthora parasitica])

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-12
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   79 YELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREG----GRVRNNNAYLLFY 180
            YEL G V H+GT+ SGHYYSF+K++   + ++     +W+E+ND VV+PFDPS IP ECFGG +      SV        G+    EG     +++N ++++LFY
Sbjct: 2260 YELVGTVVHLGTAHSGHYYSFLKDQQVPSHKN-----QWYEFNDTVVTPFDPSQIPDECFGGED------SVRTRHDSASGSSSLEEGSPLPAKMKNRSSFMLFY 2353

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: XP_008907070.1 (hypothetical protein PPTG_13095 [Phytophthora parasitica INRA-310] >ETN07785.1 hypothetical protein PPTG_13095 [Phytophthora parasitica INRA-310])

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-12
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   79 YELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREG----GRVRNNNAYLLFY 180
            YEL G V H+GT+ SGHYYSF+K++   + ++     +W+E+ND VV+PFDPS IP ECFGG +      SV        G+    EG     +++N ++++LFY
Sbjct: 2260 YELVGTVVHLGTAHSGHYYSFLKDQQVPSHKN-----QWYEFNDTVVTPFDPSQIPDECFGGED------SVRTRHDSASGSSSLEEGSPLPAKMKNRSSFMLFY 2353

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: ETP42074.1 (hypothetical protein F442_10997 [Phytophthora parasitica P10297])

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-12
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   79 YELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREG----GRVRNNNAYLLFY 180
            YEL G V H+GT+ SGHYYSF+K++   + ++     +W+E+ND VV+PFDPS IP ECFGG +      SV        G+    EG     +++N ++++LFY
Sbjct: 2260 YELVGTVVHLGTAHSGHYYSFLKDQQVPSHKN-----QWYEFNDTVVTPFDPSQIPDECFGGED------SVRTRHDSASGSSSLEEGSPLPAKMKNRSSFMLFY 2353

[Close]

BLAST of NO03G05200 vs. NCBI_GenBank
Match: CDW78729.1 (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-12
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0

Query:   77 YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRN---NNAYLLFYQHKL 184
            Y Y+L G+V H GT+DSGHYYSFIK+ D        E G+W+E ND +V  FDP  IP+EC+GG +                    G    ++++    NAYLLFY+ K+
Sbjct: 1879 YDYQLSGIVVHSGTADSGHYYSFIKDRDHP------ESGKWYELNDHIVRDFDPVDIPQECYGGED-----------------TFQGYNMVQIKSMKWRNAYLLFYEKKV 1965

The following BLAST results are available for this feature:

BLAST of NO03G05200 vs. NCBI_GenBank

BLAST of NO03G05200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005854402.1	1.200e-13	42.40	ubiquitin carboxyl-terminal hydrolase 7, partial [...	[more]
EWM22435.1	1.200e-13	42.40	ubiquitin domain-containing protein [Nannochlorops...	[more]
OMJ91622.1	2.100e-13	39.67	hypothetical protein SteCoe_5768 [Stentor coeruleu...	[more]
XP_004335984.1	4.600e-13	43.27	ubiquitin domain containing protein [Acanthamoeba ...	[more]
EJY74810.1	7.800e-13	41.12	Ubiquitin carboxyl-terminal hydrolase family prote...	[more]
ETI44198.1	2.300e-12	40.95	hypothetical protein F443_11094 [Phytophthora para...	[more]
ETM44084.1	2.300e-12	40.95	hypothetical protein L914_10655 [Phytophthora para...	[more]
XP_008907070.1	2.300e-12	40.95	hypothetical protein PPTG_13095 [Phytophthora para...	[more]
ETP42074.1	2.300e-12	40.95	hypothetical protein F442_10997 [Phytophthora para...	[more]
CDW78729.1	2.300e-12	40.00	UNKNOWN [Stylonychia lemnae]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL069	nonsL069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR054	ngnoR054	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G05200.1	NO03G05200.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|15946	gene_1732	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G05200.1	NO03G05200.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G05200 ID=NO03G05200|Name=NO03G05200|organism=Nannochloropsis oceanica|type=gene|length=1029bp
ATGAGGGTAGGGGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAA
GGCACCGATGCTGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGG
GCCTGCTGCTGGCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCG
ATGGGAGGGGAAGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCA
TCCATCGTCCTCGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGG
TGGTGGCCCATGTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATC
AAGGAGGAGGATGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTG
GTTTGAGTATAATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTC
CAAAAGAGTGTTTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTA
GTGCACGCAACGGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGG
GAGGGTGAGGAATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGG
TGGATGTGCCGCATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTC
CAGCACCAGCACCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAA
GAGAGAGATGACGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGG
GGGAGGGAGAGGGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGC
AAACAAGAGCAGCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAG
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGG
AGAAGGAAGGGGTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAG
AGACTGGCGTCTGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATA
TGACAGTAGCAGCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAG
GGGGGGGAGGGGAGGAGGACGAGGAATAG

protein sequence of NO03G05200.1

>NO03G05200.1-protein ID=NO03G05200.1-protein|Name=NO03G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MRVGGEEGGEGGEEGRKAPMLGALGSSFFSSSRGLLLASSLSSSSGLFSS
MGGEGGEGGTGSSLPLHPSSSASTRRYLYELKGVVAHVGTSDSGHYYSFI
KEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSV
VHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPLHKL
QHQHQNQHRQQKQSSRKREMTEMGMEGEEEEEGGEGEGEQTPLPSPVTAS
KQEQRERGVLWGMRKESEEEEEEEEEEEEEDEGEKEGVLSALVLARRRRE
RLASERANSFGTYLEAYDSSSKVKGHSAGREGRGGGGEEDEE*

Synonyms

Publications